Wall clock time and date at job start Mon Mar 30 2020 17:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47449 * 2 1 4 4 H 1.09002 * 109.47106 * 55.00423 * 3 2 1 5 5 C 1.50694 * 109.47355 * 175.00473 * 3 2 1 6 6 H 1.08000 * 120.00563 * 120.00152 * 5 3 2 7 7 C 1.37885 * 119.99902 * 299.99988 * 5 3 2 8 8 N 1.31516 * 119.99913 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99854 * 179.72538 * 7 5 3 10 10 H 1.48504 * 109.47032 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46816 * 120.00323 * 9 7 5 12 12 H 1.48495 * 109.46630 * 240.00111 * 9 7 5 13 13 N 1.46903 * 109.47096 * 295.00530 * 3 2 1 14 14 C 1.47188 * 110.99996 * 297.76013 * 13 3 2 15 15 C 1.53108 * 107.38030 * 169.68918 * 14 13 3 16 16 C 1.51089 * 110.67996 * 60.12078 * 15 14 13 17 17 H 1.09010 * 109.50508 * 186.67600 * 16 15 14 18 18 C 1.53454 * 112.80043 * 65.56127 * 16 15 14 19 19 O 1.43609 * 106.92767 * 214.87191 * 18 16 15 20 20 C 1.45907 * 110.08724 * 358.63093 * 19 18 16 21 21 C 1.54277 * 113.05636 * 309.03570 * 16 15 14 22 22 H 1.08997 * 112.77409 * 278.92747 * 21 16 15 23 23 C 1.46461 * 110.99988 * 174.99528 * 13 3 2 24 24 H 1.09010 * 109.46804 * 299.99684 * 1 2 3 25 25 H 1.09002 * 109.47653 * 59.99255 * 1 2 3 26 26 H 1.08997 * 109.47578 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46939 * 240.00609 * 2 1 3 28 28 H 1.09001 * 109.47644 * 120.00188 * 2 1 3 29 29 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.72351 * 290.58151 * 14 13 3 31 31 H 1.08998 * 109.72029 * 51.24360 * 14 13 3 32 32 H 1.09000 * 110.44177 * 299.17275 * 15 14 13 33 33 H 1.09002 * 108.35257 * 179.71890 * 15 14 13 34 34 H 1.09004 * 109.96656 * 334.23728 * 18 16 15 35 35 H 1.08996 * 109.96899 * 95.49928 * 18 16 15 36 36 H 1.08997 * 110.44251 * 266.53440 * 20 19 18 37 37 H 1.09003 * 111.24885 * 143.55207 * 20 19 18 38 38 H 1.08997 * 109.16154 * 307.56754 * 23 13 3 39 39 H 1.09004 * 109.15624 * 66.80226 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4442 0.1237 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3364 2.1728 9 14 6.0054 0.8736 1.3775 10 1 6.5992 1.5346 0.1877 11 1 6.4052 1.6101 2.6035 12 1 6.4917 -0.5270 1.4607 13 7 1.6513 2.0993 -1.2552 14 6 2.2645 1.4289 -2.4132 15 6 1.6101 2.0024 -3.6730 16 6 1.8403 3.4930 -3.7625 17 1 1.2700 3.8999 -4.5977 18 6 3.3188 3.8559 -3.9550 19 8 3.5449 5.0814 -3.2411 20 6 2.3021 5.5431 -2.6320 21 6 1.4615 4.2416 -2.4677 22 1 0.3915 4.4336 -2.3890 23 6 2.0196 3.5168 -1.2418 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.8294 -0.0614 2.9497 30 1 3.3400 1.6060 -2.4138 31 1 2.0675 0.3580 -2.3651 32 1 0.5379 1.8064 -3.6680 33 1 2.0570 1.5196 -4.5421 34 1 3.9517 3.0666 -3.5493 35 1 3.5324 3.9973 -5.0144 36 1 1.7914 6.2435 -3.2929 37 1 2.4850 6.0017 -1.6602 38 1 1.6216 3.9813 -0.3396 39 1 3.1061 3.6040 -1.2394 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165791.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:47:14 Heat of formation + Delta-G solvation = -49.103642 kcal Electronic energy + Delta-G solvation = -18709.044497 eV Core-core repulsion = 16037.119856 eV Total energy + Delta-G solvation = -2671.924641 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.04846 -36.94421 -34.04101 -31.92524 -31.40806 -30.48138 -27.54626 -26.40267 -24.09845 -23.26959 -22.06865 -21.39947 -19.23391 -18.46246 -16.29719 -16.07931 -15.43695 -15.28498 -14.50207 -14.46313 -13.98314 -13.21016 -13.10938 -12.84819 -12.62488 -12.13238 -11.95148 -11.70081 -11.45332 -11.22473 -11.10504 -10.98454 -10.70351 -10.55461 -10.28577 -10.17257 -10.06941 -9.66134 -9.60729 -9.36171 -9.14299 -9.03045 -8.34890 -7.11785 -5.97803 -4.11079 3.26605 3.35475 3.39993 4.07233 4.41048 4.70750 4.90292 5.02770 5.25014 5.30221 5.47362 5.58885 5.63868 5.81828 5.89588 5.90837 5.98587 6.04140 6.23712 6.30980 6.33684 6.39921 6.46691 6.54106 6.65255 6.72117 6.80468 6.90848 7.10877 7.16302 7.20112 7.34680 7.62235 7.77052 7.99851 8.16867 8.33977 8.47486 8.99569 9.56794 11.01140 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.022264 B = 0.009616 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.320087 B = 2911.168250 C = 3625.417373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.212 3.788 4 H 0.037 0.963 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.885 3.115 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.528 5.528 14 C 0.056 3.944 15 C -0.102 4.102 16 C -0.111 4.111 17 H 0.066 0.934 18 C 0.055 3.945 19 O -0.390 6.390 20 C 0.052 3.948 21 C -0.111 4.111 22 H 0.093 0.907 23 C 0.067 3.933 24 H 0.038 0.962 25 H 0.047 0.953 26 H 0.024 0.976 27 H 0.033 0.967 28 H 0.092 0.908 29 H 0.260 0.740 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.277 4.773 -9.529 11.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.150 4.150 3 C 0.106 3.894 4 H 0.055 0.945 5 C -0.580 4.580 6 H 0.075 0.925 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.252 5.252 14 C -0.073 4.073 15 C -0.140 4.140 16 C -0.129 4.129 17 H 0.085 0.915 18 C -0.022 4.022 19 O -0.310 6.310 20 C -0.025 4.025 21 C -0.130 4.130 22 H 0.112 0.888 23 C -0.062 4.062 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.043 0.957 27 H 0.052 0.948 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.081 0.919 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.584 4.740 -9.373 11.460 hybrid contribution 1.768 -0.075 0.239 1.786 sum -2.815 4.665 -9.134 10.636 Atomic orbital electron populations 1.21706 0.98864 0.98368 1.00565 1.21623 0.92242 0.99202 1.01953 1.19296 0.93085 0.91163 0.85882 0.94469 1.21784 0.92867 1.37880 1.05473 0.92549 1.24903 0.97747 0.95043 0.95701 1.69884 1.34657 1.38437 1.09439 0.86652 0.86354 0.77664 0.78054 1.19874 1.21035 1.21032 1.62754 1.57034 1.00960 1.04422 1.22112 0.96567 0.98856 0.89748 1.21095 1.01533 0.93047 0.98327 1.21861 0.95837 0.97624 0.97626 0.91523 1.23068 0.96367 0.87115 0.95622 1.88777 1.31989 1.40020 1.70227 1.23969 0.84822 0.95930 0.97743 1.22861 1.00029 0.94358 0.95743 0.88840 1.21788 0.98879 0.90375 0.95132 0.94254 0.93392 0.95654 0.94827 0.88963 0.92993 0.94055 0.90913 0.91246 0.92706 0.90982 0.92225 0.92604 0.89513 0.91926 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.80 37.15 0.36 -2.40 16 2 C -0.11 -2.61 5.11 -26.73 -0.14 -2.74 16 3 C 0.21 5.13 1.74 -68.87 -0.12 5.01 16 4 H 0.04 1.01 8.05 -51.93 -0.42 0.59 16 5 C -0.54 -14.35 7.22 -34.44 -0.25 -14.59 16 6 H 0.06 1.53 5.77 -52.49 -0.30 1.23 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.89 -24.77 11.29 55.43 0.63 -24.15 16 9 Si 0.88 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 13 N -0.53 -10.81 4.10 -228.12 -0.94 -11.74 16 14 C 0.06 1.05 4.62 -3.61 -0.02 1.03 16 15 C -0.10 -1.53 5.55 -27.64 -0.15 -1.68 16 16 C -0.11 -1.59 2.87 -90.68 -0.26 -1.85 16 17 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 18 C 0.05 0.84 6.82 37.39 0.26 1.10 16 19 O -0.39 -6.69 11.06 -35.23 -0.39 -7.07 16 20 C 0.05 0.75 7.15 38.65 0.28 1.02 16 21 C -0.11 -1.69 3.85 -88.47 -0.34 -2.03 16 22 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 23 C 0.07 1.29 4.04 -4.08 -0.02 1.27 16 24 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 25 H 0.05 0.92 7.75 -51.93 -0.40 0.52 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.03 0.76 6.05 -51.93 -0.31 0.45 16 28 H 0.09 2.42 5.95 -51.93 -0.31 2.11 16 29 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.04 0.86 5.23 -51.93 -0.27 0.59 16 31 H 0.07 1.42 5.90 -51.93 -0.31 1.11 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 1.22 6.43 -51.93 -0.33 0.89 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.21 7.98 -51.93 -0.41 0.80 16 38 H 0.06 1.23 8.03 -51.93 -0.42 0.81 16 39 H 0.04 0.98 6.00 -51.93 -0.31 0.66 16 LS Contribution 287.94 15.07 4.34 4.34 Total: -1.00 -27.71 287.94 -8.19 -35.90 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.32 Total: 0.58 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -0.49 Total: -14.11 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.31 Total: -35.89 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -0.39 Total: -7.07 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.71 -8.19 -35.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165791.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.204 kcal (2) G-P(sol) polarization free energy of solvation -27.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds