Wall clock time and date at job start Mon Mar 30 2020 17:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47306 * 2 1 4 4 H 1.09001 * 109.47407 * 177.68439 * 3 2 1 5 5 C 1.50695 * 109.47373 * 297.68782 * 3 2 1 6 6 H 1.07996 * 119.99788 * 119.99894 * 5 3 2 7 7 C 1.37869 * 120.00163 * 299.99761 * 5 3 2 8 8 N 1.31512 * 120.00037 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00323 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46799 * 60.00125 * 9 7 5 11 11 H 1.48496 * 109.47243 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47024 * 300.00663 * 9 7 5 13 13 N 1.46903 * 109.46876 * 57.69100 * 3 2 1 14 14 C 1.46823 * 111.00378 * 59.17134 * 13 3 2 15 15 C 1.53018 * 109.79876 * 187.62177 * 14 13 3 16 16 C 1.53314 * 109.17454 * 298.97455 * 15 14 13 17 17 C 1.52648 * 108.89066 * 55.28726 * 16 15 14 18 18 C 1.53474 * 113.75248 * 174.53241 * 17 16 15 19 19 C 1.54123 * 85.64636 * 268.07000 * 18 17 16 20 20 O 1.43589 * 113.69828 * 78.10844 * 17 16 15 21 21 C 1.47037 * 110.99908 * 183.31500 * 13 3 2 22 22 H 1.08998 * 109.46824 * 184.80154 * 1 2 3 23 23 H 1.09001 * 109.47070 * 304.79718 * 1 2 3 24 24 H 1.09002 * 109.46706 * 64.79824 * 1 2 3 25 25 H 1.09000 * 109.47004 * 240.00089 * 2 1 3 26 26 H 1.09002 * 109.46954 * 120.00588 * 2 1 3 27 27 H 0.97006 * 120.00329 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.41682 * 307.72392 * 14 13 3 29 29 H 1.09005 * 109.41607 * 67.51525 * 14 13 3 30 30 H 1.08995 * 109.52386 * 58.88112 * 15 14 13 31 31 H 1.09005 * 109.52079 * 179.00994 * 15 14 13 32 32 H 1.09000 * 109.56770 * 295.46497 * 16 15 14 33 33 H 1.09002 * 109.56825 * 175.10868 * 16 15 14 34 34 H 1.08999 * 113.84561 * 22.25431 * 18 17 16 35 35 H 1.09006 * 113.84284 * 153.89403 * 18 17 16 36 36 H 1.09002 * 113.84499 * 91.98485 * 19 18 17 37 37 H 1.08992 * 113.85603 * 223.51886 * 19 18 17 38 38 H 1.08998 * 109.50128 * 56.80814 * 21 13 3 39 39 H 1.08994 * 109.53166 * 296.71286 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1293 1.4428 0.0415 5 6 1.5851 2.1362 -1.2581 6 1 0.9612 3.0153 -1.1944 7 6 1.9655 1.6485 -2.4903 8 7 2.7249 0.5776 -2.5678 9 14 1.4010 2.5080 -4.0498 10 1 1.8955 3.9082 -4.0499 11 1 1.9412 1.7916 -5.2331 12 1 -0.0829 2.5072 -4.1060 13 7 1.5053 2.1509 1.1706 14 6 1.9129 1.4903 2.4169 15 6 1.1912 2.1323 3.6037 16 6 1.5770 3.6138 3.6862 17 6 1.2703 4.2796 2.3472 18 6 1.4908 5.7984 2.3472 19 6 0.0028 5.8963 2.7365 20 8 -0.1209 4.5805 2.1576 21 6 1.9112 3.5641 1.1620 22 1 -0.3633 -1.0241 0.0860 23 1 -0.3633 0.5865 0.8439 24 1 -0.3633 0.4376 -0.9299 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.9922 0.2342 -3.4347 28 1 1.6570 0.4320 2.3666 29 1 2.9900 1.5958 2.5475 30 1 0.1137 2.0437 3.4661 31 1 1.4836 1.6272 4.5244 32 1 2.6416 3.7024 3.9025 33 1 1.0010 4.0977 4.4749 34 1 2.1732 6.1446 3.1235 35 1 1.7171 6.2108 1.3638 36 1 -0.1704 5.9225 3.8123 37 1 -0.5438 6.6702 2.1977 38 1 1.5825 4.0314 0.2337 39 1 2.9962 3.6321 1.2394 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172534.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:47:55 Heat of formation + Delta-G solvation = -12.534003 kcal Electronic energy + Delta-G solvation = -18603.842181 eV Core-core repulsion = 15933.503319 eV Total energy + Delta-G solvation = -2670.338862 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.59810 -37.41367 -34.14251 -31.71896 -30.71306 -29.86614 -28.11626 -26.47086 -24.14738 -23.54413 -22.14667 -20.95630 -18.74486 -18.68996 -16.10637 -15.83338 -15.63406 -15.34546 -15.05519 -14.29304 -13.83542 -13.24526 -13.07479 -12.77331 -12.51331 -12.31065 -11.88425 -11.76517 -11.66128 -11.12741 -10.90781 -10.84570 -10.66642 -10.52601 -10.31657 -10.24849 -9.98519 -9.80681 -9.51435 -9.33102 -9.06832 -8.70183 -8.34384 -7.04088 -5.95695 -3.98971 3.35165 3.39482 3.43299 3.97001 4.44202 4.48791 4.95540 5.03399 5.27041 5.29792 5.35976 5.39269 5.50163 5.67147 5.76321 5.85963 5.97969 6.09639 6.13544 6.21020 6.30390 6.43255 6.49577 6.61817 6.65570 6.70322 6.76276 6.84581 6.93510 7.22291 7.40229 7.47394 7.72747 7.83402 7.89503 8.24824 8.40483 8.67936 9.06910 9.64936 11.10662 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.025075 B = 0.008858 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.397253 B = 3160.258670 C = 3832.224208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 C 0.217 3.783 4 H -0.004 1.004 5 C -0.496 4.496 6 H 0.063 0.937 7 C 0.060 3.940 8 N -0.894 5.894 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.522 5.522 14 C 0.049 3.951 15 C -0.111 4.111 16 C -0.118 4.118 17 C 0.100 3.900 18 C -0.181 4.181 19 C 0.026 3.974 20 O -0.352 6.352 21 C 0.076 3.924 22 H 0.013 0.987 23 H 0.048 0.952 24 H 0.053 0.947 25 H 0.092 0.908 26 H 0.013 0.987 27 H 0.260 0.740 28 H 0.075 0.925 29 H 0.017 0.983 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.282 6.541 10.923 12.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.149 4.149 3 C 0.111 3.889 4 H 0.013 0.987 5 C -0.534 4.534 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.202 1.202 13 N -0.246 5.246 14 C -0.080 4.080 15 C -0.148 4.148 16 C -0.156 4.156 17 C 0.060 3.940 18 C -0.219 4.219 19 C -0.051 4.051 20 O -0.271 6.271 21 C -0.052 4.052 22 H 0.032 0.968 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.110 0.890 26 H 0.032 0.968 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.035 0.965 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.113 0.887 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.916 6.235 10.625 12.468 hybrid contribution 0.780 0.576 -0.756 1.230 sum -1.136 6.811 9.869 12.045 Atomic orbital electron populations 1.21461 0.97235 0.97179 1.01989 1.21573 0.95214 0.98101 1.00008 1.19250 0.92222 0.90888 0.86501 0.98694 1.21066 1.30772 1.11916 0.89673 0.91938 1.24893 0.95236 0.95096 0.98891 1.69870 1.36393 1.22540 1.24535 0.86644 0.79140 0.79506 0.82630 1.20450 1.21463 1.20212 1.62050 1.60055 1.00527 1.02012 1.22090 0.95858 0.99277 0.90763 1.21534 1.01815 0.94058 0.97441 1.21696 1.01032 0.97169 0.95667 1.22461 0.82500 0.93240 0.95821 1.24680 0.97357 0.96854 1.03048 1.23765 0.95386 0.87754 0.98212 1.89826 1.27656 1.30096 1.79533 1.21936 0.95735 0.90781 0.96783 0.96750 0.93292 0.92766 0.89002 0.96842 0.93029 0.90648 0.96510 0.90994 0.92427 0.91318 0.91994 0.91453 0.88739 0.91065 0.89760 0.88808 0.94959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.77 9.50 37.16 0.35 -2.42 16 2 C -0.11 -2.69 5.06 -26.73 -0.14 -2.83 16 3 C 0.22 5.47 1.76 -68.87 -0.12 5.34 16 4 H 0.00 -0.12 8.14 -51.93 -0.42 -0.55 16 5 C -0.50 -13.46 6.83 -34.45 -0.24 -13.70 16 6 H 0.06 1.73 6.45 -52.49 -0.34 1.39 16 7 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 8 N -0.89 -25.41 11.30 55.43 0.63 -24.79 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.52 -11.38 3.58 -228.25 -0.82 -12.19 16 14 C 0.05 0.91 5.18 -3.86 -0.02 0.89 16 15 C -0.11 -1.73 6.12 -26.56 -0.16 -1.89 16 16 C -0.12 -1.70 5.38 -26.75 -0.14 -1.85 16 17 C 0.10 1.66 1.21 -91.01 -0.11 1.55 16 18 C -0.18 -2.42 7.52 -25.90 -0.19 -2.61 16 19 C 0.03 0.34 8.85 37.51 0.33 0.68 16 20 O -0.35 -6.42 12.11 -35.23 -0.43 -6.85 16 21 C 0.08 1.53 4.65 -3.97 -0.02 1.51 16 22 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 23 H 0.05 1.10 7.39 -51.93 -0.38 0.72 16 24 H 0.05 1.34 7.46 -51.93 -0.39 0.95 16 25 H 0.09 2.48 6.01 -51.93 -0.31 2.17 16 26 H 0.01 0.29 6.35 -51.93 -0.33 -0.04 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 28 H 0.08 1.44 5.94 -51.93 -0.31 1.13 16 29 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.79 7.53 -51.93 -0.39 0.40 16 34 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 35 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 36 H 0.07 0.79 7.81 -51.93 -0.41 0.39 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 2.09 6.17 -51.93 -0.32 1.77 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 295.94 15.07 4.46 4.46 Total: -1.00 -29.00 295.94 -8.26 -37.26 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.53 Total: -0.60 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -0.55 Total: -13.79 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.19 Total: -36.98 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.43 Total: -6.85 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.00 -8.26 -37.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172534.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.729 kcal (2) G-P(sol) polarization free energy of solvation -29.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds