Wall clock time and date at job start Mon Mar 30 2020 17:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47017 * 2 1 4 4 H 1.08996 * 109.47040 * 177.92849 * 3 2 1 5 5 C 1.50703 * 109.46978 * 297.92620 * 3 2 1 6 6 H 1.07992 * 120.00091 * 119.99604 * 5 3 2 7 7 C 1.37882 * 120.00021 * 300.00007 * 5 3 2 8 8 N 1.31514 * 119.99848 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00168 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46919 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47368 * 119.99731 * 9 7 5 12 12 H 1.48496 * 109.47099 * 239.99826 * 9 7 5 13 13 N 1.46901 * 109.47076 * 57.92452 * 3 2 1 14 14 C 1.46355 * 110.99715 * 51.82139 * 13 3 2 15 15 C 1.53758 * 111.81972 * 181.64123 * 14 13 3 16 16 C 1.52061 * 107.03615 * 302.78416 * 15 14 13 17 17 H 1.08996 * 112.10227 * 300.25617 * 16 15 14 18 18 C 1.53558 * 114.67721 * 171.14774 * 16 15 14 19 19 C 1.55438 * 100.65233 * 208.30214 * 18 16 15 20 20 O 1.44618 * 107.31700 * 22.17639 * 19 18 16 21 21 C 1.41233 * 108.05607 * 6.31262 * 20 19 18 22 22 H 1.08992 * 108.55229 * 82.92192 * 21 20 19 23 23 C 1.47730 * 111.00024 * 178.96522 * 13 3 2 24 24 H 1.09004 * 109.46755 * 175.29428 * 1 2 3 25 25 H 1.08999 * 109.47454 * 295.29252 * 1 2 3 26 26 H 1.09000 * 109.47283 * 55.30210 * 1 2 3 27 27 H 1.09004 * 109.47373 * 119.99782 * 2 1 3 28 28 H 1.09001 * 109.47819 * 240.00266 * 2 1 3 29 29 H 0.96998 * 119.99927 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.01259 * 302.24352 * 14 13 3 31 31 H 1.08999 * 109.00940 * 61.04250 * 14 13 3 32 32 H 1.08994 * 109.93959 * 183.40913 * 15 14 13 33 33 H 1.08996 * 110.01210 * 62.20711 * 15 14 13 34 34 H 1.09000 * 110.84103 * 90.69019 * 18 16 15 35 35 H 1.09001 * 111.76746 * 326.30702 * 18 16 15 36 36 H 1.08999 * 109.87350 * 262.74695 * 19 18 16 37 37 H 1.08996 * 109.87581 * 141.60282 * 19 18 16 38 38 H 1.08997 * 109.89692 * 295.30907 * 23 13 3 39 39 H 1.09002 * 109.90008 * 56.42384 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1293 1.4428 0.0371 5 6 1.5800 2.1379 -1.2554 6 1 0.9562 3.0169 -1.1882 7 6 1.9555 1.6519 -2.4898 8 7 2.7155 0.5817 -2.5717 9 14 1.3860 2.5142 -4.0459 10 1 0.5478 3.6854 -3.6842 11 1 2.5683 2.9710 -4.8197 12 1 0.5887 1.5713 -4.8708 13 7 1.5097 2.1494 1.1736 14 6 1.7722 1.3974 2.4015 15 6 1.1892 2.1010 3.6381 16 6 1.7982 3.4934 3.6869 17 1 2.8852 3.4633 3.7610 18 6 1.1769 4.4285 4.7346 19 6 1.4211 5.8108 4.0668 20 8 1.5924 5.5799 2.6495 21 6 1.3286 4.2163 2.3931 22 1 0.2509 4.0835 2.2983 23 6 2.0020 3.5415 1.2203 24 1 -0.3633 -1.0243 -0.0843 25 1 -0.3634 0.4390 0.9291 26 1 -0.3634 0.5850 -0.8449 27 1 1.8933 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 2.9800 0.2399 -3.4401 30 1 1.3262 0.4068 2.3134 31 1 2.8494 1.2903 2.5288 32 1 1.4534 1.5480 4.5394 33 1 0.1051 2.1722 3.5503 34 1 1.7061 4.3528 5.6845 35 1 0.1115 4.2385 4.8649 36 1 2.3207 6.2678 4.4792 37 1 0.5624 6.4606 4.2352 38 1 3.0831 3.5482 1.3591 39 1 1.7426 4.0579 0.2961 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166095.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:47:18 Heat of formation + Delta-G solvation = -58.308873 kcal Electronic energy + Delta-G solvation = -18436.938302 eV Core-core repulsion = 15764.614492 eV Total energy + Delta-G solvation = -2672.323810 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.42552 -38.86646 -35.85002 -33.95488 -33.04026 -30.90312 -30.40299 -28.15825 -25.73452 -24.05451 -23.74515 -22.22161 -21.39820 -20.63684 -18.17163 -17.41097 -17.10899 -16.52456 -16.28738 -16.02866 -15.59128 -15.16312 -14.49151 -14.34740 -14.17716 -13.70439 -13.50165 -13.35531 -13.32949 -12.85094 -12.61336 -12.42868 -12.38625 -12.06439 -11.93966 -11.81085 -11.64111 -11.43560 -11.35476 -10.93300 -10.74947 -10.48125 -10.36579 -8.89036 -8.08963 -6.18584 1.39375 1.42024 1.53247 2.41998 2.60954 3.19141 3.35214 3.60232 3.82933 3.86810 4.20235 4.24765 4.32301 4.40882 4.45744 4.59079 4.70218 4.73986 4.74510 4.86138 4.88940 4.92239 4.99597 5.03593 5.08260 5.10225 5.18269 5.26726 5.37555 5.46625 5.51433 5.73868 5.79474 5.90293 6.04994 6.33555 6.39370 6.78847 6.93367 7.49028 8.96544 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.029843 B = 0.007626 C = 0.006496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.020011 B = 3670.987489 C = 4309.065403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.108 4.108 3 C 0.228 3.772 4 H -0.046 1.046 5 C -0.503 4.503 6 H 0.052 0.948 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.535 5.535 14 C 0.050 3.950 15 C -0.091 4.091 16 C -0.127 4.127 17 H 0.076 0.924 18 C -0.134 4.134 19 C 0.040 3.960 20 O -0.404 6.404 21 C 0.082 3.918 22 H 0.057 0.943 23 C 0.084 3.916 24 H 0.038 0.962 25 H 0.054 0.946 26 H 0.035 0.965 27 H 0.033 0.967 28 H 0.063 0.937 29 H 0.260 0.740 30 H 0.081 0.919 31 H 0.007 0.993 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.010 0.990 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.726 4.201 14.731 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.147 4.147 3 C 0.122 3.878 4 H -0.029 1.029 5 C -0.542 4.542 6 H 0.071 0.929 7 C -0.184 4.184 8 N -0.559 5.559 9 Si 0.777 3.223 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.204 1.204 13 N -0.261 5.261 14 C -0.078 4.078 15 C -0.129 4.129 16 C -0.146 4.146 17 H 0.095 0.905 18 C -0.171 4.171 19 C -0.035 4.035 20 O -0.324 6.324 21 C 0.024 3.976 22 H 0.075 0.925 23 C -0.044 4.044 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.025 0.975 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.028 0.972 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.080 4.278 14.411 15.577 hybrid contribution 1.049 0.151 -1.229 1.623 sum -3.031 4.430 13.182 14.233 Atomic orbital electron populations 1.21353 0.95446 0.98762 1.01138 1.21485 0.96633 0.96923 0.99644 1.19004 0.89895 0.91768 0.87154 1.02858 1.21293 1.30444 1.11611 0.90853 0.92941 1.25590 0.95383 0.95725 1.01679 1.70006 1.37324 1.23726 1.24880 0.85610 0.78007 0.78757 0.79934 1.19503 1.20957 1.20391 1.61173 1.61178 1.00665 1.03094 1.22195 0.97236 0.98365 0.90026 1.21459 1.00736 0.93901 0.96789 1.22751 1.00383 0.96482 0.94953 0.90524 1.22883 1.02654 0.92746 0.98820 1.23840 1.02364 0.98119 0.79185 1.88194 1.91835 1.25934 1.26404 1.22140 0.98634 0.81148 0.95693 0.92479 1.21379 0.95101 0.90144 0.97778 0.94286 0.92654 0.94583 0.94859 0.91862 0.93048 0.90107 0.97504 0.88588 0.90421 0.87676 0.89124 0.89851 0.90023 0.97167 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.65 9.36 71.98 0.67 -3.98 16 2 C -0.11 -5.15 4.94 30.59 0.15 -5.00 16 3 C 0.23 11.67 1.81 44.17 0.08 11.75 16 4 H -0.05 -2.69 8.14 -2.39 -0.02 -2.71 16 5 C -0.50 -27.92 6.66 25.60 0.17 -27.75 16 6 H 0.05 2.97 6.78 -2.91 -0.02 2.95 16 7 C 0.01 0.82 5.30 84.66 0.45 1.27 16 8 N -0.92 -53.26 11.31 21.45 0.24 -53.02 16 9 Si 0.95 44.63 29.54 68.60 2.03 46.65 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.53 -22.84 3.75 -876.69 -3.28 -26.12 16 14 C 0.05 1.72 4.63 86.66 0.40 2.13 16 15 C -0.09 -2.33 5.70 30.54 0.17 -2.16 16 16 C -0.13 -3.35 2.82 -10.07 -0.03 -3.37 16 17 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 18 C -0.13 -2.52 6.60 31.62 0.21 -2.31 16 19 C 0.04 0.90 7.80 72.82 0.57 1.47 16 20 O -0.40 -13.53 11.38 -148.17 -1.69 -15.21 16 21 C 0.08 2.81 2.88 30.84 0.09 2.90 16 22 H 0.06 2.02 7.90 -2.39 -0.02 2.00 16 23 C 0.08 3.56 5.33 85.54 0.46 4.02 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.05 2.15 6.96 -2.39 -0.02 2.13 16 26 H 0.03 1.68 7.13 -2.39 -0.02 1.67 16 27 H 0.03 1.42 6.40 -2.38 -0.02 1.41 16 28 H 0.06 3.42 6.02 -2.39 -0.01 3.40 16 29 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 30 H 0.08 2.76 5.44 -2.39 -0.01 2.75 16 31 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.08 1.94 7.99 -2.39 -0.02 1.92 16 34 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.09 1.52 8.12 -2.39 -0.02 1.50 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.06 2.86 6.48 -2.39 -0.02 2.84 16 Total: -1.00 -62.63 291.92 1.70 -60.93 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: 1.01 Total: 7.81 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 3.39 Total: -21.05 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -3.04 Total: -79.14 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -1.69 Total: -15.21 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -62.63 1.70 -60.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166095.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.625 kcal (2) G-P(sol) polarization free energy of solvation -62.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds