Wall clock time and date at job start Mon Mar 30 2020 17:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.46694 * 2 1 4 4 H 1.08997 * 109.47725 * 54.19348 * 3 2 1 5 5 C 1.50710 * 109.47054 * 174.19844 * 3 2 1 6 6 H 1.07994 * 120.00279 * 119.99577 * 5 3 2 7 7 C 1.37875 * 119.99364 * 299.99697 * 5 3 2 8 8 N 1.31518 * 120.00611 * 359.97438 * 7 5 3 9 9 Si 1.86806 * 119.99641 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47138 * 90.00272 * 9 7 5 11 11 H 1.48507 * 109.46962 * 209.99812 * 9 7 5 12 12 H 1.48493 * 109.46976 * 329.99638 * 9 7 5 13 13 N 1.46903 * 109.47056 * 294.19170 * 3 2 1 14 14 C 1.48044 * 110.99827 * 181.84515 * 13 3 2 15 15 C 1.53508 * 86.04557 * 222.70092 * 14 13 3 16 16 C 1.48039 * 110.99734 * 82.40774 * 13 3 2 17 17 C 1.52734 * 113.51657 * 137.82957 * 15 14 13 18 18 C 1.53326 * 109.01939 * 77.63198 * 17 15 14 19 19 C 1.53394 * 108.83937 * 54.73043 * 18 17 15 20 20 C 1.53048 * 109.47058 * 301.39265 * 19 18 17 21 21 O 1.42486 * 113.66805 * 268.98041 * 15 14 13 22 22 H 1.08999 * 109.46640 * 187.07018 * 1 2 3 23 23 H 1.08998 * 109.46945 * 307.06976 * 1 2 3 24 24 H 1.08997 * 109.47258 * 67.07153 * 1 2 3 25 25 H 1.08990 * 109.46854 * 239.99663 * 2 1 3 26 26 H 1.09002 * 109.46971 * 119.99641 * 2 1 3 27 27 H 0.96995 * 120.00194 * 180.02562 * 8 7 5 28 28 H 1.08998 * 113.78045 * 108.42274 * 14 13 3 29 29 H 1.09001 * 113.88452 * 336.99791 * 14 13 3 30 30 H 1.09001 * 113.78013 * 23.01906 * 16 13 3 31 31 H 1.09003 * 113.78035 * 251.58846 * 16 13 3 32 32 H 1.09001 * 109.55904 * 197.52054 * 17 15 14 33 33 H 1.09006 * 109.56198 * 317.73908 * 17 15 14 34 34 H 1.08996 * 109.55771 * 174.67919 * 18 17 15 35 35 H 1.09007 * 109.55304 * 294.99097 * 18 17 15 36 36 H 1.08998 * 109.45618 * 181.39084 * 19 18 17 37 37 H 1.09002 * 109.45541 * 61.38705 * 19 18 17 38 38 H 1.09007 * 109.47277 * 299.38404 * 20 19 18 39 39 H 1.08997 * 109.48081 * 179.36087 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5942 1.9855 0.8334 5 6 3.5402 1.4450 0.1436 6 1 4.1556 1.8859 -0.6265 7 6 4.1268 0.8843 1.2583 8 7 3.3773 0.3478 2.1964 9 14 5.9863 0.8880 1.4367 10 1 6.4136 2.1243 2.1399 11 1 6.4107 -0.2994 2.2212 12 1 6.6127 0.8420 0.0912 13 7 1.6680 2.0933 -1.2634 14 6 2.1839 3.4799 -1.3178 15 6 0.8133 3.8539 -1.8993 16 6 0.2746 2.5908 -1.2137 17 6 0.2419 5.1498 -1.3274 18 6 0.9438 6.3408 -1.9904 19 6 0.8100 6.2099 -3.5129 20 6 1.4311 4.8871 -3.9676 21 8 0.7616 3.7999 -3.3222 22 1 -0.3632 -1.0199 0.1265 23 1 -0.3633 0.6195 0.8200 24 1 -0.3633 0.4003 -0.9464 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.7900 -0.0463 2.9807 28 1 3.0094 3.6145 -2.0168 29 1 2.3800 3.9166 -0.3386 30 1 -0.0949 2.7630 -0.2028 31 1 -0.4188 2.0181 -1.8297 32 1 -0.8281 5.1975 -1.5303 33 1 0.4109 5.1795 -0.2510 34 1 0.4784 7.2691 -1.6592 35 1 1.9987 6.3415 -1.7160 36 1 1.3272 7.0392 -3.9955 37 1 -0.2446 6.2297 -3.7877 38 1 2.4882 4.8717 -3.7022 39 1 1.3260 4.7886 -5.0481 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166313.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:47:31 Heat of formation + Delta-G solvation = -21.062037 kcal Electronic energy + Delta-G solvation = -18358.439930 eV Core-core repulsion = 15687.731264 eV Total energy + Delta-G solvation = -2670.708666 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.32192 -37.19817 -33.78251 -33.48917 -31.53192 -29.89564 -27.52737 -25.40143 -24.71815 -23.77246 -22.46503 -20.69426 -19.29578 -18.62543 -16.52002 -15.89219 -15.75740 -15.02905 -14.38989 -14.36740 -13.88970 -13.79092 -13.19428 -12.76107 -12.63645 -12.34166 -12.12410 -11.70333 -11.61658 -11.37522 -11.14701 -10.92601 -10.88041 -10.74424 -10.59019 -10.49866 -10.04157 -9.80768 -9.58904 -9.30486 -8.85534 -8.73418 -8.41665 -7.56944 -6.01393 -4.06904 3.29039 3.36101 3.40642 3.95728 4.40586 4.79077 4.86217 4.94397 4.97158 5.18870 5.21624 5.29753 5.55036 5.60433 5.77851 5.87807 5.93619 6.01260 6.09376 6.13714 6.18867 6.25114 6.30171 6.39833 6.40090 6.44688 6.57528 6.63065 6.83920 7.04630 7.16436 7.50988 7.57454 7.66564 7.82686 8.11529 8.34124 8.50843 8.99723 9.58026 11.04440 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.027059 B = 0.007544 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.545427 B = 3710.890971 C = 4303.052157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C 0.185 3.815 4 H 0.006 0.994 5 C -0.506 4.506 6 H 0.060 0.940 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.463 5.463 14 C 0.007 3.993 15 C 0.079 3.921 16 C 0.020 3.980 17 C -0.137 4.137 18 C -0.120 4.120 19 C -0.154 4.154 20 C 0.059 3.941 21 O -0.347 6.347 22 H 0.031 0.969 23 H 0.038 0.962 24 H 0.045 0.955 25 H 0.040 0.960 26 H 0.093 0.907 27 H 0.260 0.740 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.719 9.659 -7.077 13.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C 0.078 3.922 4 H 0.023 0.977 5 C -0.545 4.545 6 H 0.078 0.922 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.187 5.187 14 C -0.122 4.122 15 C 0.039 3.961 16 C -0.109 4.109 17 C -0.175 4.175 18 C -0.158 4.158 19 C -0.192 4.192 20 C -0.018 4.018 21 O -0.266 6.266 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.585 8.905 -7.478 12.900 hybrid contribution 0.969 0.676 1.078 1.599 sum -4.616 9.581 -6.400 12.412 Atomic orbital electron populations 1.22004 0.99582 0.99257 1.00033 1.21509 0.91474 0.99379 1.02421 1.19813 0.95667 0.91860 0.84840 0.97670 1.21133 0.91037 1.37711 1.04608 0.92215 1.24925 0.98133 0.95266 0.95762 1.69884 1.34739 1.38987 1.09381 0.86558 0.85666 0.77448 0.78121 1.20815 1.21196 1.19868 1.68602 1.01336 1.12335 1.36391 1.24077 0.95970 0.92162 1.00028 1.22908 0.97322 0.94233 0.81669 1.24019 0.95675 0.92874 0.98370 1.22053 1.00283 0.94686 1.00478 1.21611 1.01228 0.98011 0.94937 1.22194 1.01881 0.98428 0.96684 1.22515 0.96098 0.86035 0.97104 1.87921 1.75876 1.45703 1.17071 0.94963 0.94285 0.93578 0.94157 0.88836 0.92966 0.90760 0.90983 0.91050 0.89806 0.91470 0.90729 0.91912 0.91580 0.91365 0.91434 0.93067 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.80 37.16 0.33 -2.79 16 2 C -0.11 -2.70 5.45 -26.73 -0.15 -2.84 16 3 C 0.19 4.69 1.40 -68.86 -0.10 4.59 16 4 H 0.01 0.16 7.56 -51.93 -0.39 -0.24 16 5 C -0.51 -13.98 8.03 -34.44 -0.28 -14.26 16 6 H 0.06 1.67 7.36 -52.49 -0.39 1.28 16 7 C 0.06 1.67 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -25.35 11.29 55.43 0.63 -24.72 16 9 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.46 -10.35 5.97 -233.79 -1.40 -11.75 16 14 C 0.01 0.14 5.88 -2.94 -0.02 0.12 16 15 C 0.08 1.35 1.11 -90.31 -0.10 1.25 16 16 C 0.02 0.37 5.14 -2.95 -0.02 0.35 16 17 C -0.14 -1.91 5.25 -26.70 -0.14 -2.05 16 18 C -0.12 -1.44 5.99 -26.36 -0.16 -1.59 16 19 C -0.15 -1.73 6.08 -26.50 -0.16 -1.89 16 20 C 0.06 0.79 6.74 37.18 0.25 1.04 16 21 O -0.35 -5.98 10.53 -35.23 -0.37 -6.35 16 22 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.04 0.79 8.10 -51.93 -0.42 0.36 16 24 H 0.05 0.89 5.60 -51.93 -0.29 0.60 16 25 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.09 2.55 5.94 -51.93 -0.31 2.24 16 27 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 28 H 0.07 1.48 7.35 -51.93 -0.38 1.10 16 29 H 0.07 1.48 7.74 -51.93 -0.40 1.08 16 30 H 0.07 1.32 7.42 -51.93 -0.39 0.94 16 31 H 0.08 1.55 6.98 -51.93 -0.36 1.19 16 32 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.82 8.13 -51.92 -0.42 0.39 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.05 0.70 7.29 -51.92 -0.38 0.32 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 296.62 15.07 4.47 4.47 Total: -1.00 -29.09 296.62 -8.96 -38.05 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.64 Total: 0.38 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -0.63 Total: -16.49 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: -0.77 Total: -36.47 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.37 Total: -6.35 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.09 -8.96 -38.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166313.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.991 kcal (2) G-P(sol) polarization free energy of solvation -29.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds