Wall clock time and date at job start Mon Mar 30 2020 17:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47449 * 2 1 4 4 H 1.09002 * 109.47106 * 55.00423 * 3 2 1 5 5 C 1.50694 * 109.47355 * 175.00473 * 3 2 1 6 6 H 1.08000 * 120.00563 * 120.00152 * 5 3 2 7 7 C 1.37885 * 119.99902 * 299.99988 * 5 3 2 8 8 N 1.31516 * 119.99913 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99854 * 179.72538 * 7 5 3 10 10 H 1.48504 * 109.47032 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46816 * 120.00323 * 9 7 5 12 12 H 1.48495 * 109.46630 * 240.00111 * 9 7 5 13 13 N 1.46903 * 109.47096 * 295.00530 * 3 2 1 14 14 C 1.47188 * 110.99996 * 297.76013 * 13 3 2 15 15 C 1.53108 * 107.38030 * 169.68918 * 14 13 3 16 16 C 1.51089 * 110.67996 * 60.12078 * 15 14 13 17 17 H 1.09010 * 109.50508 * 186.67600 * 16 15 14 18 18 C 1.53454 * 112.80043 * 65.56127 * 16 15 14 19 19 O 1.43609 * 106.92767 * 214.87191 * 18 16 15 20 20 C 1.45907 * 110.08724 * 358.63093 * 19 18 16 21 21 C 1.54277 * 113.05636 * 309.03570 * 16 15 14 22 22 H 1.08997 * 112.77409 * 278.92747 * 21 16 15 23 23 C 1.46461 * 110.99988 * 174.99528 * 13 3 2 24 24 H 1.09010 * 109.46804 * 299.99684 * 1 2 3 25 25 H 1.09002 * 109.47653 * 59.99255 * 1 2 3 26 26 H 1.08997 * 109.47578 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46939 * 240.00609 * 2 1 3 28 28 H 1.09001 * 109.47644 * 120.00188 * 2 1 3 29 29 H 0.97001 * 119.99646 * 180.02562 * 8 7 5 30 30 H 1.08998 * 109.72351 * 290.58151 * 14 13 3 31 31 H 1.08998 * 109.72029 * 51.24360 * 14 13 3 32 32 H 1.09000 * 110.44177 * 299.17275 * 15 14 13 33 33 H 1.09002 * 108.35257 * 179.71890 * 15 14 13 34 34 H 1.09004 * 109.96656 * 334.23728 * 18 16 15 35 35 H 1.08996 * 109.96899 * 95.49928 * 18 16 15 36 36 H 1.08997 * 110.44251 * 266.53440 * 20 19 18 37 37 H 1.09003 * 111.24885 * 143.55207 * 20 19 18 38 38 H 1.08997 * 109.16154 * 307.56754 * 23 13 3 39 39 H 1.09004 * 109.15624 * 66.80226 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5419 1.4442 0.1237 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3364 2.1728 9 14 6.0054 0.8736 1.3775 10 1 6.5992 1.5346 0.1877 11 1 6.4052 1.6101 2.6035 12 1 6.4917 -0.5270 1.4607 13 7 1.6513 2.0993 -1.2552 14 6 2.2645 1.4289 -2.4132 15 6 1.6101 2.0024 -3.6730 16 6 1.8403 3.4930 -3.7625 17 1 1.2700 3.8999 -4.5977 18 6 3.3188 3.8559 -3.9550 19 8 3.5449 5.0814 -3.2411 20 6 2.3021 5.5431 -2.6320 21 6 1.4615 4.2416 -2.4677 22 1 0.3915 4.4336 -2.3890 23 6 2.0196 3.5168 -1.2418 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8932 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 3.8294 -0.0614 2.9497 30 1 3.3400 1.6060 -2.4138 31 1 2.0675 0.3580 -2.3651 32 1 0.5379 1.8064 -3.6680 33 1 2.0570 1.5196 -4.5421 34 1 3.9517 3.0666 -3.5493 35 1 3.5324 3.9973 -5.0144 36 1 1.7914 6.2435 -3.2929 37 1 2.4850 6.0017 -1.6602 38 1 1.6216 3.9813 -0.3396 39 1 3.1061 3.6040 -1.2394 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165791.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:47:12 Heat of formation + Delta-G solvation = -66.623410 kcal Electronic energy + Delta-G solvation = -18709.804211 eV Core-core repulsion = 16037.119856 eV Total energy + Delta-G solvation = -2672.684355 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.36994 -38.54471 -35.65484 -33.79733 -32.86877 -31.98963 -29.00320 -28.13797 -25.76784 -24.75204 -23.70873 -22.69479 -20.94390 -19.97173 -18.18956 -17.44175 -17.03430 -16.65628 -16.25212 -15.80562 -15.55864 -14.93681 -14.60780 -14.42420 -14.03606 -13.60779 -13.49892 -13.18282 -13.09415 -12.94605 -12.84432 -12.68982 -12.34528 -12.13743 -11.88030 -11.76932 -11.57011 -11.49925 -11.12126 -11.01737 -10.77448 -10.44000 -10.40697 -8.92631 -8.04594 -6.27065 1.31420 1.35071 1.44660 2.37315 2.90602 3.12716 3.39637 3.57458 3.80046 4.04342 4.29040 4.31312 4.41873 4.48460 4.53741 4.58457 4.72056 4.76019 4.77230 4.87038 4.92645 4.94403 5.02507 5.05258 5.17390 5.24116 5.30587 5.35192 5.43796 5.46908 5.51808 5.63496 5.80149 5.99281 6.08353 6.21115 6.39714 6.67908 6.95431 7.43707 8.89608 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.022264 B = 0.009616 C = 0.007721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.320087 B = 2911.168250 C = 3625.417373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.001 0.999 5 C -0.547 4.547 6 H 0.042 0.958 7 C 0.023 3.977 8 N -0.909 5.909 9 Si 0.941 3.059 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.277 1.277 13 N -0.520 5.520 14 C 0.056 3.944 15 C -0.093 4.093 16 C -0.107 4.107 17 H 0.103 0.897 18 C 0.052 3.948 19 O -0.418 6.418 20 C 0.052 3.948 21 C -0.105 4.105 22 H 0.117 0.883 23 C 0.071 3.929 24 H 0.031 0.969 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.034 0.966 28 H 0.060 0.940 29 H 0.261 0.739 30 H 0.014 0.986 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.044 0.956 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.326 5.337 -11.649 13.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.145 4.145 3 C 0.110 3.890 4 H 0.019 0.981 5 C -0.587 4.587 6 H 0.061 0.939 7 C -0.177 4.177 8 N -0.548 5.548 9 Si 0.767 3.233 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.203 1.203 13 N -0.243 5.243 14 C -0.072 4.072 15 C -0.131 4.131 16 C -0.125 4.125 17 H 0.122 0.878 18 C -0.024 4.024 19 O -0.339 6.339 20 C -0.024 4.024 21 C -0.123 4.123 22 H 0.135 0.865 23 C -0.058 4.058 24 H 0.050 0.950 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.032 0.968 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.067 0.933 39 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -5.637 5.307 -11.503 13.866 hybrid contribution 2.118 -0.231 0.918 2.320 sum -3.519 5.076 -10.585 12.255 Atomic orbital electron populations 1.21560 0.96075 0.99824 1.00748 1.21454 0.94676 0.97969 1.00376 1.19071 0.91516 0.91724 0.86702 0.98109 1.21974 0.94281 1.37353 1.05053 0.93936 1.25553 1.01425 0.95044 0.95635 1.69997 1.35981 1.39043 1.09786 0.85779 0.81992 0.77800 0.77704 1.20245 1.20672 1.20275 1.62751 1.56613 1.01567 1.03385 1.22135 0.95378 0.98585 0.91094 1.21037 1.01970 0.93571 0.96537 1.21895 0.95461 0.97029 0.98125 0.87832 1.23136 0.96716 0.85964 0.96595 1.88746 1.33773 1.40618 1.70736 1.24112 0.83975 0.95928 0.98424 1.22843 1.01155 0.94374 0.93965 0.86530 1.21780 0.96900 0.89967 0.97169 0.95016 0.92136 0.93548 0.94717 0.92116 0.92929 0.96764 0.91790 0.89895 0.90340 0.93803 0.89590 0.89161 0.89968 0.93304 0.97219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 9.80 71.98 0.71 -4.19 16 2 C -0.11 -5.03 5.11 30.59 0.16 -4.88 16 3 C 0.22 10.87 1.74 44.17 0.08 10.95 16 4 H 0.00 0.06 8.05 -2.39 -0.02 0.04 16 5 C -0.55 -30.17 7.22 25.60 0.18 -29.99 16 6 H 0.04 2.42 5.77 -2.91 -0.02 2.40 16 7 C 0.02 1.30 5.29 84.66 0.45 1.75 16 8 N -0.91 -52.29 11.29 21.45 0.24 -52.05 16 9 Si 0.94 44.74 29.54 68.60 2.03 46.77 16 10 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 N -0.52 -21.42 4.10 -875.63 -3.59 -25.01 16 14 C 0.06 2.11 4.62 86.28 0.40 2.51 16 15 C -0.09 -2.52 5.55 30.01 0.17 -2.36 16 16 C -0.11 -2.70 2.87 -10.83 -0.03 -2.73 16 17 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 18 C 0.05 1.51 6.82 72.13 0.49 2.00 16 19 O -0.42 -13.79 11.06 -148.98 -1.65 -15.44 16 20 C 0.05 1.37 7.15 72.95 0.52 1.89 16 21 C -0.10 -2.94 3.85 -9.40 -0.04 -2.98 16 22 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 23 C 0.07 2.75 4.04 86.37 0.35 3.09 16 24 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.06 2.21 7.75 -2.39 -0.02 2.19 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.03 1.60 6.05 -2.39 -0.01 1.58 16 28 H 0.06 3.27 5.95 -2.39 -0.01 3.26 16 29 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 30 H 0.01 0.61 5.23 -2.39 -0.01 0.60 16 31 H 0.06 2.48 5.90 -2.39 -0.01 2.46 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.04 1.49 6.43 -2.38 -0.02 1.48 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.08 2.22 7.98 -2.39 -0.02 2.20 16 38 H 0.05 1.97 8.03 -2.39 -0.02 1.95 16 39 H 0.01 0.44 6.00 -2.38 -0.01 0.42 16 Total: -1.00 -61.81 287.94 1.48 -60.33 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.02 Total: 10.33 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 3.43 Total: -24.93 kcal Atomic # 7 Polarization: -73.71 SS G_CDS: -3.35 Total: -77.06 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: -1.65 Total: -15.44 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -61.81 1.48 -60.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165791.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.289 kcal (2) G-P(sol) polarization free energy of solvation -61.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds