Wall clock time and date at job start Mon Mar 30 2020 17:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47479 * 2 1 4 4 H 1.09005 * 109.46780 * 303.75523 * 3 2 1 5 5 C 1.50694 * 109.47438 * 183.75585 * 3 2 1 6 6 H 1.07992 * 120.00442 * 275.13928 * 5 3 2 7 7 C 1.37882 * 119.99884 * 95.13381 * 5 3 2 8 8 N 1.31510 * 120.00184 * 184.81690 * 7 5 3 9 9 Si 1.86801 * 120.00124 * 4.82190 * 7 5 3 10 10 H 1.48504 * 109.47132 * 84.85446 * 9 7 5 11 11 H 1.48496 * 109.47335 * 204.85582 * 9 7 5 12 12 H 1.48505 * 109.46852 * 324.85676 * 9 7 5 13 13 N 1.46899 * 109.47219 * 63.75247 * 3 2 1 14 14 C 1.46858 * 110.99045 * 65.74838 * 13 3 2 15 15 C 1.53035 * 109.52049 * 185.79850 * 14 13 3 16 16 C 1.53121 * 109.31594 * 300.88851 * 15 14 13 17 17 C 1.53117 * 109.16053 * 57.62815 * 16 15 14 18 18 C 1.46840 * 111.00248 * 190.00077 * 13 3 2 19 19 H 1.09000 * 109.46648 * 294.17930 * 18 13 3 20 20 C 1.50702 * 109.46208 * 54.14789 * 18 13 3 21 21 C 1.50704 * 120.00061 * 200.05079 * 20 18 13 22 22 O 1.20758 * 119.99688 * 20.05499 * 20 18 13 23 23 H 1.09003 * 109.47162 * 299.99858 * 1 2 3 24 24 H 1.09000 * 109.47353 * 59.99985 * 1 2 3 25 25 H 1.08997 * 109.47591 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47162 * 240.00141 * 2 1 3 27 27 H 1.09000 * 109.47353 * 120.00015 * 2 1 3 28 28 H 0.96995 * 120.00263 * 180.02562 * 8 7 5 29 29 H 1.09001 * 109.42118 * 65.81100 * 14 13 3 30 30 H 1.08994 * 109.49781 * 305.84000 * 14 13 3 31 31 H 1.08994 * 109.50527 * 180.92582 * 15 14 13 32 32 H 1.09004 * 109.50018 * 60.84500 * 15 14 13 33 33 H 1.08997 * 109.52810 * 177.54213 * 16 15 14 34 34 H 1.09009 * 109.51785 * 297.73023 * 16 15 14 35 35 H 1.09002 * 109.49868 * 62.29394 * 17 16 15 36 36 H 1.08999 * 109.50580 * 182.40775 * 17 16 15 37 37 H 1.08996 * 109.46605 * 60.00343 * 21 20 18 38 38 H 1.08996 * 109.46703 * 179.97438 * 21 20 18 39 39 H 1.09001 * 109.47105 * 300.00146 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6228 1.9753 -0.8545 5 6 3.5441 1.4435 -0.0931 6 1 4.1406 1.3397 0.8012 7 6 4.1588 1.5767 -1.3201 8 7 5.4672 1.4828 -1.4138 9 14 3.1332 1.8908 -2.8494 10 1 2.8705 3.3467 -2.9788 11 1 3.8701 1.4125 -4.0466 12 1 1.8434 1.1630 -2.7385 13 7 1.6259 2.1083 1.2422 14 6 2.2793 1.5001 2.4083 15 6 1.7176 2.1193 3.6900 16 6 1.9642 3.6305 3.6727 17 6 1.3141 4.2314 2.4234 18 6 1.8881 3.5517 1.1783 19 1 2.9635 3.7239 1.1338 20 6 1.2365 4.1264 -0.0531 21 6 1.7036 5.4485 -0.6054 22 8 0.3401 3.5275 -0.5971 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 5.8997 1.5769 -2.2768 29 1 3.3530 1.6813 2.3576 30 1 2.0920 0.4263 2.4113 31 1 2.2145 1.6795 4.5547 32 1 0.6465 1.9261 3.7484 33 1 1.5270 4.0812 4.5636 34 1 3.0367 3.8243 3.6542 35 1 0.2365 4.0714 2.4613 36 1 1.5226 5.3005 2.3832 37 1 2.7576 5.3781 -0.8737 38 1 1.1195 5.6990 -1.4909 39 1 1.5717 6.2243 0.1488 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173934.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:16 Heat of formation + Delta-G solvation = -63.385052 kcal Electronic energy + Delta-G solvation = -18976.709444 eV Core-core repulsion = 16304.165515 eV Total energy + Delta-G solvation = -2672.543929 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.23821 -38.87633 -36.40060 -34.19546 -32.73471 -32.17030 -30.31829 -28.95820 -25.51596 -24.56842 -24.10713 -21.20277 -20.99350 -20.11396 -18.86445 -17.47883 -16.70486 -16.27975 -16.06578 -15.75853 -15.22220 -14.92975 -14.71260 -14.55363 -14.32620 -13.96426 -13.70829 -13.35698 -13.35460 -13.05637 -12.92043 -12.80619 -12.50420 -12.21740 -11.90440 -11.78507 -11.68811 -11.67460 -11.43502 -11.14311 -11.01672 -10.70845 -10.15102 -8.82187 -8.36382 -6.37916 1.10825 1.18434 1.24838 1.37188 2.24124 2.93977 3.08046 3.47796 4.00316 4.10554 4.16302 4.29612 4.37503 4.42319 4.53969 4.57748 4.62771 4.66472 4.69640 4.79396 4.88803 4.99970 5.06717 5.10896 5.13444 5.15925 5.20928 5.27220 5.31678 5.41311 5.47331 5.50180 5.61242 5.65878 6.17504 6.37996 6.55408 6.72444 6.75668 7.31435 8.79508 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.020160 B = 0.012003 C = 0.010774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.572799 B = 2332.184327 C = 2598.309876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.107 4.107 3 C 0.167 3.833 4 H 0.046 0.954 5 C -0.533 4.533 6 H 0.048 0.952 7 C 0.034 3.966 8 N -0.938 5.938 9 Si 0.907 3.093 10 H -0.262 1.262 11 H -0.284 1.284 12 H -0.263 1.263 13 N -0.510 5.510 14 C 0.059 3.941 15 C -0.111 4.111 16 C -0.112 4.112 17 C -0.096 4.096 18 C 0.036 3.964 19 H 0.054 0.946 20 C 0.353 3.647 21 C -0.202 4.202 22 O -0.480 6.480 23 H 0.062 0.938 24 H 0.029 0.971 25 H 0.055 0.945 26 H 0.031 0.969 27 H 0.054 0.946 28 H 0.265 0.735 29 H 0.014 0.986 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.495 7.160 7.950 13.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.146 4.146 3 C 0.060 3.940 4 H 0.064 0.936 5 C -0.572 4.572 6 H 0.066 0.934 7 C -0.165 4.165 8 N -0.578 5.578 9 Si 0.732 3.268 10 H -0.187 1.187 11 H -0.210 1.210 12 H -0.187 1.187 13 N -0.234 5.234 14 C -0.069 4.069 15 C -0.148 4.148 16 C -0.150 4.150 17 C -0.133 4.133 18 C -0.073 4.073 19 H 0.071 0.929 20 C 0.230 3.770 21 C -0.259 4.259 22 O -0.355 6.355 23 H 0.081 0.919 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.337 6.785 7.590 13.814 hybrid contribution 1.306 -0.159 -1.371 1.900 sum -8.031 6.626 6.220 12.128 Atomic orbital electron populations 1.21557 0.95263 1.00276 1.01259 1.21617 0.95700 0.97586 0.99688 1.19829 0.91362 0.92567 0.90281 0.93621 1.21913 0.92542 1.49029 0.93727 0.93415 1.25576 0.95231 0.94677 1.01038 1.70021 1.10050 1.51870 1.25816 0.86344 0.79829 0.79958 0.80640 1.18734 1.21038 1.18737 1.62299 1.56947 1.00988 1.03200 1.22002 0.95600 0.98578 0.90709 1.21602 1.01515 0.96042 0.95686 1.21534 1.00478 0.95244 0.97721 1.21517 1.00483 0.99732 0.91614 1.22063 0.98773 0.90678 0.95831 0.92862 1.25104 0.80169 0.87563 0.84122 1.22377 1.03588 0.96113 1.03839 1.90321 1.27145 1.60610 1.57441 0.91896 0.95228 0.92576 0.95018 0.92783 0.92589 0.96764 0.92004 0.90535 0.91202 0.89010 0.92635 0.91267 0.88774 0.89470 0.90153 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 9.79 71.98 0.70 -4.18 16 2 C -0.11 -4.83 5.29 30.59 0.16 -4.67 16 3 C 0.17 8.04 0.97 44.17 0.04 8.08 16 4 H 0.05 2.34 2.57 -2.38 -0.01 2.34 16 5 C -0.53 -29.54 7.62 25.60 0.20 -29.35 16 6 H 0.05 2.90 6.16 -2.91 -0.02 2.88 16 7 C 0.03 1.95 5.47 84.66 0.46 2.41 16 8 N -0.94 -57.40 13.96 21.45 0.30 -57.10 16 9 Si 0.91 45.66 26.99 68.60 1.85 47.51 16 10 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 12 H -0.26 -13.31 6.82 99.48 0.68 -12.63 16 13 N -0.51 -20.84 3.60 -854.77 -3.08 -23.92 16 14 C 0.06 2.22 4.75 86.32 0.41 2.63 16 15 C -0.11 -3.03 6.09 30.65 0.19 -2.85 16 16 C -0.11 -2.69 6.00 30.67 0.18 -2.51 16 17 C -0.10 -2.50 5.36 30.65 0.16 -2.34 16 18 C 0.04 1.33 1.91 44.19 0.08 1.41 16 19 H 0.05 2.18 7.60 -2.39 -0.02 2.16 16 20 C 0.35 13.10 5.57 29.10 0.16 13.26 16 21 C -0.20 -5.65 10.26 71.24 0.73 -4.92 16 22 O -0.48 -20.98 15.36 -1.45 -0.02 -21.00 16 23 H 0.06 2.37 7.71 -2.39 -0.02 2.35 16 24 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 2.34 6.27 -2.39 -0.01 2.33 16 28 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.01 0.61 6.26 -2.39 -0.01 0.60 16 30 H 0.06 2.37 6.14 -2.39 -0.01 2.36 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.80 16 32 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.08 2.17 8.12 -2.39 -0.02 2.16 16 39 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -67.32 298.72 3.53 -63.80 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.98 Total: 13.73 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 3.49 Total: -23.02 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -2.78 Total: -81.02 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.02 Total: -21.00 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.85 Total: 47.51 kcal Total: -67.32 3.53 -63.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173934.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.414 kcal (2) G-P(sol) polarization free energy of solvation -67.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds