Wall clock time and date at job start Mon Mar 30 2020 17:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47479 * 2 1 4 4 H 1.09005 * 109.46780 * 303.75523 * 3 2 1 5 5 C 1.50694 * 109.47438 * 183.75585 * 3 2 1 6 6 H 1.07992 * 120.00442 * 275.13928 * 5 3 2 7 7 C 1.37882 * 119.99884 * 95.13381 * 5 3 2 8 8 N 1.31510 * 120.00184 * 184.81690 * 7 5 3 9 9 Si 1.86801 * 120.00124 * 4.82190 * 7 5 3 10 10 H 1.48504 * 109.47132 * 84.85446 * 9 7 5 11 11 H 1.48496 * 109.47335 * 204.85582 * 9 7 5 12 12 H 1.48505 * 109.46852 * 324.85676 * 9 7 5 13 13 N 1.46899 * 109.47219 * 63.75247 * 3 2 1 14 14 C 1.46858 * 110.99045 * 65.74838 * 13 3 2 15 15 C 1.53035 * 109.52049 * 185.79850 * 14 13 3 16 16 C 1.53121 * 109.31594 * 300.88851 * 15 14 13 17 17 C 1.53117 * 109.16053 * 57.62815 * 16 15 14 18 18 C 1.46840 * 111.00248 * 190.00077 * 13 3 2 19 19 H 1.09000 * 109.46648 * 294.17930 * 18 13 3 20 20 C 1.50702 * 109.46208 * 54.14789 * 18 13 3 21 21 C 1.50704 * 120.00061 * 200.05079 * 20 18 13 22 22 O 1.20758 * 119.99688 * 20.05499 * 20 18 13 23 23 H 1.09003 * 109.47162 * 299.99858 * 1 2 3 24 24 H 1.09000 * 109.47353 * 59.99985 * 1 2 3 25 25 H 1.08997 * 109.47591 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47162 * 240.00141 * 2 1 3 27 27 H 1.09000 * 109.47353 * 120.00015 * 2 1 3 28 28 H 0.96995 * 120.00263 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.42118 * 65.81100 * 14 13 3 30 30 H 1.08994 * 109.49781 * 305.84000 * 14 13 3 31 31 H 1.08994 * 109.50527 * 180.92582 * 15 14 13 32 32 H 1.09004 * 109.50018 * 60.84500 * 15 14 13 33 33 H 1.08997 * 109.52810 * 177.54213 * 16 15 14 34 34 H 1.09009 * 109.51785 * 297.73023 * 16 15 14 35 35 H 1.09002 * 109.49868 * 62.29394 * 17 16 15 36 36 H 1.08999 * 109.50580 * 182.40775 * 17 16 15 37 37 H 1.08996 * 109.46605 * 60.00343 * 21 20 18 38 38 H 1.08996 * 109.46703 * 179.97438 * 21 20 18 39 39 H 1.09001 * 109.47105 * 300.00146 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6228 1.9753 -0.8545 5 6 3.5441 1.4435 -0.0931 6 1 4.1406 1.3397 0.8012 7 6 4.1588 1.5767 -1.3201 8 7 5.4672 1.4828 -1.4138 9 14 3.1332 1.8908 -2.8494 10 1 2.8705 3.3467 -2.9788 11 1 3.8701 1.4125 -4.0466 12 1 1.8434 1.1630 -2.7385 13 7 1.6259 2.1083 1.2422 14 6 2.2793 1.5001 2.4083 15 6 1.7176 2.1193 3.6900 16 6 1.9642 3.6305 3.6727 17 6 1.3141 4.2314 2.4234 18 6 1.8881 3.5517 1.1783 19 1 2.9635 3.7239 1.1338 20 6 1.2365 4.1264 -0.0531 21 6 1.7036 5.4485 -0.6054 22 8 0.3401 3.5275 -0.5971 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8997 1.5769 -2.2768 29 1 3.3530 1.6813 2.3576 30 1 2.0920 0.4263 2.4113 31 1 2.2145 1.6795 4.5547 32 1 0.6465 1.9261 3.7484 33 1 1.5270 4.0812 4.5636 34 1 3.0367 3.8243 3.6542 35 1 0.2365 4.0714 2.4613 36 1 1.5226 5.3005 2.3832 37 1 2.7576 5.3781 -0.8737 38 1 1.1195 5.6990 -1.4909 39 1 1.5717 6.2243 0.1488 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:16 Heat of formation + Delta-G solvation = -44.211367 kcal Electronic energy + Delta-G solvation = -18975.878011 eV Core-core repulsion = 16304.165515 eV Total energy + Delta-G solvation = -2671.712496 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.70616 -37.33600 -34.77630 -32.09021 -31.32661 -30.63924 -29.03601 -27.05207 -23.89049 -23.18172 -22.37704 -19.79391 -19.36733 -18.47931 -16.85565 -15.84841 -15.20306 -14.59854 -14.44526 -14.18844 -13.68833 -13.39637 -13.13382 -12.98304 -12.73267 -12.50543 -12.10098 -11.85401 -11.75701 -11.54125 -11.40354 -10.92172 -10.75963 -10.74115 -10.51596 -10.45395 -9.90296 -9.87682 -9.73683 -9.51728 -9.24063 -8.69493 -8.51979 -7.08644 -6.15655 -4.16323 2.58641 3.23163 3.33378 3.43816 4.36589 4.45232 4.93418 5.19342 5.23358 5.33083 5.40745 5.51575 5.64665 5.80159 5.91092 5.97488 6.03897 6.07440 6.20440 6.22830 6.30385 6.32746 6.38185 6.40885 6.44503 6.56285 6.66231 6.85311 6.87484 6.91882 7.13079 7.30737 7.34707 7.58064 8.00091 8.19845 8.28767 8.46188 8.90083 9.50209 10.96701 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.020160 B = 0.012003 C = 0.010774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.572799 B = 2332.184327 C = 2598.309876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C 0.165 3.835 4 H 0.058 0.942 5 C -0.546 4.546 6 H 0.078 0.922 7 C 0.080 3.920 8 N -0.895 5.895 9 Si 0.860 3.140 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.259 1.259 13 N -0.512 5.512 14 C 0.058 3.942 15 C -0.118 4.118 16 C -0.115 4.115 17 C -0.102 4.102 18 C 0.045 3.955 19 H 0.076 0.924 20 C 0.361 3.639 21 C -0.206 4.206 22 O -0.443 6.443 23 H 0.058 0.942 24 H 0.041 0.959 25 H 0.028 0.972 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.263 0.737 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.803 5.781 6.772 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 C 0.059 3.941 4 H 0.076 0.924 5 C -0.585 4.585 6 H 0.096 0.904 7 C -0.123 4.123 8 N -0.533 5.533 9 Si 0.687 3.313 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.183 1.183 13 N -0.236 5.236 14 C -0.070 4.070 15 C -0.156 4.156 16 C -0.152 4.152 17 C -0.140 4.140 18 C -0.065 4.065 19 H 0.093 0.907 20 C 0.236 3.764 21 C -0.263 4.263 22 O -0.316 6.316 23 H 0.077 0.923 24 H 0.061 0.939 25 H 0.047 0.953 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.641 5.389 6.394 11.327 hybrid contribution 0.743 0.293 -1.097 1.357 sum -6.897 5.683 5.297 10.389 Atomic orbital electron populations 1.21706 0.97609 0.98631 1.01784 1.21660 0.93636 0.98659 1.00362 1.19956 0.93874 0.91498 0.88815 0.92411 1.21713 0.90762 1.50949 0.95082 0.90380 1.24990 0.94562 0.94241 0.98541 1.69916 1.08618 1.49611 1.25143 0.87109 0.81422 0.79490 0.83329 1.20026 1.21420 1.18316 1.62300 1.57352 0.99769 1.04211 1.21968 0.97272 0.98597 0.89139 1.21640 1.01264 0.95016 0.97661 1.21511 1.00558 0.96332 0.96829 1.21477 1.00738 0.98247 0.93551 1.21846 0.99769 0.91581 0.93318 0.90662 1.24509 0.81007 0.86410 0.84515 1.22358 1.04277 0.97267 1.02441 1.90335 1.25337 1.59282 1.56600 0.92267 0.93949 0.95308 0.93250 0.93164 0.92666 0.93697 0.91117 0.92476 0.91921 0.92452 0.92093 0.91429 0.91984 0.88948 0.90653 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.79 37.16 0.36 -2.43 16 2 C -0.10 -2.35 5.29 -26.73 -0.14 -2.49 16 3 C 0.17 3.93 0.97 -68.87 -0.07 3.86 16 4 H 0.06 1.48 2.57 -51.93 -0.13 1.34 16 5 C -0.55 -14.70 7.62 -34.44 -0.26 -14.96 16 6 H 0.08 2.26 6.16 -52.49 -0.32 1.94 16 7 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 8 N -0.90 -26.67 13.96 55.43 0.77 -25.89 16 9 Si 0.86 21.86 26.99 -169.99 -4.59 17.27 16 10 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.26 -6.62 6.82 56.52 0.39 -6.23 16 13 N -0.51 -10.54 3.60 -221.53 -0.80 -11.34 16 14 C 0.06 1.10 4.75 -3.83 -0.02 1.08 16 15 C -0.12 -1.76 6.09 -26.65 -0.16 -1.92 16 16 C -0.11 -1.56 6.00 -26.61 -0.16 -1.72 16 17 C -0.10 -1.50 5.36 -26.65 -0.14 -1.64 16 18 C 0.04 0.84 1.91 -68.88 -0.13 0.71 16 19 H 0.08 1.53 7.60 -51.93 -0.39 1.14 16 20 C 0.36 6.94 5.57 -29.03 -0.16 6.78 16 21 C -0.21 -3.12 10.26 36.01 0.37 -2.76 16 22 O -0.44 -9.87 15.36 6.00 0.09 -9.78 16 23 H 0.06 1.16 7.71 -51.93 -0.40 0.76 16 24 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.05 1.08 6.27 -51.93 -0.33 0.75 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.04 0.94 6.26 -51.93 -0.33 0.62 16 30 H 0.07 1.35 6.14 -51.93 -0.32 1.03 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 38 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 298.72 15.07 4.50 4.50 Total: -1.00 -30.32 298.72 -7.07 -37.39 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.44 Total: 1.17 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -0.61 Total: -13.33 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.02 Total: -37.23 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.59 Total: 17.27 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.32 -7.07 -37.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.817 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds