Wall clock time and date at job start Mon Mar 30 2020 17:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47327 * 2 1 4 4 H 1.08996 * 109.47002 * 54.99967 * 3 2 1 5 5 C 1.50704 * 109.47172 * 174.99300 * 3 2 1 6 6 H 1.08005 * 119.99705 * 119.99756 * 5 3 2 7 7 C 1.37872 * 120.00327 * 300.00616 * 5 3 2 8 8 N 1.31517 * 120.00008 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 120.00163 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47422 * 89.99472 * 9 7 5 11 11 H 1.48498 * 109.47103 * 209.99635 * 9 7 5 12 12 H 1.48500 * 109.46842 * 329.99438 * 9 7 5 13 13 N 1.46889 * 109.47194 * 294.99544 * 3 2 1 14 14 C 1.48060 * 111.00253 * 179.97438 * 13 3 2 15 15 C 1.53425 * 86.02204 * 222.75216 * 14 13 3 16 16 C 1.48060 * 111.00102 * 80.53875 * 13 3 2 17 17 C 1.52765 * 113.63618 * 137.97560 * 15 14 13 18 18 C 1.53364 * 108.74883 * 78.25973 * 17 15 14 19 19 C 1.53076 * 109.07053 * 54.75727 * 18 17 15 20 20 O 1.42865 * 109.70060 * 300.54358 * 19 18 17 21 21 C 1.43089 * 114.05569 * 62.92953 * 20 19 18 22 22 H 1.08994 * 109.47417 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47542 * 300.00464 * 1 2 3 24 24 H 1.09010 * 109.46638 * 59.99997 * 1 2 3 25 25 H 1.09002 * 109.47339 * 239.99765 * 2 1 3 26 26 H 1.09010 * 109.47125 * 119.99796 * 2 1 3 27 27 H 0.96999 * 120.00257 * 180.02562 * 8 7 5 28 28 H 1.08997 * 113.77932 * 108.47271 * 14 13 3 29 29 H 1.09002 * 113.78233 * 337.02941 * 14 13 3 30 30 H 1.09006 * 113.78206 * 22.97935 * 16 13 3 31 31 H 1.08994 * 113.78800 * 251.53654 * 16 13 3 32 32 H 1.08998 * 109.59274 * 318.48419 * 17 15 14 33 33 H 1.08994 * 109.71833 * 198.11427 * 17 15 14 34 34 H 1.08994 * 109.54192 * 294.88000 * 18 17 15 35 35 H 1.09000 * 109.53929 * 174.63322 * 18 17 15 36 36 H 1.08999 * 109.43599 * 60.61518 * 19 18 17 37 37 H 1.09001 * 109.43182 * 180.47428 * 19 18 17 38 38 H 1.08996 * 109.52575 * 181.44833 * 21 20 19 39 39 H 1.08996 * 109.57952 * 61.28306 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1240 6 1 4.1473 1.8888 -0.6522 7 6 4.1432 0.8783 1.2281 8 7 3.4060 0.3373 2.1734 9 14 6.0049 0.8812 1.3821 10 1 6.4416 2.1141 2.0852 11 1 6.4394 -0.3099 2.1553 12 1 6.6136 0.8415 0.0282 13 7 1.6515 2.0992 -1.2552 14 6 2.1286 3.5004 -1.2908 15 6 0.7489 3.8431 -1.8676 16 6 0.2445 2.5571 -1.2011 17 6 0.1398 5.1164 -1.2833 18 6 0.8008 6.3296 -1.9491 19 6 0.6609 6.2043 -3.4683 20 8 1.2894 5.0005 -3.9122 21 6 0.6954 3.8067 -3.3931 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 3.8290 -0.0605 2.9504 28 1 2.9502 3.6673 -1.9873 29 1 2.3114 3.9277 -0.3048 30 1 -0.1310 2.7050 -0.1885 31 1 -0.4318 1.9742 -1.8262 32 1 0.3183 5.1471 -0.2085 33 1 -0.9328 5.1330 -1.4762 34 1 1.8569 6.3618 -1.6818 35 1 0.3102 7.2427 -1.6120 36 1 -0.3958 6.1811 -3.7346 37 1 1.1364 7.0598 -3.9481 38 1 1.2453 2.9385 -3.7562 39 1 -0.3425 3.7433 -3.7198 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166255.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:47:23 Heat of formation + Delta-G solvation = -40.907119 kcal Electronic energy + Delta-G solvation = -18330.700193 eV Core-core repulsion = 15659.130980 eV Total energy + Delta-G solvation = -2671.569213 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.78860 -38.94906 -36.03850 -34.02794 -33.33436 -31.11194 -28.96121 -26.75765 -26.10209 -25.87458 -24.14109 -22.24555 -21.13854 -19.38604 -18.51419 -17.36519 -16.95574 -16.64533 -16.32848 -15.89953 -15.54333 -15.19610 -14.70038 -14.25023 -13.85894 -13.69789 -13.57362 -13.37744 -13.27604 -13.04896 -12.82807 -12.66261 -12.54454 -12.12716 -12.02478 -11.74345 -11.62964 -11.46849 -10.99092 -10.91177 -10.64659 -10.49626 -10.29433 -9.35436 -8.14144 -6.26680 1.36717 1.38133 1.48895 2.38790 2.95015 3.12765 3.32458 3.56157 3.81257 4.04035 4.07206 4.16409 4.34071 4.52833 4.57248 4.61070 4.64777 4.66305 4.72463 4.78073 4.82573 4.85681 4.94339 4.97902 5.07199 5.08370 5.18268 5.27039 5.31529 5.37196 5.43636 5.56874 5.60956 5.72704 6.14927 6.31236 6.35029 6.58134 6.87750 7.42147 8.90508 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.027299 B = 0.007420 C = 0.006427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.447162 B = 3772.764531 C = 4355.465413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C 0.196 3.804 4 H -0.029 1.029 5 C -0.525 4.525 6 H 0.048 0.952 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.955 3.045 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.272 1.272 13 N -0.486 5.486 14 C 0.038 3.962 15 C -0.114 4.114 16 C 0.018 3.982 17 C -0.105 4.105 18 C -0.150 4.150 19 C 0.056 3.944 20 O -0.402 6.402 21 C 0.098 3.902 22 H 0.050 0.950 23 H 0.034 0.966 24 H 0.068 0.932 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.262 0.738 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.853 9.705 -8.187 15.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.145 4.145 3 C 0.088 3.912 4 H -0.011 1.011 5 C -0.563 4.563 6 H 0.066 0.934 7 C -0.185 4.185 8 N -0.555 5.555 9 Si 0.780 3.220 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.197 1.197 13 N -0.209 5.209 14 C -0.091 4.091 15 C -0.114 4.114 16 C -0.111 4.111 17 C -0.143 4.143 18 C -0.188 4.188 19 C -0.020 4.020 20 O -0.321 6.321 21 C 0.022 3.978 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.123 0.877 38 H 0.106 0.894 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.455 9.120 -8.626 15.135 hybrid contribution 0.913 0.102 1.650 1.888 sum -7.542 9.222 -6.976 13.806 Atomic orbital electron populations 1.21941 0.96271 1.00807 1.00998 1.21362 0.94471 0.98400 1.00249 1.19510 0.94073 0.92058 0.85522 1.01107 1.21408 0.92626 1.37435 1.04851 0.93368 1.25663 1.02447 0.94944 0.95425 1.70006 1.36404 1.39279 1.09861 0.85605 0.80583 0.77690 0.78077 1.20152 1.20524 1.19690 1.68480 1.04461 1.13185 1.34757 1.23382 0.96901 0.90414 0.98407 1.22660 0.95698 0.95563 0.97527 1.23907 0.93274 0.94565 0.99361 1.21536 1.00505 0.92989 0.99294 1.22164 1.01238 0.98731 0.96636 1.22727 0.98427 0.87107 0.93743 1.87950 1.59022 1.14767 1.70361 1.22197 0.98765 0.87404 0.89468 0.93133 0.94637 0.91311 0.95265 0.92002 0.92907 0.91916 0.93948 0.92593 0.88463 0.92730 0.89622 0.92830 0.88668 0.91573 0.87698 0.89435 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.62 8.97 71.98 0.65 -4.98 16 2 C -0.11 -5.26 5.45 30.59 0.17 -5.09 16 3 C 0.20 10.13 1.38 44.17 0.06 10.19 16 4 H -0.03 -1.63 7.62 -2.39 -0.02 -1.65 16 5 C -0.52 -29.95 8.08 25.60 0.21 -29.75 16 6 H 0.05 2.80 7.44 -2.91 -0.02 2.77 16 7 C 0.01 0.80 5.29 84.65 0.45 1.25 16 8 N -0.92 -53.62 11.29 21.45 0.24 -53.37 16 9 Si 0.95 44.98 29.54 68.60 2.03 47.00 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 13 N -0.49 -21.04 5.82 -894.05 -5.20 -26.24 16 14 C 0.04 1.54 5.94 86.22 0.51 2.05 16 15 C -0.11 -3.47 0.88 -52.07 -0.05 -3.51 16 16 C 0.02 0.60 4.74 86.20 0.41 1.01 16 17 C -0.11 -2.62 5.21 30.64 0.16 -2.46 16 18 C -0.15 -3.23 6.09 30.74 0.19 -3.04 16 19 C 0.06 1.14 6.77 72.01 0.49 1.63 16 20 O -0.40 -11.30 10.78 -148.98 -1.61 -12.91 16 21 C 0.10 2.71 5.96 71.88 0.43 3.14 16 22 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.07 2.41 4.89 -2.38 -0.01 2.40 16 25 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.06 3.45 5.95 -2.38 -0.01 3.44 16 27 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 28 H 0.06 2.64 8.09 -2.39 -0.02 2.62 16 29 H 0.04 1.87 7.77 -2.39 -0.02 1.86 16 30 H 0.06 2.01 7.38 -2.38 -0.02 1.99 16 31 H 0.10 2.91 6.83 -2.39 -0.02 2.89 16 32 H 0.05 1.50 8.03 -2.39 -0.02 1.48 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 2.72 8.01 -2.39 -0.02 2.70 16 39 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -63.34 297.11 0.13 -63.21 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 1.00 Total: 11.85 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 3.67 Total: -29.54 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -4.96 Total: -79.62 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -1.61 Total: -12.91 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -63.34 0.13 -63.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166255.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.301 kcal (2) G-P(sol) polarization free energy of solvation -63.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds