Wall clock time and date at job start Mon Mar 30 2020 17:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47103 * 2 1 4 4 H 1.09000 * 109.47195 * 56.50038 * 3 2 1 5 5 C 1.50697 * 109.47324 * 296.49573 * 3 2 1 6 6 H 1.08002 * 119.99960 * 274.52670 * 5 3 2 7 7 C 1.37875 * 120.00058 * 94.52699 * 5 3 2 8 8 N 1.31512 * 119.99621 * 6.80532 * 7 5 3 9 9 Si 1.86801 * 120.00013 * 186.80538 * 7 5 3 10 10 H 1.48498 * 109.46862 * 179.97438 * 9 7 5 11 11 H 1.48501 * 109.46941 * 60.00212 * 9 7 5 12 12 H 1.48492 * 109.47310 * 300.00238 * 9 7 5 13 13 N 1.46903 * 109.46890 * 176.49671 * 3 2 1 14 14 C 1.46842 * 111.00197 * 58.43643 * 13 3 2 15 15 C 1.53037 * 109.52168 * 174.15882 * 14 13 3 16 16 C 1.53118 * 109.27802 * 59.18310 * 15 14 13 17 17 C 1.53118 * 109.16099 * 302.33985 * 16 15 14 18 18 C 1.46850 * 110.99889 * 294.22607 * 13 3 2 19 19 H 1.08998 * 109.46051 * 65.82499 * 18 13 3 20 20 C 1.50699 * 109.46588 * 305.85874 * 18 13 3 21 21 C 1.50701 * 120.00426 * 165.00161 * 20 18 13 22 22 O 1.20766 * 119.99831 * 344.99763 * 20 18 13 23 23 H 1.08994 * 109.47254 * 185.81326 * 1 2 3 24 24 H 1.08999 * 109.47060 * 305.81651 * 1 2 3 25 25 H 1.09011 * 109.47174 * 65.81513 * 1 2 3 26 26 H 1.09001 * 109.47083 * 240.00692 * 2 1 3 27 27 H 1.09001 * 109.47288 * 120.00176 * 2 1 3 28 28 H 0.96998 * 120.00651 * 5.34115 * 8 7 5 29 29 H 1.08996 * 109.46163 * 294.17727 * 14 13 3 30 30 H 1.09003 * 109.45977 * 54.16184 * 14 13 3 31 31 H 1.09007 * 109.50534 * 179.12260 * 15 14 13 32 32 H 1.09000 * 109.50701 * 299.24073 * 15 14 13 33 33 H 1.09003 * 109.52648 * 62.25228 * 16 15 14 34 34 H 1.09007 * 109.52094 * 182.44085 * 16 15 14 35 35 H 1.09003 * 109.50294 * 177.58978 * 17 16 15 36 36 H 1.08989 * 109.50799 * 297.67826 * 17 16 15 37 37 H 1.09001 * 109.46464 * 359.97438 * 21 20 18 38 38 H 1.08999 * 109.47190 * 119.99871 * 21 20 18 39 39 H 1.09000 * 109.47022 * 239.99997 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6263 1.9742 0.8570 5 6 1.6098 2.1275 -1.2715 6 1 2.2089 2.0328 -2.1652 7 6 0.4515 2.8750 -1.2941 8 7 -0.2065 3.1017 -0.1782 9 14 -0.1831 3.5657 -2.9095 10 1 -1.4351 4.3258 -2.6650 11 1 -0.4575 2.4505 -3.8509 12 1 0.8385 4.4693 -3.4969 13 7 3.5065 1.4433 0.0846 14 6 4.0988 0.7024 -1.0363 15 6 5.6218 0.8467 -0.9969 16 6 6.1470 0.3012 0.3340 17 6 5.4785 1.0570 1.4857 18 6 3.9595 0.9067 1.3743 19 1 3.6929 -0.1480 1.4425 20 6 3.2964 1.6654 2.4948 21 6 3.3175 1.1113 3.8961 22 8 2.7480 2.7176 2.2698 23 1 -0.3633 -1.0223 0.1041 24 1 -0.3633 0.6014 0.8333 25 1 -0.3634 0.4211 -0.9376 26 1 1.8933 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8900 28 1 0.1622 2.8100 0.6702 29 1 3.8316 -0.3513 -0.9567 30 1 3.7205 1.1032 -1.9768 31 1 6.0622 0.2838 -1.8200 32 1 5.8903 1.8990 -1.0902 33 1 5.9128 -0.7606 0.4104 34 1 7.2268 0.4416 0.3845 35 1 5.8162 0.6443 2.4364 36 1 5.7451 2.1124 1.4319 37 1 3.8528 0.1618 3.9032 38 1 3.8195 1.8167 4.5583 39 1 2.2952 0.9543 4.2402 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173931.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:09 Heat of formation + Delta-G solvation = -61.117671 kcal Electronic energy + Delta-G solvation = -18812.426518 eV Core-core repulsion = 16139.980909 eV Total energy + Delta-G solvation = -2672.445608 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.35233 -38.94923 -36.74328 -33.74733 -32.75219 -32.25953 -30.31552 -27.93692 -25.66760 -24.73851 -24.03188 -22.15364 -20.95270 -19.94373 -18.42029 -17.23198 -16.81933 -16.32195 -15.78192 -15.61099 -15.43793 -15.09018 -14.84074 -14.55166 -14.37020 -14.04310 -13.74350 -13.32994 -13.05946 -12.89723 -12.65420 -12.52377 -12.46084 -12.34158 -12.02905 -11.89357 -11.79056 -11.61900 -11.44588 -11.13178 -10.58469 -10.33413 -10.02256 -8.76403 -8.45317 -6.12789 1.10623 1.50855 1.58900 1.77048 2.60018 2.99202 3.26241 3.51715 3.91247 4.05289 4.10887 4.20580 4.31350 4.34173 4.36990 4.42974 4.58013 4.62180 4.64793 4.69990 4.87889 4.88956 4.94578 4.99576 5.09374 5.10792 5.14039 5.20174 5.27785 5.31899 5.47586 5.54237 5.59981 5.99109 6.27574 6.61513 6.65065 6.73967 6.95446 7.63482 8.90977 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.023561 B = 0.009781 C = 0.008354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.125490 B = 2861.870713 C = 3350.913794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.136 4.136 3 C 0.180 3.820 4 H 0.046 0.954 5 C -0.580 4.580 6 H 0.040 0.960 7 C -0.022 4.022 8 N -0.933 5.933 9 Si 1.103 2.897 10 H -0.287 1.287 11 H -0.270 1.270 12 H -0.280 1.280 13 N -0.533 5.533 14 C 0.063 3.937 15 C -0.115 4.115 16 C -0.108 4.108 17 C -0.097 4.097 18 C 0.025 3.975 19 H 0.069 0.931 20 C 0.339 3.661 21 C -0.191 4.191 22 O -0.483 6.483 23 H 0.055 0.945 24 H 0.024 0.976 25 H 0.038 0.962 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.257 0.743 29 H 0.025 0.975 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.832 -9.582 4.765 15.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.176 4.176 3 C 0.073 3.927 4 H 0.063 0.937 5 C -0.619 4.619 6 H 0.059 0.941 7 C -0.221 4.221 8 N -0.572 5.572 9 Si 0.927 3.073 10 H -0.213 1.213 11 H -0.196 1.196 12 H -0.206 1.206 13 N -0.257 5.257 14 C -0.065 4.065 15 C -0.153 4.153 16 C -0.146 4.146 17 C -0.135 4.135 18 C -0.084 4.084 19 H 0.086 0.914 20 C 0.216 3.784 21 C -0.248 4.248 22 O -0.358 6.358 23 H 0.074 0.926 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.068 0.932 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.121 0.879 36 H 0.070 0.930 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.471 -7.695 3.941 13.579 hybrid contribution 0.508 -1.295 0.606 1.517 sum 10.979 -8.990 4.547 14.901 Atomic orbital electron populations 1.21382 0.96254 0.99098 1.00680 1.22169 0.96476 1.00297 0.98609 1.19740 0.83565 0.91403 0.98004 0.93677 1.22072 1.10171 1.33229 0.96389 0.94142 1.26871 0.95057 0.94639 1.05531 1.70871 1.40519 1.47139 0.98661 0.83129 0.75774 0.76467 0.71977 1.21309 1.19571 1.20579 1.62181 1.09574 1.53399 1.00563 1.21974 0.95315 0.94754 0.94455 1.21630 0.93542 1.01182 0.98935 1.21531 1.00555 0.99557 0.92918 1.21500 0.90040 1.01138 1.00845 1.22350 0.98057 0.97384 0.90656 0.91376 1.25426 0.74594 0.84921 0.93476 1.22258 1.05195 1.04568 0.92818 1.90463 1.35193 1.23844 1.86289 0.92597 0.95712 0.94253 0.93486 0.94096 0.93183 0.95663 0.93001 0.90071 0.93018 0.90962 0.89278 0.87875 0.92970 0.86975 0.87630 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.84 71.98 0.64 -4.74 16 2 C -0.14 -6.10 4.68 30.59 0.14 -5.96 16 3 C 0.18 9.25 1.51 44.17 0.07 9.32 16 4 H 0.05 2.65 3.19 -2.39 -0.01 2.64 16 5 C -0.58 -33.42 7.51 25.60 0.19 -33.23 16 6 H 0.04 2.34 6.05 -2.91 -0.02 2.33 16 7 C -0.02 -1.29 4.31 84.65 0.36 -0.93 16 8 N -0.93 -59.05 12.97 21.45 0.28 -58.77 16 9 Si 1.10 52.94 29.91 68.60 2.05 54.99 16 10 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 11 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 N -0.53 -23.48 4.24 -854.76 -3.62 -27.11 16 14 C 0.06 2.41 4.66 86.33 0.40 2.81 16 15 C -0.12 -3.33 6.09 30.65 0.19 -3.15 16 16 C -0.11 -2.43 6.00 30.67 0.18 -2.25 16 17 C -0.10 -2.50 5.35 30.65 0.16 -2.34 16 18 C 0.02 0.85 1.68 44.19 0.07 0.93 16 19 H 0.07 2.14 6.67 -2.39 -0.02 2.12 16 20 C 0.34 12.37 5.81 29.10 0.17 12.54 16 21 C -0.19 -4.46 10.32 71.24 0.74 -3.72 16 22 O -0.48 -23.83 14.97 -1.47 -0.02 -23.86 16 23 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.02 1.21 7.58 -2.39 -0.02 1.19 16 25 H 0.04 2.01 6.85 -2.38 -0.02 1.99 16 26 H 0.05 2.07 6.71 -2.39 -0.02 2.06 16 27 H 0.04 1.62 6.51 -2.39 -0.02 1.61 16 28 H 0.26 16.81 5.97 -92.71 -0.55 16.25 16 29 H 0.03 0.93 6.69 -2.39 -0.02 0.91 16 30 H 0.05 2.29 6.04 -2.39 -0.01 2.28 16 31 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.11 1.77 8.00 -2.39 -0.02 1.75 16 38 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -74.01 293.72 3.24 -70.77 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 1.24 Total: 14.69 kcal Atomic # 6 Polarization: -34.04 SS G_CDS: 3.32 Total: -30.72 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -3.35 Total: -85.88 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.02 Total: -23.86 kcal Atomic # 14 Polarization: 52.94 SS G_CDS: 2.05 Total: 54.99 kcal Total: -74.01 3.24 -70.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173931.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.652 kcal (2) G-P(sol) polarization free energy of solvation -74.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds