Wall clock time and date at job start Mon Mar 30 2020 17:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47121 * 2 1 4 4 H 1.08998 * 109.47030 * 55.15255 * 3 2 1 5 5 C 1.50698 * 109.47139 * 175.15942 * 3 2 1 6 6 H 1.07998 * 119.99680 * 120.00075 * 5 3 2 7 7 C 1.37874 * 119.99793 * 299.99624 * 5 3 2 8 8 N 1.31508 * 120.00434 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99755 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47005 * 89.99967 * 9 7 5 11 11 H 1.48498 * 109.46939 * 210.00190 * 9 7 5 12 12 H 1.48503 * 109.46897 * 329.99890 * 9 7 5 13 13 N 1.46906 * 109.46862 * 295.15911 * 3 2 1 14 14 C 1.44088 * 110.95188 * 177.20132 * 13 3 2 15 15 C 1.52261 * 104.80090 * 224.98692 * 14 13 3 16 16 C 1.46818 * 114.41644 * 266.84421 * 15 14 13 17 17 C 1.54644 * 106.17030 * 58.36735 * 16 15 14 18 18 O 1.20755 * 120.66653 * 114.14245 * 17 16 15 19 19 C 1.48160 * 118.66528 * 294.12251 * 17 16 15 20 20 H 1.08995 * 108.04199 * 325.53613 * 19 17 16 21 21 C 1.53004 * 108.06575 * 208.99519 * 19 17 16 22 22 C 1.48788 * 110.99938 * 301.66543 * 13 3 2 23 23 H 1.09002 * 109.46947 * 305.05469 * 1 2 3 24 24 H 1.08993 * 109.47055 * 65.05261 * 1 2 3 25 25 H 1.08993 * 109.46932 * 185.05651 * 1 2 3 26 26 H 1.08998 * 109.47323 * 239.99798 * 2 1 3 27 27 H 1.09000 * 109.47245 * 119.99456 * 2 1 3 28 28 H 0.96994 * 120.00417 * 179.97438 * 8 7 5 29 29 H 1.09008 * 110.36498 * 106.17862 * 14 13 3 30 30 H 1.09002 * 110.53062 * 343.88388 * 14 13 3 31 31 H 1.09004 * 108.48820 * 145.56734 * 15 14 13 32 32 H 1.08998 * 108.36544 * 28.03259 * 15 14 13 33 33 H 1.09004 * 110.10782 * 299.19860 * 16 15 14 34 34 H 1.09004 * 110.10021 * 177.53142 * 16 15 14 35 35 H 1.09004 * 109.47303 * 293.26499 * 21 19 17 36 36 H 1.09003 * 109.46885 * 53.25966 * 21 19 17 37 37 H 1.08998 * 109.46923 * 173.26238 * 21 19 17 38 38 H 1.08997 * 109.19953 * 76.63311 * 22 13 3 39 39 H 1.09004 * 109.19797 * 317.29461 * 22 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6075 1.9808 0.8434 5 6 3.5422 1.4442 0.1199 6 1 4.1454 1.8895 -0.6574 7 6 4.1465 0.8774 1.2220 8 7 3.4119 0.3348 2.1683 9 14 6.0086 0.8801 1.3709 10 1 6.4471 2.1124 2.0739 11 1 6.4452 -0.3116 2.1418 12 1 6.6136 0.8416 0.0153 13 7 1.6481 2.1004 -1.2537 14 6 2.0565 3.4822 -1.2600 15 6 0.8465 4.2430 -1.7848 16 6 0.8546 4.4699 -3.2353 17 6 0.9271 3.0706 -3.8897 18 8 0.0058 2.6497 -4.5472 19 6 2.1497 2.2570 -3.6939 20 1 3.0033 2.9337 -3.6575 21 6 2.3180 1.3519 -4.9161 22 6 2.1882 1.3688 -2.4313 23 1 -0.3633 0.5903 0.8413 24 1 -0.3633 0.4334 -0.9317 25 1 -0.3633 -1.0236 0.0906 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5137 0.8900 28 1 3.8370 -0.0644 2.9434 29 1 2.9098 3.6225 -1.9237 30 1 2.3037 3.8124 -0.2510 31 1 0.8023 5.2101 -1.2837 32 1 -0.0509 3.6804 -1.5277 33 1 1.7259 5.0611 -3.5173 34 1 -0.0598 4.9791 -3.5399 35 1 1.5070 0.6241 -4.9437 36 1 2.2941 1.9571 -5.8224 37 1 3.2727 0.8299 -4.8528 38 1 1.5890 0.4746 -2.6034 39 1 3.2188 1.0764 -2.2299 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165325.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:47:05 Heat of formation + Delta-G solvation = -57.010234 kcal Electronic energy + Delta-G solvation = -18564.863908 eV Core-core repulsion = 15892.596411 eV Total energy + Delta-G solvation = -2672.267496 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27974 -39.03781 -36.03657 -34.67135 -33.79863 -32.41134 -28.62019 -28.02179 -25.82408 -25.22190 -24.02423 -21.55396 -21.02791 -19.65872 -18.31926 -17.42000 -16.98895 -16.52029 -16.31400 -15.67648 -15.24664 -14.95451 -14.41105 -14.27620 -14.12501 -13.62117 -13.50610 -13.46695 -13.15910 -12.95207 -12.79462 -12.60107 -12.42136 -12.11504 -12.07091 -11.88594 -11.66726 -11.61350 -11.44397 -11.17669 -10.87703 -10.40584 -10.25491 -8.89692 -7.99280 -6.22176 1.08348 1.39921 1.42941 1.50187 2.42650 3.12258 3.19544 3.39528 3.97387 4.02091 4.05744 4.24279 4.26654 4.55996 4.56493 4.68481 4.72472 4.79761 4.85580 4.88849 4.90564 4.98271 5.03998 5.11744 5.18185 5.24584 5.25251 5.33280 5.40911 5.46671 5.57145 5.66159 5.82680 6.05730 6.21429 6.44915 6.63806 6.74405 6.99545 7.48880 8.95299 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.025975 B = 0.008193 C = 0.007733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.702661 B = 3416.728094 C = 3620.185759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.109 4.109 3 C 0.220 3.780 4 H 0.008 0.992 5 C -0.546 4.546 6 H 0.056 0.944 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.269 1.269 13 N -0.539 5.539 14 C 0.059 3.941 15 C -0.110 4.110 16 C -0.146 4.146 17 C 0.381 3.619 18 O -0.496 6.496 19 C -0.149 4.149 20 H 0.105 0.895 21 C -0.135 4.135 22 C 0.084 3.916 23 H 0.034 0.966 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.030 0.970 27 H 0.063 0.937 28 H 0.260 0.740 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.072 6.270 -9.507 11.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.147 4.147 3 C 0.113 3.887 4 H 0.026 0.974 5 C -0.585 4.585 6 H 0.075 0.925 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.772 3.228 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.194 1.194 13 N -0.262 5.262 14 C -0.070 4.070 15 C -0.148 4.148 16 C -0.183 4.183 17 C 0.259 3.741 18 O -0.371 6.371 19 C -0.169 4.169 20 H 0.123 0.877 21 C -0.193 4.193 22 C -0.043 4.043 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.101 0.899 32 H 0.072 0.928 33 H 0.134 0.866 34 H 0.114 0.886 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.060 5.945 -9.705 11.566 hybrid contribution 1.912 -0.367 0.760 2.090 sum -0.149 5.578 -8.944 10.542 Atomic orbital electron populations 1.21554 0.96789 0.99477 1.00392 1.21479 0.94050 0.98817 1.00385 1.19174 0.91967 0.91187 0.86416 0.97444 1.21977 0.93702 1.37502 1.05299 0.92546 1.25607 1.01564 0.95011 0.95686 1.69999 1.36266 1.38964 1.09876 0.85763 0.81690 0.77304 0.78093 1.20441 1.21481 1.19385 1.62719 1.58103 1.02451 1.02945 1.21542 0.95945 0.89086 1.00407 1.20340 0.99079 1.00943 0.94483 1.21760 1.05727 0.94491 0.96341 1.25221 0.85481 0.89900 0.73497 1.90316 1.39061 1.73913 1.33854 1.21631 0.98954 0.99081 0.97206 0.87689 1.21704 1.02369 0.99429 0.95780 1.22455 0.98959 0.95401 0.87519 0.94634 0.93306 0.93895 0.95090 0.91880 0.93069 0.92661 0.92670 0.89913 0.92771 0.86588 0.88639 0.93161 0.91645 0.90971 0.92620 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 9.74 71.98 0.70 -4.39 16 2 C -0.11 -5.11 5.02 30.60 0.15 -4.95 16 3 C 0.22 10.44 1.55 44.17 0.07 10.51 16 4 H 0.01 0.41 8.04 -2.39 -0.02 0.39 16 5 C -0.55 -27.62 6.86 25.60 0.18 -27.45 16 6 H 0.06 2.79 6.69 -2.91 -0.02 2.77 16 7 C 0.02 1.11 5.29 84.65 0.45 1.56 16 8 N -0.91 -50.64 11.29 21.45 0.24 -50.39 16 9 Si 0.94 41.76 29.54 68.60 2.03 43.79 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 N -0.54 -21.10 3.45 -876.09 -3.02 -24.12 16 14 C 0.06 2.01 4.62 86.58 0.40 2.41 16 15 C -0.11 -3.01 5.13 28.43 0.15 -2.87 16 16 C -0.15 -3.36 6.09 29.24 0.18 -3.19 16 17 C 0.38 11.28 5.86 29.63 0.17 11.45 16 18 O -0.50 -17.63 16.93 -1.44 -0.02 -17.65 16 19 C -0.15 -4.30 2.00 -11.83 -0.02 -4.33 16 20 H 0.11 2.63 6.87 -2.39 -0.02 2.61 16 21 C -0.14 -3.52 8.41 71.98 0.61 -2.91 16 22 C 0.08 3.06 4.07 86.42 0.35 3.41 16 23 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.05 1.93 7.89 -2.39 -0.02 1.91 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.03 1.42 6.50 -2.39 -0.02 1.40 16 27 H 0.06 3.36 5.95 -2.39 -0.01 3.34 16 28 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 29 H 0.06 1.72 5.92 -2.38 -0.01 1.70 16 30 H 0.05 2.10 7.41 -2.39 -0.02 2.08 16 31 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.05 1.73 7.79 -2.39 -0.02 1.71 16 33 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 1.44 7.96 -2.39 -0.02 1.42 16 36 H 0.06 1.51 8.11 -2.39 -0.02 1.49 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 38 H 0.06 2.13 7.01 -2.39 -0.02 2.11 16 39 H 0.05 1.89 6.27 -2.38 -0.01 1.88 16 Total: -1.00 -58.59 296.73 3.61 -54.98 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 1.01 Total: 14.15 kcal Atomic # 6 Polarization: -24.12 SS G_CDS: 3.38 Total: -20.75 kcal Atomic # 7 Polarization: -71.74 SS G_CDS: -2.78 Total: -74.52 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.02 Total: -17.65 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -58.59 3.61 -54.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165325.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.035 kcal (2) G-P(sol) polarization free energy of solvation -58.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds