Wall clock time and date at job start Mon Mar 30 2020 17:47:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47327 * 2 1 4 4 H 1.08996 * 109.47002 * 54.99967 * 3 2 1 5 5 C 1.50704 * 109.47172 * 174.99300 * 3 2 1 6 6 H 1.08005 * 119.99705 * 119.99756 * 5 3 2 7 7 C 1.37872 * 120.00327 * 300.00616 * 5 3 2 8 8 N 1.31517 * 120.00008 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00163 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47422 * 89.99472 * 9 7 5 11 11 H 1.48498 * 109.47103 * 209.99635 * 9 7 5 12 12 H 1.48500 * 109.46842 * 329.99438 * 9 7 5 13 13 N 1.46889 * 109.47194 * 294.99544 * 3 2 1 14 14 C 1.48060 * 111.00253 * 179.97438 * 13 3 2 15 15 C 1.53425 * 86.02204 * 222.75216 * 14 13 3 16 16 C 1.48060 * 111.00102 * 80.53875 * 13 3 2 17 17 C 1.52765 * 113.63618 * 137.97560 * 15 14 13 18 18 C 1.53364 * 108.74883 * 78.25973 * 17 15 14 19 19 C 1.53076 * 109.07053 * 54.75727 * 18 17 15 20 20 O 1.42865 * 109.70060 * 300.54358 * 19 18 17 21 21 C 1.43089 * 114.05569 * 62.92953 * 20 19 18 22 22 H 1.08994 * 109.47417 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47542 * 300.00464 * 1 2 3 24 24 H 1.09010 * 109.46638 * 59.99997 * 1 2 3 25 25 H 1.09002 * 109.47339 * 239.99765 * 2 1 3 26 26 H 1.09010 * 109.47125 * 119.99796 * 2 1 3 27 27 H 0.96999 * 120.00257 * 180.02562 * 8 7 5 28 28 H 1.08997 * 113.77932 * 108.47271 * 14 13 3 29 29 H 1.09002 * 113.78233 * 337.02941 * 14 13 3 30 30 H 1.09006 * 113.78206 * 22.97935 * 16 13 3 31 31 H 1.08994 * 113.78800 * 251.53654 * 16 13 3 32 32 H 1.08998 * 109.59274 * 318.48419 * 17 15 14 33 33 H 1.08994 * 109.71833 * 198.11427 * 17 15 14 34 34 H 1.08994 * 109.54192 * 294.88000 * 18 17 15 35 35 H 1.09000 * 109.53929 * 174.63322 * 18 17 15 36 36 H 1.08999 * 109.43599 * 60.61518 * 19 18 17 37 37 H 1.09001 * 109.43182 * 180.47428 * 19 18 17 38 38 H 1.08996 * 109.52575 * 181.44833 * 21 20 19 39 39 H 1.08996 * 109.57952 * 61.28306 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1240 6 1 4.1473 1.8888 -0.6522 7 6 4.1432 0.8783 1.2281 8 7 3.4060 0.3373 2.1734 9 14 6.0049 0.8812 1.3821 10 1 6.4416 2.1141 2.0852 11 1 6.4394 -0.3099 2.1553 12 1 6.6136 0.8415 0.0282 13 7 1.6515 2.0992 -1.2552 14 6 2.1286 3.5004 -1.2908 15 6 0.7489 3.8431 -1.8676 16 6 0.2445 2.5571 -1.2011 17 6 0.1398 5.1164 -1.2833 18 6 0.8008 6.3296 -1.9491 19 6 0.6609 6.2043 -3.4683 20 8 1.2894 5.0005 -3.9122 21 6 0.6954 3.8067 -3.3931 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.8290 -0.0605 2.9504 28 1 2.9502 3.6673 -1.9873 29 1 2.3114 3.9277 -0.3048 30 1 -0.1310 2.7050 -0.1885 31 1 -0.4318 1.9742 -1.8262 32 1 0.3183 5.1471 -0.2085 33 1 -0.9328 5.1330 -1.4762 34 1 1.8569 6.3618 -1.6818 35 1 0.3102 7.2427 -1.6120 36 1 -0.3958 6.1811 -3.7346 37 1 1.1364 7.0598 -3.9481 38 1 1.2453 2.9385 -3.7562 39 1 -0.3425 3.7433 -3.7198 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166255.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:47:26 Heat of formation + Delta-G solvation = -21.648303 kcal Electronic energy + Delta-G solvation = -18329.865068 eV Core-core repulsion = 15659.130980 eV Total energy + Delta-G solvation = -2670.734088 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.38479 -37.63742 -34.25298 -32.69502 -31.53270 -29.65964 -27.22981 -25.17652 -25.00063 -24.14221 -22.58855 -20.91377 -19.30244 -18.10597 -16.48276 -15.92282 -15.76864 -15.13783 -14.92710 -14.27583 -14.01201 -13.89578 -13.03252 -12.69306 -12.49154 -12.37793 -12.10765 -11.76341 -11.65955 -11.43088 -11.13629 -10.95551 -10.82997 -10.70482 -10.43006 -10.40585 -9.98239 -9.67002 -9.61937 -9.35127 -8.96533 -8.74544 -8.42383 -7.60439 -6.00886 -4.06156 3.30341 3.37120 3.42009 4.03555 4.41510 4.77016 4.81806 5.01032 5.08508 5.20537 5.26218 5.30122 5.51217 5.66419 5.74555 5.84635 5.92187 5.95958 6.11401 6.17019 6.25516 6.26531 6.34769 6.38410 6.50218 6.52721 6.64189 6.75975 6.85461 7.00869 7.15643 7.37721 7.49809 7.56714 7.83281 8.10926 8.33698 8.50893 9.00747 9.58928 11.05044 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.027299 B = 0.007420 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.447162 B = 3772.764531 C = 4355.465413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.110 4.110 3 C 0.188 3.812 4 H 0.005 0.995 5 C -0.505 4.505 6 H 0.060 0.940 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.473 5.473 14 C 0.043 3.957 15 C -0.135 4.135 16 C 0.015 3.985 17 C -0.106 4.106 18 C -0.153 4.153 19 C 0.062 3.938 20 O -0.381 6.381 21 C 0.094 3.906 22 H 0.030 0.970 23 H 0.037 0.963 24 H 0.049 0.951 25 H 0.039 0.961 26 H 0.093 0.907 27 H 0.260 0.740 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.557 8.631 -7.031 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C 0.081 3.919 4 H 0.022 0.978 5 C -0.544 4.544 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.196 5.196 14 C -0.086 4.086 15 C -0.136 4.136 16 C -0.114 4.114 17 C -0.144 4.144 18 C -0.191 4.191 19 C -0.015 4.015 20 O -0.300 6.300 21 C 0.018 3.982 22 H 0.049 0.951 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.058 0.942 26 H 0.111 0.889 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.151 8.037 -7.462 13.092 hybrid contribution 0.509 0.397 1.303 1.455 sum -6.642 8.434 -6.159 12.376 Atomic orbital electron populations 1.22080 0.99695 0.99257 1.00218 1.21515 0.91379 0.99493 1.02420 1.19749 0.95550 0.91634 0.84991 0.97785 1.21135 0.90974 1.37344 1.04931 0.92134 1.24925 0.98194 0.95288 0.95715 1.69885 1.34824 1.38882 1.09536 0.86552 0.85664 0.77414 0.78144 1.20815 1.21246 1.19822 1.68547 1.01726 1.12250 1.37109 1.23465 0.94673 0.90985 0.99512 1.22797 0.99199 0.95007 0.96585 1.23874 0.95137 0.93362 0.99035 1.21532 0.99051 0.93773 1.00077 1.22169 1.02309 0.98300 0.96324 1.22476 0.97047 0.87913 0.94091 1.87969 1.57994 1.13853 1.70144 1.22269 0.97490 0.87573 0.90870 0.95051 0.94364 0.93241 0.94214 0.88879 0.93002 0.90585 0.91710 0.91959 0.90600 0.91462 0.92215 0.90832 0.91477 0.93784 0.89506 0.87689 0.93749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 8.97 37.15 0.33 -2.79 16 2 C -0.11 -2.66 5.45 -26.73 -0.15 -2.81 16 3 C 0.19 4.70 1.38 -68.87 -0.09 4.60 16 4 H 0.00 0.12 7.62 -51.93 -0.40 -0.27 16 5 C -0.51 -13.93 8.08 -34.44 -0.28 -14.21 16 6 H 0.06 1.69 7.44 -52.48 -0.39 1.30 16 7 C 0.06 1.66 5.29 -17.82 -0.09 1.57 16 8 N -0.89 -25.45 11.29 55.43 0.63 -24.83 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.47 -10.10 5.82 -233.94 -1.36 -11.46 16 14 C 0.04 0.84 5.94 -2.97 -0.02 0.82 16 15 C -0.14 -2.14 0.88 -154.45 -0.14 -2.28 16 16 C 0.02 0.27 4.74 -3.00 -0.01 0.25 16 17 C -0.11 -1.44 5.21 -26.66 -0.14 -1.58 16 18 C -0.15 -1.84 6.09 -26.50 -0.16 -2.00 16 19 C 0.06 0.73 6.77 37.20 0.25 0.98 16 20 O -0.38 -5.77 10.78 -35.23 -0.38 -6.15 16 21 C 0.09 1.41 5.96 36.99 0.22 1.63 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.92 4.89 -51.92 -0.25 0.66 16 25 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.09 2.52 5.95 -51.92 -0.31 2.21 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 28 H 0.08 1.54 8.09 -51.93 -0.42 1.12 16 29 H 0.06 1.36 7.77 -51.93 -0.40 0.96 16 30 H 0.06 1.14 7.38 -51.93 -0.38 0.76 16 31 H 0.08 1.24 6.83 -51.93 -0.35 0.89 16 32 H 0.07 0.96 8.03 -51.93 -0.42 0.54 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.11 1.69 8.01 -51.93 -0.42 1.27 16 39 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 297.11 15.07 4.48 4.48 Total: -1.00 -28.59 297.11 -8.62 -37.21 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.68 Total: 0.05 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -0.28 Total: -15.81 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.73 Total: -36.28 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.38 Total: -6.15 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.59 -8.62 -37.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166255.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.557 kcal (2) G-P(sol) polarization free energy of solvation -28.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds