Wall clock time and date at job start Mon Mar 30 2020 17:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47259 * 2 1 4 4 H 1.09005 * 109.46945 * 303.39924 * 3 2 1 5 5 C 1.50696 * 109.47488 * 183.39613 * 3 2 1 6 6 H 1.08003 * 120.00245 * 239.99687 * 5 3 2 7 7 C 1.37878 * 120.00206 * 59.99978 * 5 3 2 8 8 N 1.31519 * 119.99812 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00431 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46973 * 0.02562 * 9 7 5 11 11 H 1.48509 * 109.47080 * 119.99881 * 9 7 5 12 12 H 1.48494 * 109.47389 * 239.99861 * 9 7 5 13 13 N 1.46902 * 109.47026 * 63.39524 * 3 2 1 14 14 C 1.47978 * 110.99821 * 60.15467 * 13 3 2 15 15 C 1.54105 * 106.95850 * 148.17640 * 14 13 3 16 16 H 1.08994 * 112.99680 * 119.24293 * 15 14 13 17 17 O 1.44393 * 108.98755 * 244.34497 * 15 14 13 18 18 C 1.44379 * 105.58987 * 150.68676 * 17 15 14 19 19 C 1.54544 * 104.38421 * 318.21641 * 18 17 15 20 20 H 1.09006 * 110.65490 * 146.10393 * 19 18 17 21 21 C 1.53007 * 110.53658 * 268.81655 * 19 18 17 22 22 C 1.54235 * 103.93842 * 27.43124 * 19 18 17 23 23 H 1.09005 * 112.97469 * 118.97934 * 22 19 18 24 24 C 1.50802 * 110.84546 * 177.16972 * 13 3 2 25 25 H 1.09002 * 109.47011 * 174.98528 * 1 2 3 26 26 H 1.08993 * 109.47396 * 294.98764 * 1 2 3 27 27 H 1.09005 * 109.46817 * 54.99172 * 1 2 3 28 28 H 1.09001 * 109.47777 * 239.99791 * 2 1 3 29 29 H 1.09006 * 109.47172 * 119.99583 * 2 1 3 30 30 H 0.97001 * 120.00159 * 179.97438 * 8 7 5 31 31 H 1.08995 * 109.96692 * 28.79699 * 14 13 3 32 32 H 1.08995 * 109.99012 * 267.56621 * 14 13 3 33 33 H 1.08995 * 110.44721 * 199.48588 * 18 17 15 34 34 H 1.09001 * 110.55773 * 76.99498 * 18 17 15 35 35 H 1.08996 * 109.46808 * 166.82307 * 21 19 18 36 36 H 1.08994 * 109.47134 * 286.82391 * 21 19 18 37 37 H 1.09002 * 109.46602 * 46.82741 * 21 19 18 38 38 H 1.08999 * 111.54631 * 80.68349 * 24 13 3 39 39 H 1.09005 * 110.79107 * 316.80393 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6277 1.9736 -0.8580 5 6 3.5446 1.4434 -0.0842 6 1 4.1293 1.8953 0.7035 7 6 4.1749 0.8673 -1.1667 8 7 3.4630 0.3165 -2.1256 9 14 6.0399 0.8690 -1.2714 10 1 6.6022 1.5451 -0.0749 11 1 6.5339 -0.5304 -1.3265 12 1 6.4663 1.5929 -2.4958 13 7 1.6184 2.1109 1.2384 14 6 2.1636 1.4181 2.4269 15 6 2.3999 2.4935 3.5050 16 1 1.8183 2.3234 4.4109 17 8 3.8147 2.5793 3.7808 18 6 4.0488 3.9450 4.1866 19 6 3.1958 4.7870 3.2109 20 1 2.8045 5.6740 3.7094 21 6 4.0183 5.1823 1.9827 22 6 2.0461 3.8401 2.8103 23 1 1.0638 4.2219 3.0887 24 6 2.1636 3.5154 1.3024 25 1 -0.3633 -1.0238 -0.0898 26 1 -0.3634 0.4341 0.9314 27 1 -0.3633 0.5896 -0.8418 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.9063 -0.0884 -2.8874 31 1 3.1053 0.9309 2.1744 32 1 1.4481 0.6796 2.7885 33 1 5.1043 4.1969 4.0846 34 1 3.7183 4.1012 5.2135 35 1 3.3537 5.5657 1.2086 36 1 4.7368 5.9536 2.2596 37 1 4.5500 4.3088 1.6052 38 1 1.5614 4.2059 0.7118 39 1 3.2055 3.5410 0.9830 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255175612.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:38 Heat of formation + Delta-G solvation = -55.480439 kcal Electronic energy + Delta-G solvation = -18804.184116 eV Core-core repulsion = 16131.982957 eV Total energy + Delta-G solvation = -2672.201160 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.46934 -38.27082 -35.29442 -34.46315 -33.22426 -30.47907 -28.46311 -27.85037 -27.47950 -24.99429 -22.95261 -22.20971 -20.76173 -20.14411 -18.59164 -17.63429 -17.34678 -16.45685 -16.14221 -15.40313 -15.05798 -14.94370 -14.62844 -14.27581 -13.85279 -13.75302 -13.56139 -13.27202 -13.04093 -12.74817 -12.55568 -12.45505 -12.30212 -12.07004 -11.80905 -11.68540 -11.61654 -11.50138 -11.36698 -11.21981 -10.87402 -10.56887 -10.42456 -8.98578 -8.04018 -6.23363 1.32259 1.35980 1.46264 2.39160 2.96433 3.14913 3.42338 3.69294 3.80534 3.95966 4.21373 4.25624 4.36037 4.55410 4.59182 4.60733 4.72320 4.76286 4.80122 4.89232 4.92281 4.97977 5.04705 5.08276 5.15719 5.17623 5.25046 5.31575 5.41626 5.45179 5.51845 5.62842 5.76328 6.01786 6.07984 6.19178 6.35180 6.50246 6.96580 7.45611 8.92209 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.020584 B = 0.010813 C = 0.008275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.968247 B = 2588.828979 C = 3383.076337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 C 0.210 3.790 4 H 0.005 0.995 5 C -0.539 4.539 6 H 0.050 0.950 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.940 3.060 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.279 1.279 13 N -0.511 5.511 14 C 0.043 3.957 15 C 0.069 3.931 16 H 0.103 0.897 17 O -0.401 6.401 18 C 0.043 3.957 19 C -0.113 4.113 20 H 0.113 0.887 21 C -0.142 4.142 22 C -0.110 4.110 23 H 0.114 0.886 24 C 0.030 3.970 25 H 0.045 0.955 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.062 0.938 29 H 0.027 0.973 30 H 0.260 0.740 31 H 0.036 0.964 32 H 0.075 0.925 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.031 0.969 38 H 0.067 0.933 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 8.141 11.263 14.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.146 4.146 3 C 0.102 3.898 4 H 0.022 0.978 5 C -0.578 4.578 6 H 0.068 0.932 7 C -0.178 4.178 8 N -0.551 5.551 9 Si 0.767 3.233 10 H -0.200 1.200 11 H -0.208 1.208 12 H -0.205 1.205 13 N -0.235 5.235 14 C -0.085 4.085 15 C 0.012 3.988 16 H 0.121 0.879 17 O -0.321 6.321 18 C -0.033 4.033 19 C -0.132 4.132 20 H 0.131 0.869 21 C -0.199 4.199 22 C -0.129 4.129 23 H 0.132 0.868 24 C -0.097 4.097 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.648 7.854 11.052 13.815 hybrid contribution 1.930 -0.294 -0.727 2.083 sum -0.718 7.559 10.325 12.817 Atomic orbital electron populations 1.21559 0.96042 0.99700 1.00857 1.21445 0.94663 0.98212 1.00258 1.19162 0.91747 0.91444 0.87421 0.97758 1.21948 0.93832 1.36632 1.05403 0.93235 1.25557 1.01480 0.95149 0.95618 1.70004 1.36066 1.38849 1.10160 0.85780 0.82101 0.77692 0.77746 1.20001 1.20756 1.20474 1.65844 1.53176 1.02221 1.02262 1.22744 0.98550 0.96392 0.90851 1.23952 0.82175 0.95642 0.97077 0.87927 1.89152 1.24997 1.29765 1.88185 1.23695 1.00877 0.80730 0.97976 1.22492 0.94953 0.99040 0.96720 0.86904 1.21896 0.99958 1.00333 0.97692 1.23383 1.00056 0.94484 0.95005 0.86788 1.23873 0.99688 0.90501 0.95625 0.93594 0.92447 0.94667 0.91995 0.95415 0.93027 0.94576 0.90681 0.89193 0.90073 0.92189 0.91026 0.95017 0.91487 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 9.72 71.98 0.70 -4.35 16 2 C -0.11 -5.25 5.09 30.59 0.16 -5.09 16 3 C 0.21 10.72 1.90 44.17 0.08 10.80 16 4 H 0.00 0.26 8.14 -2.38 -0.02 0.24 16 5 C -0.54 -29.79 6.39 25.60 0.16 -29.63 16 6 H 0.05 2.83 5.95 -2.91 -0.02 2.81 16 7 C 0.02 1.21 5.30 84.65 0.45 1.65 16 8 N -0.91 -52.89 11.30 21.45 0.24 -52.65 16 9 Si 0.94 45.00 29.54 68.60 2.03 47.03 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 13 N -0.51 -21.87 4.85 -855.91 -4.15 -26.01 16 14 C 0.04 1.74 4.76 86.47 0.41 2.15 16 15 C 0.07 2.25 4.35 31.86 0.14 2.38 16 16 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 17 O -0.40 -14.24 11.13 -148.98 -1.66 -15.90 16 18 C 0.04 1.11 7.14 72.51 0.52 1.63 16 19 C -0.11 -2.76 3.69 -9.85 -0.04 -2.80 16 20 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 21 C -0.14 -3.90 7.76 71.98 0.56 -3.35 16 22 C -0.11 -3.22 4.14 -8.90 -0.04 -3.26 16 23 H 0.11 2.80 8.14 -2.38 -0.02 2.78 16 24 C 0.03 1.16 4.56 86.11 0.39 1.55 16 25 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.06 2.17 7.85 -2.39 -0.02 2.15 16 27 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.06 3.42 5.99 -2.39 -0.01 3.40 16 29 H 0.03 1.34 6.95 -2.38 -0.02 1.32 16 30 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 31 H 0.04 1.74 5.93 -2.39 -0.01 1.73 16 32 H 0.07 2.82 8.05 -2.39 -0.02 2.80 16 33 H 0.09 2.19 7.91 -2.39 -0.02 2.17 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.65 7.18 -2.39 -0.02 1.63 16 36 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.03 1.11 6.74 -2.39 -0.02 1.10 16 38 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.06 2.58 3.16 -2.38 -0.01 2.57 16 Total: -1.00 -62.41 290.23 0.97 -61.44 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 1.02 Total: 14.39 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 3.50 Total: -28.30 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -3.91 Total: -78.66 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -1.66 Total: -15.90 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -62.41 0.97 -61.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255175612.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.958 kcal (2) G-P(sol) polarization free energy of solvation -62.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds