Wall clock time and date at job start Mon Mar 30 2020 17:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47017 * 2 1 4 4 H 1.08996 * 109.47040 * 177.92849 * 3 2 1 5 5 C 1.50703 * 109.46978 * 297.92620 * 3 2 1 6 6 H 1.07992 * 120.00091 * 119.99604 * 5 3 2 7 7 C 1.37882 * 120.00021 * 300.00007 * 5 3 2 8 8 N 1.31514 * 119.99848 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00168 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46919 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47368 * 119.99731 * 9 7 5 12 12 H 1.48496 * 109.47099 * 239.99826 * 9 7 5 13 13 N 1.46901 * 109.47076 * 57.92452 * 3 2 1 14 14 C 1.46355 * 110.99715 * 51.82139 * 13 3 2 15 15 C 1.53758 * 111.81972 * 181.64123 * 14 13 3 16 16 C 1.52061 * 107.03615 * 302.78416 * 15 14 13 17 17 H 1.08996 * 112.10227 * 300.25617 * 16 15 14 18 18 C 1.53558 * 114.67721 * 171.14774 * 16 15 14 19 19 C 1.55438 * 100.65233 * 208.30214 * 18 16 15 20 20 O 1.44618 * 107.31700 * 22.17639 * 19 18 16 21 21 C 1.41233 * 108.05607 * 6.31262 * 20 19 18 22 22 H 1.08992 * 108.55229 * 82.92192 * 21 20 19 23 23 C 1.47730 * 111.00024 * 178.96522 * 13 3 2 24 24 H 1.09004 * 109.46755 * 175.29428 * 1 2 3 25 25 H 1.08999 * 109.47454 * 295.29252 * 1 2 3 26 26 H 1.09000 * 109.47283 * 55.30210 * 1 2 3 27 27 H 1.09004 * 109.47373 * 119.99782 * 2 1 3 28 28 H 1.09001 * 109.47819 * 240.00266 * 2 1 3 29 29 H 0.96998 * 119.99927 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.01259 * 302.24352 * 14 13 3 31 31 H 1.08999 * 109.00940 * 61.04250 * 14 13 3 32 32 H 1.08994 * 109.93959 * 183.40913 * 15 14 13 33 33 H 1.08996 * 110.01210 * 62.20711 * 15 14 13 34 34 H 1.09000 * 110.84103 * 90.69019 * 18 16 15 35 35 H 1.09001 * 111.76746 * 326.30702 * 18 16 15 36 36 H 1.08999 * 109.87350 * 262.74695 * 19 18 16 37 37 H 1.08996 * 109.87581 * 141.60282 * 19 18 16 38 38 H 1.08997 * 109.89692 * 295.30907 * 23 13 3 39 39 H 1.09002 * 109.90008 * 56.42384 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1293 1.4428 0.0371 5 6 1.5800 2.1379 -1.2554 6 1 0.9562 3.0169 -1.1882 7 6 1.9555 1.6519 -2.4898 8 7 2.7155 0.5817 -2.5717 9 14 1.3860 2.5142 -4.0459 10 1 0.5478 3.6854 -3.6842 11 1 2.5683 2.9710 -4.8197 12 1 0.5887 1.5713 -4.8708 13 7 1.5097 2.1494 1.1736 14 6 1.7722 1.3974 2.4015 15 6 1.1892 2.1010 3.6381 16 6 1.7982 3.4934 3.6869 17 1 2.8852 3.4633 3.7610 18 6 1.1769 4.4285 4.7346 19 6 1.4211 5.8108 4.0668 20 8 1.5924 5.5799 2.6495 21 6 1.3286 4.2163 2.3931 22 1 0.2509 4.0835 2.2983 23 6 2.0020 3.5415 1.2203 24 1 -0.3633 -1.0243 -0.0843 25 1 -0.3634 0.4390 0.9291 26 1 -0.3634 0.5850 -0.8449 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.9800 0.2399 -3.4401 30 1 1.3262 0.4068 2.3134 31 1 2.8494 1.2903 2.5288 32 1 1.4534 1.5480 4.5394 33 1 0.1051 2.1722 3.5503 34 1 1.7061 4.3528 5.6845 35 1 0.1115 4.2385 4.8649 36 1 2.3207 6.2678 4.4792 37 1 0.5624 6.4606 4.2352 38 1 3.0831 3.5482 1.3591 39 1 1.7426 4.0579 0.2961 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166095.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:47:19 Heat of formation + Delta-G solvation = -40.918517 kcal Electronic energy + Delta-G solvation = -18436.184199 eV Core-core repulsion = 15764.614492 eV Total energy + Delta-G solvation = -2671.569707 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.13564 -37.26394 -34.21724 -32.37074 -31.25753 -29.57675 -28.93277 -26.27158 -24.05538 -22.49090 -22.28113 -21.08495 -19.96095 -18.88462 -16.27998 -15.93866 -15.58379 -15.17425 -14.87627 -14.27524 -14.09538 -13.47431 -13.00849 -12.82906 -12.74285 -12.19709 -11.94826 -11.85783 -11.77184 -11.25238 -10.94437 -10.85074 -10.77592 -10.62003 -10.43999 -10.23409 -9.91118 -9.81828 -9.58797 -9.37816 -9.15358 -8.78966 -8.37512 -7.11359 -5.98667 -4.01973 3.31897 3.40144 3.45152 3.87151 4.43256 4.63770 4.77728 4.88808 5.12186 5.31051 5.33671 5.45762 5.53827 5.65207 5.70793 5.80146 5.92777 6.01490 6.08214 6.15500 6.26775 6.38217 6.48330 6.51236 6.58979 6.65999 6.70209 6.77973 7.09804 7.27132 7.32650 7.42240 7.66875 7.76713 7.86719 8.19033 8.34623 8.62322 9.03772 9.62212 11.07745 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.029843 B = 0.007626 C = 0.006496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.020011 B = 3670.987489 C = 4309.065403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.114 4.114 3 C 0.223 3.777 4 H -0.002 1.002 5 C -0.495 4.495 6 H 0.063 0.937 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.535 5.535 14 C 0.055 3.945 15 C -0.103 4.103 16 C -0.132 4.132 17 H 0.083 0.917 18 C -0.148 4.148 19 C 0.051 3.949 20 O -0.375 6.375 21 C 0.079 3.921 22 H 0.064 0.936 23 C 0.082 3.918 24 H 0.016 0.984 25 H 0.039 0.961 26 H 0.060 0.940 27 H 0.014 0.986 28 H 0.094 0.906 29 H 0.259 0.741 30 H 0.079 0.921 31 H 0.016 0.984 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.026 0.974 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.501 3.897 12.526 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.152 4.152 3 C 0.118 3.882 4 H 0.015 0.985 5 C -0.533 4.533 6 H 0.082 0.918 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.263 5.263 14 C -0.074 4.074 15 C -0.140 4.140 16 C -0.151 4.151 17 H 0.102 0.898 18 C -0.186 4.186 19 C -0.026 4.026 20 O -0.294 6.294 21 C 0.021 3.979 22 H 0.081 0.919 23 C -0.046 4.046 24 H 0.035 0.965 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.033 0.967 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.034 0.966 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.847 3.966 12.182 13.124 hybrid contribution 0.612 0.206 -0.569 0.861 sum -2.235 4.172 11.613 12.540 Atomic orbital electron populations 1.21495 0.97233 0.97699 1.01525 1.21627 0.95190 0.98133 1.00289 1.19220 0.92453 0.90530 0.86010 0.98467 1.21119 1.30778 1.11889 0.89562 0.91839 1.24899 0.95209 0.95090 0.98963 1.69883 1.36455 1.22683 1.24297 0.86516 0.78433 0.79680 0.83285 1.19682 1.21207 1.21098 1.61231 1.61836 1.00468 1.02716 1.22045 0.97376 0.98090 0.89883 1.21501 1.00697 0.94144 0.97704 1.22786 1.00507 0.96209 0.95618 0.89848 1.22900 1.01697 0.95104 0.98877 1.23519 1.00707 0.96822 0.81521 1.88226 1.91634 1.26321 1.23202 1.22384 0.99687 0.80220 0.95637 0.91853 1.21495 0.95698 0.90068 0.97316 0.96507 0.94145 0.92081 0.96694 0.88807 0.93087 0.90310 0.96564 0.91938 0.91083 0.90577 0.90458 0.91343 0.91800 0.95601 0.89020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.36 37.16 0.35 -2.29 16 2 C -0.11 -2.68 4.94 -26.73 -0.13 -2.81 16 3 C 0.22 5.50 1.81 -68.86 -0.12 5.38 16 4 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 5 C -0.49 -13.23 6.66 -34.44 -0.23 -13.46 16 6 H 0.06 1.73 6.78 -52.49 -0.36 1.37 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 8 N -0.89 -25.16 11.31 55.43 0.63 -24.53 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.54 -11.25 3.75 -228.45 -0.86 -12.11 16 14 C 0.05 0.98 4.63 -3.73 -0.02 0.96 16 15 C -0.10 -1.47 5.70 -26.82 -0.15 -1.63 16 16 C -0.13 -1.91 2.82 -89.50 -0.25 -2.17 16 17 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.15 -1.71 6.60 -25.15 -0.17 -1.87 16 19 C 0.05 0.64 7.80 38.45 0.30 0.94 16 20 O -0.38 -6.44 11.38 -35.01 -0.40 -6.84 16 21 C 0.08 1.37 2.88 -26.35 -0.08 1.30 16 22 H 0.06 1.15 7.90 -51.93 -0.41 0.74 16 23 C 0.08 1.68 5.33 -4.30 -0.02 1.65 16 24 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 25 H 0.04 0.81 6.96 -51.93 -0.36 0.45 16 26 H 0.06 1.44 7.13 -51.93 -0.37 1.07 16 27 H 0.01 0.32 6.40 -51.93 -0.33 -0.02 16 28 H 0.09 2.47 6.02 -51.93 -0.31 2.16 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.08 1.42 5.44 -51.93 -0.28 1.13 16 31 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.02 7.99 -51.93 -0.41 0.61 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.84 8.12 -51.93 -0.42 0.41 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 2.05 6.48 -51.93 -0.34 1.72 16 LS Contribution 291.92 15.07 4.40 4.40 Total: -1.00 -27.92 291.92 -8.41 -36.33 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.54 Total: -1.06 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -0.62 Total: -12.48 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: -0.23 Total: -36.64 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.40 Total: -6.84 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.92 -8.41 -36.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166095.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.593 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds