Wall clock time and date at job start Mon Mar 30 2020 17:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 H 1.08995 * 109.47524 * 304.99884 * 3 2 1 5 5 C 1.50706 * 109.47011 * 184.99952 * 3 2 1 6 6 H 1.08004 * 119.99710 * 239.99761 * 5 3 2 7 7 C 1.37875 * 119.99843 * 60.00115 * 5 3 2 8 8 N 1.31509 * 120.00465 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99940 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46938 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.46969 * 120.00068 * 9 7 5 12 12 H 1.48500 * 109.47218 * 240.00334 * 9 7 5 13 13 N 1.46902 * 109.47083 * 65.00396 * 3 2 1 14 14 C 1.46906 * 110.99573 * 274.99770 * 13 3 2 15 15 H 1.08998 * 115.55615 * 9.41568 * 14 13 3 16 16 C 1.53053 * 117.50510 * 223.71188 * 14 13 3 17 17 C 1.52754 * 117.50527 * 155.12199 * 14 13 3 18 18 C 1.53267 * 117.76469 * 359.66271 * 17 14 13 19 19 C 1.53394 * 108.36010 * 265.39992 * 18 17 14 20 20 C 1.53058 * 109.08476 * 306.34893 * 19 18 17 21 21 O 1.42835 * 109.82322 * 60.76233 * 20 19 18 22 22 C 1.43139 * 114.08758 * 295.76560 * 21 20 19 23 23 H 1.09004 * 109.47336 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47379 * 299.99849 * 1 2 3 25 25 H 1.09003 * 109.47600 * 60.00114 * 1 2 3 26 26 H 1.08996 * 109.47379 * 240.00150 * 2 1 3 27 27 H 1.09003 * 109.47600 * 119.99886 * 2 1 3 28 28 H 0.96994 * 120.00796 * 179.97438 * 8 7 5 29 29 H 1.00896 * 111.00219 * 38.95409 * 13 3 2 30 30 H 1.09003 * 117.50465 * 0.02562 * 16 14 13 31 31 H 1.09001 * 117.50580 * 145.02734 * 16 14 13 32 32 H 1.08997 * 109.68990 * 25.11993 * 18 17 14 33 33 H 1.09001 * 109.69076 * 145.68379 * 18 17 14 34 34 H 1.09000 * 109.54062 * 186.46596 * 19 18 17 35 35 H 1.09005 * 109.53847 * 66.22970 * 19 18 17 36 36 H 1.09003 * 109.41021 * 300.65365 * 20 19 18 37 37 H 1.08995 * 109.35891 * 180.83603 * 20 19 18 38 38 H 1.08999 * 109.59287 * 297.66202 * 22 21 20 39 39 H 1.08998 * 109.59356 * 177.21445 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3375 -2.1733 9 14 6.0049 0.8812 -1.3818 10 1 6.5987 1.5462 -0.1942 11 1 6.4970 -0.5174 -1.4630 12 1 6.3990 1.6168 -2.6102 13 7 1.6513 2.0992 1.2553 14 6 0.2912 2.6467 1.1638 15 1 -0.2737 2.3570 0.2778 16 6 0.0554 4.0512 1.7245 17 6 -0.4849 2.8293 2.4668 18 6 0.2064 2.4219 3.7726 19 6 -0.2094 0.9848 4.1114 20 6 -1.7373 0.8952 4.1223 21 8 -2.2515 1.2331 2.8332 22 6 -1.9967 2.5852 2.4387 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8292 -0.0603 -2.9503 29 1 1.7343 1.4653 2.0358 30 1 0.9096 4.5690 2.1608 31 1 -0.6646 4.6854 1.2073 32 1 1.2879 2.4712 3.6466 33 1 -0.1011 3.0920 4.5755 34 1 0.1785 0.7150 5.0937 35 1 0.1903 0.3030 3.3606 36 1 -2.1355 1.5876 4.8641 37 1 -2.0379 -0.1210 4.3772 38 1 -2.4901 3.2672 3.1312 39 1 -2.3747 2.7489 1.4295 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165048.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:46:57 Heat of formation + Delta-G solvation = -31.204787 kcal Electronic energy + Delta-G solvation = -18295.337885 eV Core-core repulsion = 15624.189397 eV Total energy + Delta-G solvation = -2671.148488 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.72377 -36.99932 -34.90193 -32.52560 -31.88301 -29.82118 -27.68031 -26.26119 -25.00457 -22.90113 -22.01001 -20.68587 -19.77716 -18.61617 -16.46743 -16.03726 -15.70203 -15.22319 -14.64262 -14.55336 -14.20977 -13.48279 -13.15682 -12.85385 -12.63905 -12.51832 -12.33767 -11.66668 -11.28314 -11.20618 -11.10466 -10.99611 -10.76934 -10.63272 -10.55641 -10.14226 -10.03370 -9.93724 -9.64289 -9.34369 -9.16497 -8.86896 -8.31833 -7.10454 -5.96578 -4.00094 3.32415 3.40230 3.45285 3.84359 4.33680 4.44163 4.78956 4.95589 4.98846 5.14265 5.18867 5.33239 5.34366 5.48465 5.62718 5.64545 5.74829 5.94118 5.96840 6.10158 6.14007 6.22541 6.25318 6.31037 6.41562 6.48466 6.54674 6.59130 6.95432 7.02764 7.28004 7.29051 7.46298 7.80241 7.91176 8.32402 8.55070 8.64171 9.07452 9.64921 11.09817 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.035546 B = 0.006534 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.529478 B = 4284.571981 C = 4427.277846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.149 4.149 3 C 0.219 3.781 4 H 0.035 0.965 5 C -0.495 4.495 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.651 5.651 14 C 0.058 3.942 15 H 0.097 0.903 16 C -0.168 4.168 17 C -0.189 4.189 18 C -0.082 4.082 19 C -0.155 4.155 20 C 0.064 3.936 21 O -0.379 6.379 22 C 0.102 3.898 23 H 0.030 0.970 24 H 0.051 0.949 25 H 0.040 0.960 26 H 0.098 0.902 27 H 0.030 0.970 28 H 0.259 0.741 29 H 0.328 0.672 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.438 2.637 10.471 14.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.188 4.188 3 C 0.112 3.888 4 H 0.053 0.947 5 C -0.534 4.534 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.212 1.212 13 N -0.281 5.281 14 C -0.054 4.054 15 H 0.115 0.885 16 C -0.206 4.206 17 C -0.191 4.191 18 C -0.119 4.119 19 C -0.192 4.192 20 C -0.013 4.013 21 O -0.298 6.298 22 C 0.025 3.975 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.116 0.884 27 H 0.049 0.951 28 H 0.069 0.931 29 H 0.148 0.852 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.062 0.938 37 H 0.106 0.894 38 H 0.067 0.933 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.177 2.994 10.014 13.909 hybrid contribution 0.622 -0.644 0.004 0.895 sum -8.555 2.350 10.017 13.381 Atomic orbital electron populations 1.22046 0.99126 0.99510 1.00482 1.22261 0.91952 1.02003 1.02612 1.19249 0.95276 0.88522 0.85793 0.94724 1.21200 0.91083 1.36000 1.05143 0.91986 1.24938 0.98172 0.95543 0.95811 1.69883 1.34667 1.39335 1.09611 0.86478 0.85720 0.77473 0.77934 1.19796 1.21233 1.21157 1.60615 1.18297 1.41258 1.07928 1.22639 0.91406 0.97219 0.94119 0.88529 1.23202 1.02234 0.91604 1.03591 1.22436 0.95392 1.05775 0.95451 1.21075 1.01050 0.95259 0.94540 1.22199 0.96668 0.98135 1.02226 1.22463 0.93405 1.00405 0.85030 1.87964 1.77821 1.29132 1.34854 1.22129 0.92160 0.83090 1.00074 0.95045 0.93016 0.94091 0.88417 0.95093 0.93127 0.85176 0.88524 0.89592 0.90089 0.92185 0.91199 0.90685 0.93752 0.89434 0.93335 0.89145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 8.58 37.15 0.32 -2.83 16 2 C -0.15 -3.53 5.24 -26.74 -0.14 -3.67 16 3 C 0.22 5.45 2.16 -68.86 -0.15 5.30 16 4 H 0.03 0.96 7.74 -51.93 -0.40 0.56 16 5 C -0.50 -13.68 8.84 -34.44 -0.30 -13.99 16 6 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.06 1.55 5.29 -17.82 -0.09 1.45 16 8 N -0.90 -25.58 11.29 55.43 0.63 -24.95 16 9 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 13 N -0.65 -13.69 6.00 -101.05 -0.61 -14.29 16 14 C 0.06 1.04 3.71 -67.81 -0.25 0.79 16 15 H 0.10 1.86 6.07 -51.93 -0.32 1.54 16 16 C -0.17 -2.57 9.94 -26.79 -0.27 -2.84 16 17 C -0.19 -2.77 2.12 -154.50 -0.33 -3.10 16 18 C -0.08 -1.11 5.16 -26.39 -0.14 -1.24 16 19 C -0.15 -1.96 6.15 -26.50 -0.16 -2.12 16 20 C 0.06 0.77 6.72 37.19 0.25 1.02 16 21 O -0.38 -5.57 10.77 -35.23 -0.38 -5.95 16 22 C 0.10 1.37 6.63 37.25 0.25 1.62 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 1.00 5.76 -51.93 -0.30 0.70 16 25 H 0.04 0.84 7.92 -51.93 -0.41 0.43 16 26 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 27 H 0.03 0.72 8.04 -51.93 -0.42 0.30 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.33 6.66 6.49 -39.29 -0.25 6.40 16 30 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.21 6.71 -51.93 -0.35 0.87 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.18 8.08 -51.93 -0.42 0.76 16 LS Contribution 301.40 15.07 4.54 4.54 Total: -1.00 -28.38 301.40 -8.37 -36.75 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -6.52 Total: 6.99 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -1.02 Total: -19.60 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.02 Total: -39.25 kcal Atomic # 8 Polarization: -5.57 SS G_CDS: -0.38 Total: -5.95 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.38 -8.37 -36.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165048.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.550 kcal (2) G-P(sol) polarization free energy of solvation -28.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds