Wall clock time and date at job start Mon Mar 30 2020 17:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 H 1.08995 * 109.47524 * 304.99884 * 3 2 1 5 5 C 1.50706 * 109.47011 * 184.99952 * 3 2 1 6 6 H 1.08004 * 119.99710 * 239.99761 * 5 3 2 7 7 C 1.37875 * 119.99843 * 60.00115 * 5 3 2 8 8 N 1.31509 * 120.00465 * 0.02562 * 7 5 3 9 9 Si 1.86808 * 119.99940 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46938 * 0.02562 * 9 7 5 11 11 H 1.48494 * 109.46969 * 120.00068 * 9 7 5 12 12 H 1.48500 * 109.47218 * 240.00334 * 9 7 5 13 13 N 1.46902 * 109.47083 * 65.00396 * 3 2 1 14 14 C 1.46906 * 110.99573 * 274.99770 * 13 3 2 15 15 H 1.08998 * 115.55615 * 9.41568 * 14 13 3 16 16 C 1.53053 * 117.50510 * 223.71188 * 14 13 3 17 17 C 1.52754 * 117.50527 * 155.12199 * 14 13 3 18 18 C 1.53267 * 117.76469 * 359.66271 * 17 14 13 19 19 C 1.53394 * 108.36010 * 265.39992 * 18 17 14 20 20 C 1.53058 * 109.08476 * 306.34893 * 19 18 17 21 21 O 1.42835 * 109.82322 * 60.76233 * 20 19 18 22 22 C 1.43139 * 114.08758 * 295.76560 * 21 20 19 23 23 H 1.09004 * 109.47336 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47379 * 299.99849 * 1 2 3 25 25 H 1.09003 * 109.47600 * 60.00114 * 1 2 3 26 26 H 1.08996 * 109.47379 * 240.00150 * 2 1 3 27 27 H 1.09003 * 109.47600 * 119.99886 * 2 1 3 28 28 H 0.96994 * 120.00796 * 179.97438 * 8 7 5 29 29 H 1.00896 * 111.00219 * 38.95409 * 13 3 2 30 30 H 1.09003 * 117.50465 * 0.02562 * 16 14 13 31 31 H 1.09001 * 117.50580 * 145.02734 * 16 14 13 32 32 H 1.08997 * 109.68990 * 25.11993 * 18 17 14 33 33 H 1.09001 * 109.69076 * 145.68379 * 18 17 14 34 34 H 1.09000 * 109.54062 * 186.46596 * 19 18 17 35 35 H 1.09005 * 109.53847 * 66.22970 * 19 18 17 36 36 H 1.09003 * 109.41021 * 300.65365 * 20 19 18 37 37 H 1.08995 * 109.35891 * 180.83603 * 20 19 18 38 38 H 1.08999 * 109.59287 * 297.66202 * 22 21 20 39 39 H 1.08998 * 109.59356 * 177.21445 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1471 1.8889 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3375 -2.1733 9 14 6.0049 0.8812 -1.3818 10 1 6.5987 1.5462 -0.1942 11 1 6.4970 -0.5174 -1.4630 12 1 6.3990 1.6168 -2.6102 13 7 1.6513 2.0992 1.2553 14 6 0.2912 2.6467 1.1638 15 1 -0.2737 2.3570 0.2778 16 6 0.0554 4.0512 1.7245 17 6 -0.4849 2.8293 2.4668 18 6 0.2064 2.4219 3.7726 19 6 -0.2094 0.9848 4.1114 20 6 -1.7373 0.8952 4.1223 21 8 -2.2515 1.2331 2.8332 22 6 -1.9967 2.5852 2.4387 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 3.8292 -0.0603 -2.9503 29 1 1.7343 1.4653 2.0358 30 1 0.9096 4.5690 2.1608 31 1 -0.6646 4.6854 1.2073 32 1 1.2879 2.4712 3.6466 33 1 -0.1011 3.0920 4.5755 34 1 0.1785 0.7150 5.0937 35 1 0.1903 0.3030 3.3606 36 1 -2.1355 1.5876 4.8641 37 1 -2.0379 -0.1210 4.3772 38 1 -2.4901 3.2672 3.1312 39 1 -2.3747 2.7489 1.4295 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165048.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:46:57 Heat of formation + Delta-G solvation = -49.026874 kcal Electronic energy + Delta-G solvation = -18296.110709 eV Core-core repulsion = 15624.189397 eV Total energy + Delta-G solvation = -2671.921312 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.91207 -38.40891 -36.53513 -33.96520 -33.51551 -31.50966 -29.02096 -28.02501 -26.07531 -24.79973 -23.06516 -22.08839 -21.68306 -19.86293 -18.35139 -17.16171 -17.04941 -16.70357 -16.29452 -15.85378 -15.48285 -15.13785 -14.86228 -14.24435 -14.05520 -13.76792 -13.58415 -13.21820 -13.14793 -12.85343 -12.58727 -12.52259 -12.28727 -12.11231 -11.99893 -11.94213 -11.59641 -11.49268 -11.30511 -10.87122 -10.48543 -10.41588 -10.37608 -8.75621 -8.08810 -6.20451 1.40824 1.42466 1.54705 2.43396 2.72836 3.17962 3.20641 3.45102 3.83520 3.86723 3.99844 4.12943 4.25047 4.38804 4.45950 4.52914 4.57085 4.64445 4.67095 4.73431 4.75310 4.89582 4.93301 5.01784 5.04353 5.15702 5.17242 5.23761 5.37154 5.39902 5.43321 5.56769 5.73119 5.86594 6.30678 6.32326 6.67458 6.84854 6.95817 7.49330 8.96096 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.035546 B = 0.006534 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.529478 B = 4284.571981 C = 4427.277846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.139 4.139 3 C 0.229 3.771 4 H -0.002 1.002 5 C -0.517 4.517 6 H 0.053 0.947 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.960 3.040 10 H -0.269 1.269 11 H -0.280 1.280 12 H -0.282 1.282 13 N -0.652 5.652 14 C 0.021 3.979 15 H 0.080 0.920 16 C -0.157 4.157 17 C -0.163 4.163 18 C -0.083 4.083 19 C -0.152 4.152 20 C 0.060 3.940 21 O -0.401 6.401 22 C 0.101 3.899 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.033 0.967 26 H 0.065 0.935 27 H 0.029 0.971 28 H 0.260 0.740 29 H 0.330 0.670 30 H 0.091 0.909 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.076 0.924 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.194 3.110 12.270 16.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.179 4.179 3 C 0.120 3.880 4 H 0.016 0.984 5 C -0.556 4.556 6 H 0.071 0.929 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.785 3.215 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.208 1.208 13 N -0.282 5.282 14 C -0.090 4.090 15 H 0.098 0.902 16 C -0.195 4.195 17 C -0.165 4.165 18 C -0.121 4.121 19 C -0.189 4.189 20 C -0.016 4.016 21 O -0.320 6.320 22 C 0.024 3.976 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.084 0.916 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.150 0.850 30 H 0.110 0.890 31 H 0.124 0.876 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.947 3.477 11.827 15.840 hybrid contribution 0.823 -0.768 -0.526 1.243 sum -9.124 2.709 11.300 14.774 Atomic orbital electron populations 1.21874 0.96527 1.00451 1.00735 1.22060 0.94194 1.00833 1.00798 1.18925 0.93844 0.88878 0.86360 0.98387 1.21511 0.92668 1.36199 1.05184 0.92892 1.25703 1.02563 0.95131 0.95472 1.70016 1.36355 1.39728 1.09961 0.85484 0.80434 0.77631 0.77904 1.19360 1.20584 1.20759 1.60497 1.20863 1.40638 1.06163 1.22576 0.90529 0.99875 0.95995 0.90190 1.23243 1.02452 0.90848 1.02971 1.22529 0.96181 1.03734 0.94040 1.21126 0.99850 0.96524 0.94588 1.22184 0.97447 0.96729 1.02583 1.22653 0.92590 1.01901 0.84503 1.87946 1.78062 1.29664 1.36323 1.22228 0.90903 0.83391 1.01039 0.93635 0.91747 0.94801 0.91623 0.95264 0.93051 0.85008 0.89011 0.87561 0.91930 0.89707 0.88898 0.93461 0.91432 0.88142 0.90599 0.89162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.72 8.58 71.98 0.62 -5.10 16 2 C -0.14 -6.80 5.24 30.59 0.16 -6.64 16 3 C 0.23 11.79 2.16 44.17 0.10 11.89 16 4 H 0.00 -0.11 7.74 -2.39 -0.02 -0.12 16 5 C -0.52 -29.33 8.84 25.60 0.23 -29.11 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.53 5.29 84.65 0.45 0.98 16 8 N -0.92 -53.93 11.29 21.45 0.24 -53.69 16 9 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 10 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.65 -27.99 6.00 -473.62 -2.84 -30.84 16 14 C 0.02 0.77 3.71 44.85 0.17 0.94 16 15 H 0.08 3.15 6.07 -2.39 -0.01 3.13 16 16 C -0.16 -4.59 9.94 30.56 0.30 -4.29 16 17 C -0.16 -4.48 2.12 -52.17 -0.11 -4.59 16 18 C -0.08 -2.07 5.16 30.82 0.16 -1.91 16 19 C -0.15 -3.49 6.15 30.75 0.19 -3.30 16 20 C 0.06 1.25 6.72 72.00 0.48 1.73 16 21 O -0.40 -10.74 10.77 -148.98 -1.61 -12.34 16 22 C 0.10 2.43 6.63 72.04 0.48 2.91 16 23 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 24 H 0.06 2.48 5.76 -2.39 -0.01 2.47 16 25 H 0.03 1.41 7.92 -2.39 -0.02 1.39 16 26 H 0.07 3.65 5.95 -2.39 -0.01 3.64 16 27 H 0.03 1.39 8.04 -2.39 -0.02 1.37 16 28 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.33 13.62 6.49 -89.70 -0.58 13.04 16 30 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 31 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.06 1.80 6.71 -2.39 -0.02 1.79 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.05 1.35 7.93 -2.38 -0.02 1.33 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.09 2.17 8.08 -2.39 -0.02 2.15 16 Total: -1.00 -62.10 301.40 1.47 -60.62 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: 0.44 Total: 26.02 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 3.22 Total: -36.49 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -2.60 Total: -84.53 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -1.61 Total: -12.34 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -62.10 1.47 -60.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165048.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.595 kcal (2) G-P(sol) polarization free energy of solvation -62.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds