Wall clock time and date at job start Mon Mar 30 2020 17:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47300 * 2 1 4 4 C 1.53000 * 109.46743 * 120.00049 * 2 1 3 5 5 C 1.50698 * 109.47028 * 294.99950 * 4 2 1 6 6 H 1.07999 * 120.00296 * 0.02562 * 5 4 2 7 7 C 1.37882 * 120.00013 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00095 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00271 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47476 * 89.99368 * 9 7 5 11 11 H 1.48498 * 109.47198 * 209.99763 * 9 7 5 12 12 H 1.48502 * 109.46936 * 329.99544 * 9 7 5 13 13 C 1.52996 * 109.47192 * 239.99705 * 2 1 3 14 14 N 1.46899 * 109.47047 * 65.00402 * 13 2 1 15 15 C 1.48215 * 111.00295 * 77.95614 * 14 13 2 16 16 C 1.54151 * 86.41914 * 136.46918 * 15 14 13 17 17 C 1.46646 * 111.00146 * 176.84145 * 14 13 2 18 18 C 1.53377 * 116.04953 * 341.07059 * 17 14 13 19 19 C 1.54775 * 103.59840 * 129.51560 * 18 17 14 20 20 O 1.44528 * 104.87122 * 23.77827 * 19 18 17 21 21 C 1.44707 * 105.50733 * 320.24243 * 20 19 18 22 22 H 1.09000 * 109.47300 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47427 * 300.00408 * 1 2 3 24 24 H 1.09007 * 109.46678 * 60.00003 * 1 2 3 25 25 H 1.09000 * 109.47142 * 55.00010 * 4 2 1 26 26 H 1.09003 * 109.47348 * 174.99898 * 4 2 1 27 27 H 0.97003 * 120.00260 * 180.02562 * 8 7 5 28 28 H 1.08994 * 109.47483 * 305.00390 * 13 2 1 29 29 H 1.09003 * 109.46939 * 185.00042 * 13 2 1 30 30 H 1.09006 * 113.71664 * 22.09029 * 15 14 13 31 31 H 1.08999 * 113.81399 * 250.86555 * 15 14 13 32 32 H 1.08992 * 113.80591 * 222.94553 * 16 15 14 33 33 H 1.08996 * 113.90403 * 91.45242 * 16 15 14 34 34 H 1.09005 * 110.59972 * 248.04424 * 18 17 14 35 35 H 1.09001 * 110.59656 * 10.98944 * 18 17 14 36 36 H 1.09003 * 110.35689 * 142.62741 * 19 18 17 37 37 H 1.09000 * 110.35986 * 264.82327 * 19 18 17 38 38 H 1.09001 * 110.42903 * 280.60380 * 21 20 19 39 39 H 1.08997 * 110.43146 * 158.11205 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9930 -0.4017 3.7283 8 7 2.6761 -1.5188 3.8513 9 14 1.4982 0.5626 5.2497 10 1 0.1713 0.0935 5.7233 11 1 2.5077 0.3532 6.3185 12 1 1.4224 2.0078 4.9167 13 6 2.0400 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.5382 1.2084 -2.6432 16 6 2.5606 0.8180 -4.1343 17 6 2.1880 -0.5853 -3.6600 18 6 3.3573 -1.5573 -3.4584 19 6 2.9178 -2.8214 -4.2358 20 8 1.9688 -2.3433 -5.2153 21 6 1.1786 -1.3420 -4.5319 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.6052 -1.7198 1.2951 26 1 3.1262 -0.7996 1.2057 27 1 2.9233 -1.8417 4.7319 28 1 1.6054 -1.7198 -1.2951 29 1 3.1263 -0.7995 -1.2055 30 1 3.5059 1.1137 -2.1505 31 1 2.0539 2.1652 -2.4476 32 1 3.5485 0.8802 -4.5906 33 1 1.7857 1.3014 -4.7291 34 1 4.2744 -1.1468 -3.8808 35 1 3.4891 -1.7842 -2.4004 36 1 3.7745 -3.2797 -4.7299 37 1 2.4430 -3.5349 -3.5622 38 1 0.4190 -1.8159 -3.9102 39 1 0.7157 -0.6665 -5.2512 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331741051.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:46:57 Heat of formation + Delta-G solvation = -41.033624 kcal Electronic energy + Delta-G solvation = -17828.352492 eV Core-core repulsion = 15156.777793 eV Total energy + Delta-G solvation = -2671.574699 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.14578 -38.76725 -36.91437 -34.38326 -31.67432 -30.81509 -29.31701 -28.61793 -26.34466 -24.38286 -23.96532 -23.40745 -20.78396 -19.45797 -18.50352 -17.64783 -17.08445 -16.59754 -16.38944 -16.27092 -15.70457 -15.48316 -14.81043 -14.37046 -14.32156 -13.79094 -13.35571 -13.26512 -13.03897 -12.80190 -12.74129 -12.59700 -12.46964 -12.23939 -12.15929 -11.89374 -11.75498 -11.46190 -11.36141 -11.06624 -10.83241 -10.73457 -10.54954 -9.69036 -8.19008 -6.28156 1.39415 1.40228 1.51174 2.40776 2.78179 3.03845 3.14543 3.44076 3.58448 3.89685 3.91400 4.04997 4.19393 4.25618 4.27576 4.38599 4.48915 4.64353 4.71538 4.75528 4.80089 4.81045 4.84834 4.91073 4.93756 4.96574 4.99369 5.23316 5.25842 5.37357 5.43298 5.48987 5.54408 5.76596 5.82530 5.86898 6.11275 6.29876 6.87423 7.40259 8.93040 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.041040 B = 0.005196 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.090647 B = 5387.594203 C = 5629.946233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.068 4.068 3 H 0.052 0.948 4 C 0.034 3.966 5 C -0.529 4.529 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.960 3.040 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.263 1.263 13 C 0.039 3.961 14 N -0.468 5.468 15 C -0.001 4.001 16 C -0.114 4.114 17 C 0.021 3.979 18 C -0.173 4.173 19 C 0.048 3.952 20 O -0.392 6.392 21 C 0.070 3.930 22 H 0.033 0.967 23 H 0.038 0.962 24 H 0.064 0.936 25 H -0.012 1.012 26 H -0.013 1.013 27 H 0.262 0.738 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 2.788 -17.042 17.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.004 4.004 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.785 3.215 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.188 1.188 13 C -0.089 4.089 14 N -0.190 5.190 15 C -0.130 4.130 16 C -0.152 4.152 17 C -0.071 4.071 18 C -0.211 4.211 19 C -0.029 4.029 20 O -0.310 6.310 21 C -0.008 4.008 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.007 0.993 26 H 0.005 0.995 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.128 0.872 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.259 2.683 -17.054 17.266 hybrid contribution 0.812 -0.160 1.629 1.827 sum 0.553 2.523 -15.425 15.639 Atomic orbital electron populations 1.21488 0.94922 1.00231 1.00459 1.20927 0.96492 0.98328 0.92938 0.92991 1.19008 0.94080 0.94581 0.92713 1.21620 1.34413 1.08584 0.92090 0.92242 1.25936 0.95206 0.96093 1.02604 1.70095 1.40269 1.22944 1.24294 0.85516 0.78015 0.79304 0.78658 1.19940 1.20841 1.18760 1.22597 0.97806 0.97439 0.91086 1.68316 1.45057 1.05277 1.00365 1.23963 0.96183 0.96272 0.96547 1.23268 1.03409 0.92704 0.95790 1.23329 0.94351 0.96133 0.93247 1.23241 0.98980 0.96387 1.02512 1.23498 0.93014 0.95478 0.90922 1.89126 1.49603 1.56843 1.35465 1.23114 0.92807 0.89765 0.95065 0.94732 0.94268 0.91726 0.99336 0.99491 0.92917 0.92249 0.94037 0.91617 0.88909 0.89331 0.87719 0.88690 0.89930 0.87164 0.92641 0.92640 0.87060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.44 8.89 71.98 0.64 -3.80 16 2 C -0.07 -2.80 2.42 -10.79 -0.03 -2.83 16 3 H 0.05 2.17 7.71 -2.39 -0.02 2.15 16 4 C 0.03 1.78 4.45 29.85 0.13 1.91 16 5 C -0.53 -30.06 8.41 25.60 0.22 -29.84 16 6 H 0.06 3.27 7.06 -2.91 -0.02 3.25 16 7 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 8 N -0.94 -57.23 13.29 21.45 0.28 -56.95 16 9 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 13 C 0.04 1.33 3.03 86.30 0.26 1.59 16 14 N -0.47 -13.11 5.57 -856.34 -4.77 -17.88 16 15 C 0.00 -0.03 7.31 86.30 0.63 0.60 16 16 C -0.11 -2.18 7.55 30.90 0.23 -1.94 16 17 C 0.02 0.48 1.27 3.59 0.00 0.49 16 18 C -0.17 -3.89 6.06 31.33 0.19 -3.70 16 19 C 0.05 1.03 7.66 72.59 0.56 1.59 16 20 O -0.39 -9.76 11.66 -148.98 -1.74 -11.50 16 21 C 0.07 1.61 7.29 72.10 0.53 2.14 16 22 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.04 1.62 6.95 -2.39 -0.02 1.61 16 24 H 0.06 2.21 7.75 -2.38 -0.02 2.19 16 25 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 27 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 28 H 0.06 2.12 8.13 -2.39 -0.02 2.10 16 29 H 0.04 1.43 5.77 -2.39 -0.01 1.42 16 30 H 0.07 1.66 7.65 -2.38 -0.02 1.64 16 31 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.09 1.43 7.89 -2.39 -0.02 1.41 16 33 H 0.10 1.73 7.97 -2.39 -0.02 1.71 16 34 H 0.09 1.83 7.79 -2.38 -0.02 1.81 16 35 H 0.08 2.14 5.02 -2.39 -0.01 2.13 16 36 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.11 2.16 7.85 -2.39 -0.02 2.14 16 Total: -1.00 -64.14 304.02 0.63 -63.51 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.00 Total: 9.62 kcal Atomic # 6 Polarization: -37.22 SS G_CDS: 3.83 Total: -33.40 kcal Atomic # 7 Polarization: -70.34 SS G_CDS: -4.49 Total: -74.83 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: -1.74 Total: -11.50 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -64.14 0.63 -63.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331741051.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.480 kcal (2) G-P(sol) polarization free energy of solvation -64.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds