Wall clock time and date at job start Mon Mar 30 2020 17:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47300 * 2 1 4 4 C 1.53000 * 109.46743 * 120.00049 * 2 1 3 5 5 C 1.50698 * 109.47028 * 294.99950 * 4 2 1 6 6 H 1.07999 * 120.00296 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00013 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00095 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00271 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47476 * 89.99368 * 9 7 5 11 11 H 1.48498 * 109.47198 * 209.99763 * 9 7 5 12 12 H 1.48502 * 109.46936 * 329.99544 * 9 7 5 13 13 C 1.52996 * 109.47192 * 239.99705 * 2 1 3 14 14 N 1.46899 * 109.47047 * 65.00402 * 13 2 1 15 15 C 1.48215 * 111.00295 * 77.95614 * 14 13 2 16 16 C 1.54151 * 86.41914 * 136.46918 * 15 14 13 17 17 C 1.46646 * 111.00146 * 176.84145 * 14 13 2 18 18 C 1.53377 * 116.04953 * 341.07059 * 17 14 13 19 19 C 1.54775 * 103.59840 * 129.51560 * 18 17 14 20 20 O 1.44528 * 104.87122 * 23.77827 * 19 18 17 21 21 C 1.44707 * 105.50733 * 320.24243 * 20 19 18 22 22 H 1.09000 * 109.47300 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47427 * 300.00408 * 1 2 3 24 24 H 1.09007 * 109.46678 * 60.00003 * 1 2 3 25 25 H 1.09000 * 109.47142 * 55.00010 * 4 2 1 26 26 H 1.09003 * 109.47348 * 174.99898 * 4 2 1 27 27 H 0.97003 * 120.00260 * 180.02562 * 8 7 5 28 28 H 1.08994 * 109.47483 * 305.00390 * 13 2 1 29 29 H 1.09003 * 109.46939 * 185.00042 * 13 2 1 30 30 H 1.09006 * 113.71664 * 22.09029 * 15 14 13 31 31 H 1.08999 * 113.81399 * 250.86555 * 15 14 13 32 32 H 1.08992 * 113.80591 * 222.94553 * 16 15 14 33 33 H 1.08996 * 113.90403 * 91.45242 * 16 15 14 34 34 H 1.09005 * 110.59972 * 248.04424 * 18 17 14 35 35 H 1.09001 * 110.59656 * 10.98944 * 18 17 14 36 36 H 1.09003 * 110.35689 * 142.62741 * 19 18 17 37 37 H 1.09000 * 110.35986 * 264.82327 * 19 18 17 38 38 H 1.09001 * 110.42903 * 280.60380 * 21 20 19 39 39 H 1.08997 * 110.43146 * 158.11205 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9930 -0.4017 3.7283 8 7 2.6761 -1.5188 3.8513 9 14 1.4982 0.5626 5.2497 10 1 0.1713 0.0935 5.7233 11 1 2.5077 0.3532 6.3185 12 1 1.4224 2.0078 4.9167 13 6 2.0400 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.5382 1.2084 -2.6432 16 6 2.5606 0.8180 -4.1343 17 6 2.1880 -0.5853 -3.6600 18 6 3.3573 -1.5573 -3.4584 19 6 2.9178 -2.8214 -4.2358 20 8 1.9688 -2.3433 -5.2153 21 6 1.1786 -1.3420 -4.5319 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.6052 -1.7198 1.2951 26 1 3.1262 -0.7996 1.2057 27 1 2.9233 -1.8417 4.7319 28 1 1.6054 -1.7198 -1.2951 29 1 3.1263 -0.7995 -1.2055 30 1 3.5059 1.1137 -2.1505 31 1 2.0539 2.1652 -2.4476 32 1 3.5485 0.8802 -4.5906 33 1 1.7857 1.3014 -4.7291 34 1 4.2744 -1.1468 -3.8808 35 1 3.4891 -1.7842 -2.4004 36 1 3.7745 -3.2797 -4.7299 37 1 2.4430 -3.5349 -3.5622 38 1 0.4190 -1.8159 -3.9102 39 1 0.7157 -0.6665 -5.2512 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331741051.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:46:57 Heat of formation + Delta-G solvation = -21.120660 kcal Electronic energy + Delta-G solvation = -17827.489001 eV Core-core repulsion = 15156.777793 eV Total energy + Delta-G solvation = -2670.711208 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.09772 -37.69127 -35.21139 -32.33254 -30.70726 -29.40019 -28.31690 -26.72461 -24.76394 -23.10832 -22.69312 -22.21639 -19.15284 -18.39183 -16.59999 -16.39783 -16.02219 -15.38540 -15.23532 -14.49024 -14.41659 -14.22817 -13.56046 -12.91686 -12.50771 -12.40861 -12.06791 -11.95099 -11.67973 -11.49707 -11.37107 -11.06174 -10.85495 -10.79709 -10.61572 -10.47312 -10.27587 -10.15747 -9.76545 -9.67721 -9.13812 -8.96338 -8.52707 -8.34409 -5.99218 -4.00323 3.32078 3.38394 3.41623 3.81469 4.01487 4.39099 4.46795 4.54727 4.85897 4.98091 5.09655 5.20366 5.35479 5.37354 5.46274 5.62436 5.64030 5.67760 5.73615 5.75984 5.82428 5.84051 5.90669 6.11363 6.16223 6.29756 6.45770 6.52287 6.69819 6.81112 7.01686 7.17275 7.19339 7.35198 7.66677 7.82459 8.00682 8.44960 9.05901 9.63216 11.12344 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.041040 B = 0.005196 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.090647 B = 5387.594203 C = 5629.946233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.077 4.077 3 H 0.054 0.946 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.024 3.976 14 N -0.458 5.458 15 C 0.005 3.995 16 C -0.131 4.131 17 C 0.025 3.975 18 C -0.174 4.174 19 C 0.050 3.950 20 O -0.380 6.380 21 C 0.070 3.930 22 H 0.038 0.962 23 H 0.054 0.946 24 H 0.041 0.959 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.259 0.741 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 1.516 -15.955 16.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.096 4.096 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.104 4.104 14 N -0.180 5.180 15 C -0.124 4.124 16 C -0.169 4.169 17 C -0.067 4.067 18 C -0.213 4.213 19 C -0.027 4.027 20 O -0.299 6.299 21 C -0.007 4.007 22 H 0.058 0.942 23 H 0.073 0.927 24 H 0.060 0.940 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.033 1.403 -15.952 16.013 hybrid contribution 0.731 0.268 1.320 1.533 sum 0.697 1.671 -14.631 14.743 Atomic orbital electron populations 1.21594 0.95775 1.00481 1.00219 1.21131 0.95926 0.98970 0.93556 0.92711 1.19130 0.95814 0.95559 0.90519 1.21226 1.34557 1.08310 0.90960 0.92584 1.25018 0.95300 0.95105 0.99100 1.69963 1.39103 1.21274 1.23382 0.86628 0.78246 0.80431 0.82912 1.20695 1.21304 1.19906 1.22905 0.98203 0.98096 0.91202 1.68354 1.44207 1.04612 1.00862 1.23882 0.96743 0.96850 0.94900 1.23309 1.01971 0.94540 0.97035 1.23203 0.94140 0.94997 0.94345 1.23259 0.98455 0.96189 1.03375 1.23391 0.92630 0.95699 0.91011 1.89136 1.49238 1.56570 1.34914 1.23062 0.93118 0.89710 0.94821 0.94243 0.92674 0.93994 0.96636 0.97023 0.93092 0.91317 0.93839 0.91121 0.89371 0.91058 0.89172 0.90245 0.88309 0.89239 0.92105 0.91470 0.88772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.08 -1.57 2.42 -90.62 -0.22 -1.79 16 3 H 0.05 1.15 7.71 -51.93 -0.40 0.75 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.34 8.41 -34.44 -0.29 -14.63 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.02 0.40 3.03 -3.83 -0.01 0.39 16 14 N -0.46 -6.73 5.57 -222.02 -1.24 -7.96 16 15 C 0.00 0.06 7.31 -2.71 -0.02 0.04 16 16 C -0.13 -1.45 7.55 -26.28 -0.20 -1.65 16 17 C 0.02 0.31 1.27 -131.71 -0.17 0.14 16 18 C -0.17 -2.08 6.06 -25.60 -0.16 -2.24 16 19 C 0.05 0.57 7.66 38.09 0.29 0.87 16 20 O -0.38 -5.08 11.66 -35.23 -0.41 -5.49 16 21 C 0.07 0.88 7.29 37.34 0.27 1.15 16 22 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.05 1.15 6.95 -51.93 -0.36 0.79 16 24 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.07 1.20 8.13 -51.93 -0.42 0.78 16 29 H 0.04 0.74 5.77 -51.93 -0.30 0.44 16 30 H 0.07 0.94 7.65 -51.93 -0.40 0.54 16 31 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 0.71 7.89 -51.93 -0.41 0.30 16 33 H 0.09 0.92 7.97 -51.93 -0.41 0.50 16 34 H 0.08 0.86 7.79 -51.93 -0.40 0.45 16 35 H 0.10 1.29 5.02 -51.93 -0.26 1.03 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.04 7.85 -51.93 -0.41 0.63 16 LS Contribution 304.02 15.07 4.58 4.58 Total: -1.00 -29.98 304.02 -8.38 -38.36 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -6.64 Total: -2.21 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -0.39 Total: -17.75 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: -0.50 Total: -34.17 kcal Atomic # 8 Polarization: -5.08 SS G_CDS: -0.41 Total: -5.49 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -29.98 -8.38 -38.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331741051.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.238 kcal (2) G-P(sol) polarization free energy of solvation -29.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds