Wall clock time and date at job start Mon Mar 30 2020 17:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46793 * 2 1 4 4 H 1.08997 * 109.47408 * 305.00352 * 3 2 1 5 5 C 1.50700 * 109.46933 * 184.99642 * 3 2 1 6 6 H 1.07996 * 120.00131 * 239.99836 * 5 3 2 7 7 C 1.37880 * 119.99583 * 60.00625 * 5 3 2 8 8 N 1.31518 * 120.00017 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99922 * 179.97438 * 7 5 3 10 10 H 1.48508 * 109.46752 * 60.00234 * 9 7 5 11 11 H 1.48502 * 109.47298 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47415 * 300.00544 * 9 7 5 13 13 N 1.46907 * 109.46859 * 65.00332 * 3 2 1 14 14 C 1.46900 * 110.99599 * 274.99812 * 13 3 2 15 15 H 1.09000 * 115.55829 * 350.70497 * 14 13 3 16 16 C 1.53056 * 117.50430 * 136.46733 * 14 13 3 17 17 C 1.52726 * 59.94498 * 107.46199 * 16 14 13 18 18 C 1.53269 * 117.81823 * 252.29069 * 17 16 14 19 19 C 1.53405 * 108.35690 * 163.56774 * 18 17 16 20 20 C 1.53054 * 109.08444 * 53.63439 * 19 18 17 21 21 O 1.42839 * 109.78250 * 299.28960 * 20 19 18 22 22 C 1.42998 * 114.17149 * 64.26727 * 21 20 19 23 23 H 1.09003 * 109.47347 * 299.99451 * 1 2 3 24 24 H 1.08995 * 109.47318 * 59.99794 * 1 2 3 25 25 H 1.09004 * 109.46630 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47243 * 240.00473 * 2 1 3 27 27 H 1.08995 * 109.47318 * 120.00206 * 2 1 3 28 28 H 0.97000 * 119.99649 * 179.97438 * 8 7 5 29 29 H 1.00896 * 110.99739 * 151.04602 * 13 3 2 30 30 H 1.08999 * 117.50006 * 359.97438 * 16 14 13 31 31 H 1.09003 * 117.50123 * 214.94043 * 16 14 13 32 32 H 1.08990 * 109.68889 * 43.84956 * 18 17 16 33 33 H 1.09000 * 109.71410 * 283.29660 * 18 17 16 34 34 H 1.09001 * 109.53324 * 293.75714 * 19 18 17 35 35 H 1.09002 * 109.53777 * 173.51734 * 19 18 17 36 36 H 1.09002 * 109.40915 * 59.36636 * 20 19 18 37 37 H 1.09001 * 109.41005 * 179.21554 * 20 19 18 38 38 H 1.08996 * 109.61625 * 182.75519 * 22 21 20 39 39 H 1.09005 * 109.74091 * 62.35055 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1237 6 1 4.1471 1.8890 0.6524 7 6 4.1432 0.8786 -1.2280 8 7 3.4061 0.3368 -2.1729 9 14 6.0049 0.8814 -1.3818 10 1 6.5974 0.1473 -0.2349 11 1 6.3978 0.2170 -2.6504 12 1 6.4995 2.2816 -1.3819 13 7 1.6513 2.0993 1.2553 14 6 0.2912 2.6466 1.1639 15 1 -0.1552 2.6334 0.1695 16 6 -0.6392 2.4316 2.3600 17 6 -0.0612 3.8173 2.0799 18 6 1.0296 4.3408 3.0208 19 6 1.7351 5.5177 2.3350 20 6 0.6877 6.5483 1.9066 21 8 -0.2259 5.9539 0.9833 22 6 -1.0077 4.8913 1.5350 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.8292 -0.0609 -2.9499 29 1 2.3138 2.8171 1.5080 30 1 -0.2420 1.8836 3.2144 31 1 -1.6980 2.2765 2.1526 32 1 1.7501 3.5488 3.2243 33 1 0.5793 4.6765 3.9550 34 1 2.2734 5.1589 1.4577 35 1 2.4361 5.9783 3.0311 36 1 0.1416 6.8958 2.7836 37 1 1.1847 7.3937 1.4309 38 1 -1.6404 4.4613 0.7587 39 1 -1.6305 5.2740 2.3437 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165046.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:46:51 Heat of formation + Delta-G solvation = -51.039891 kcal Electronic energy + Delta-G solvation = -18122.268160 eV Core-core repulsion = 15450.259557 eV Total energy + Delta-G solvation = -2672.008603 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.87568 -38.39796 -36.47366 -33.93335 -33.48358 -31.78055 -29.15299 -27.86179 -26.10585 -24.68831 -23.08660 -22.31386 -21.28563 -19.94395 -18.47024 -17.17310 -17.11047 -16.71940 -16.15455 -15.87779 -15.68184 -15.09213 -14.59186 -14.31035 -13.91883 -13.75728 -13.59927 -13.42248 -13.08328 -13.05470 -12.74088 -12.57465 -12.26927 -12.10334 -11.99793 -11.66718 -11.63186 -11.46011 -11.16735 -10.79829 -10.55335 -10.43876 -10.35793 -8.86166 -8.13120 -6.27902 1.40122 1.42013 1.49598 2.39881 2.72399 3.13881 3.18514 3.44038 3.82410 3.84805 3.98910 4.11637 4.22499 4.40680 4.51088 4.59676 4.61520 4.65783 4.72635 4.74065 4.80844 4.89518 4.92728 5.01447 5.10044 5.16269 5.20192 5.34983 5.37266 5.42148 5.49719 5.64444 5.71865 5.88798 6.29048 6.30046 6.49217 6.79801 6.99187 7.42100 8.91421 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.024678 B = 0.007412 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.344896 B = 3776.791504 C = 4448.100563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 C 0.229 3.771 4 H -0.037 1.037 5 C -0.542 4.542 6 H 0.056 0.944 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.961 3.039 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.271 1.271 13 N -0.650 5.650 14 C 0.026 3.974 15 H 0.070 0.930 16 C -0.143 4.143 17 C -0.173 4.173 18 C -0.082 4.082 19 C -0.153 4.153 20 C 0.060 3.940 21 O -0.407 6.407 22 C 0.100 3.900 23 H 0.070 0.930 24 H 0.027 0.973 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.330 0.670 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.487 9.032 10.112 15.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.139 4.139 3 C 0.121 3.879 4 H -0.020 1.020 5 C -0.580 4.580 6 H 0.074 0.926 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.786 3.214 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.280 5.280 14 C -0.086 4.086 15 H 0.088 0.912 16 C -0.182 4.182 17 C -0.175 4.175 18 C -0.119 4.119 19 C -0.191 4.191 20 C -0.016 4.016 21 O -0.327 6.327 22 C 0.024 3.976 23 H 0.089 0.911 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.150 0.850 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.112 0.888 36 H 0.089 0.911 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.664 8.409 10.033 15.170 hybrid contribution 1.275 0.260 -0.947 1.609 sum -6.390 8.668 9.087 14.090 Atomic orbital electron populations 1.21849 0.96708 1.00261 1.00805 1.21345 0.94211 0.98485 0.99861 1.18896 0.93256 0.91388 0.84403 1.01981 1.21590 0.92679 1.38310 1.05417 0.92576 1.25722 1.02815 0.94724 0.95280 1.70026 1.36699 1.38857 1.09823 0.85579 0.80027 0.78409 0.77412 1.19577 1.20837 1.19668 1.60499 1.01271 1.31897 1.34345 1.22489 0.92312 0.99936 0.93825 0.91190 1.23204 0.98787 0.96383 0.99799 1.22616 1.01519 0.90750 1.02574 1.21115 0.96067 0.97578 0.97169 1.22183 0.98983 0.97171 1.00735 1.22663 0.90348 0.94954 0.93639 1.87903 1.54523 1.50482 1.39758 1.22222 0.91200 0.85605 0.98575 0.91096 0.95341 0.93549 0.92303 0.95265 0.92870 0.84971 0.88498 0.87284 0.91759 0.89480 0.93985 0.88801 0.91129 0.88305 0.89240 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.77 8.85 71.98 0.64 -5.13 16 2 C -0.10 -5.06 5.45 30.60 0.17 -4.89 16 3 C 0.23 11.97 2.21 44.17 0.10 12.07 16 4 H -0.04 -2.21 7.57 -2.39 -0.02 -2.23 16 5 C -0.54 -30.51 8.59 25.60 0.22 -30.29 16 6 H 0.06 3.09 7.62 -2.91 -0.02 3.07 16 7 C 0.01 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -53.84 11.29 21.45 0.24 -53.60 16 9 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 N -0.65 -28.05 6.08 -473.60 -2.88 -30.93 16 14 C 0.03 0.93 3.73 44.86 0.17 1.09 16 15 H 0.07 2.85 7.10 -2.39 -0.02 2.84 16 16 C -0.14 -4.00 8.83 30.52 0.27 -3.73 16 17 C -0.17 -4.87 2.14 -52.20 -0.11 -4.98 16 18 C -0.08 -2.09 5.16 30.82 0.16 -1.94 16 19 C -0.15 -3.82 6.15 30.75 0.19 -3.63 16 20 C 0.06 1.37 6.73 72.00 0.48 1.85 16 21 O -0.41 -11.91 10.76 -148.98 -1.60 -13.51 16 22 C 0.10 2.54 6.63 72.04 0.48 3.02 16 23 H 0.07 2.68 4.98 -2.39 -0.01 2.67 16 24 H 0.03 1.18 8.13 -2.39 -0.02 1.16 16 25 H 0.05 1.71 8.14 -2.38 -0.02 1.70 16 26 H 0.06 3.33 5.95 -2.39 -0.01 3.31 16 27 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 29 H 0.33 14.27 6.29 -89.70 -0.56 13.70 16 30 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 31 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.06 1.87 6.70 -2.39 -0.02 1.86 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.04 1.33 7.93 -2.39 -0.02 1.31 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.09 2.25 8.08 -2.39 -0.02 2.23 16 39 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -62.85 300.67 1.45 -61.40 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.45 Total: 25.66 kcal Atomic # 6 Polarization: -38.51 SS G_CDS: 3.20 Total: -35.31 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.64 Total: -84.52 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -1.60 Total: -13.51 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -62.85 1.45 -61.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165046.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.360 kcal (2) G-P(sol) polarization free energy of solvation -62.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds