Wall clock time and date at job start Mon Mar 30 2020 17:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46808 * 2 1 4 4 N 1.46498 * 109.47187 * 239.99782 * 2 1 3 5 5 C 1.34774 * 120.00392 * 84.99819 * 4 2 1 6 6 O 1.21692 * 119.99480 * 0.02562 * 5 4 2 7 7 C 1.46369 * 120.00262 * 179.97438 * 5 4 2 8 8 H 1.08000 * 120.00458 * 0.02562 * 7 5 4 9 9 C 1.40053 * 119.99935 * 180.02562 * 7 5 4 10 10 N 1.30676 * 119.99838 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 120.00034 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47139 * 89.99689 * 11 9 7 13 13 H 1.48497 * 109.47073 * 209.99529 * 11 9 7 14 14 H 1.48502 * 109.47074 * 329.99842 * 11 9 7 15 15 C 1.52999 * 109.46775 * 119.99818 * 2 1 3 16 16 C 1.50470 * 108.87649 * 300.00006 * 15 2 1 17 17 C 1.54246 * 108.51998 * 214.93181 * 16 15 2 18 18 C 1.45537 * 112.40731 * 280.01038 * 17 16 15 19 19 C 1.54242 * 112.40484 * 61.93498 * 18 17 16 20 20 C 1.50473 * 108.52431 * 280.01487 * 19 18 17 21 21 C 1.54065 * 112.49668 * 94.15076 * 20 19 18 22 22 H 1.09009 * 109.47202 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47489 * 300.00125 * 1 2 3 24 24 H 1.09006 * 109.47002 * 60.00669 * 1 2 3 25 25 H 0.97006 * 120.00071 * 265.00347 * 4 2 1 26 26 H 0.96999 * 119.99633 * 180.02562 * 10 9 7 27 27 H 1.09001 * 108.76637 * 181.49168 * 15 2 1 28 28 H 1.09003 * 109.63195 * 95.22097 * 16 15 2 29 29 H 1.09001 * 109.62960 * 334.64140 * 16 15 2 30 30 H 1.09001 * 108.89247 * 40.76541 * 17 16 15 31 31 H 1.08997 * 108.89409 * 159.25841 * 17 16 15 32 32 H 1.09000 * 108.89458 * 182.68905 * 18 17 16 33 33 H 1.08995 * 108.89787 * 301.28165 * 18 17 16 34 34 H 1.09006 * 109.62552 * 39.72561 * 19 18 17 35 35 H 1.08998 * 109.62937 * 160.10900 * 19 18 17 36 36 H 1.08999 * 108.87754 * 214.92438 * 20 19 18 37 37 H 1.08996 * 108.87890 * 333.37233 * 20 19 18 38 38 H 1.09005 * 108.81720 * 79.14584 * 21 20 19 39 39 H 1.09002 * 108.81354 * 197.42222 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8581 1.1624 -2.4117 7 6 2.6355 -0.7084 -3.5521 8 1 2.8924 -1.7562 -3.5036 9 6 2.7698 -0.0096 -4.7584 10 7 2.4585 1.2582 -4.8172 11 14 3.3925 -0.8903 -6.2835 12 1 2.2425 -1.4613 -7.0296 13 1 4.1157 0.0738 -7.1511 14 1 4.3142 -1.9833 -5.8823 15 6 2.0399 -0.7212 1.2493 16 6 1.5310 -0.0015 2.4687 17 6 2.6101 -0.0771 3.5683 18 6 2.6045 -1.3553 4.2642 19 6 2.9137 -2.5381 3.3236 20 6 1.6600 -2.8895 2.5694 21 6 1.5817 -2.1913 1.1982 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 2.2490 -1.6319 -1.1525 26 1 2.5511 1.7420 -5.6528 27 1 3.1295 -0.6913 1.2513 28 1 0.6160 -0.4784 2.8202 29 1 1.3321 1.0415 2.2220 30 1 3.5891 0.0726 3.1129 31 1 2.4336 0.7192 4.2913 32 1 3.3527 -1.3292 5.0563 33 1 1.6226 -1.5094 4.7115 34 1 3.6960 -2.2519 2.6206 35 1 3.2441 -3.3954 3.9100 36 1 1.6303 -3.9685 2.4178 37 1 0.7959 -2.5950 3.1649 38 1 2.2121 -2.7317 0.4920 39 1 0.5513 -2.2261 0.8443 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466757650.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:47:27 Heat of formation + Delta-G solvation = -93.953567 kcal Electronic energy + Delta-G solvation = -17858.009865 eV Core-core repulsion = 15184.140385 eV Total energy + Delta-G solvation = -2673.869480 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.68725 -38.99620 -36.25187 -34.57577 -33.14865 -32.75352 -30.10880 -28.19293 -26.00920 -25.71931 -23.09967 -21.49127 -21.26436 -19.49970 -19.09662 -17.49922 -16.94345 -16.27643 -15.89105 -15.62660 -15.40903 -14.89682 -14.72505 -14.38404 -14.01746 -13.70088 -13.47418 -13.28360 -13.15104 -12.78923 -12.72171 -12.59336 -12.55087 -12.14947 -12.02039 -11.58464 -11.41924 -11.36893 -11.10706 -10.99526 -10.92389 -10.89324 -9.81437 -9.39656 -8.27685 -6.84478 1.39089 1.41034 1.56061 2.24896 2.49304 3.18183 3.61966 3.74572 3.77620 3.89691 4.21517 4.29195 4.32692 4.41022 4.50046 4.54023 4.57517 4.67120 4.75183 4.95087 4.95522 5.06922 5.15025 5.19902 5.25388 5.31914 5.32834 5.35031 5.40176 5.44059 5.47379 5.54448 5.64787 5.68723 5.90816 6.27073 6.38484 6.87779 7.60599 8.52927 8.70256 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.039645 B = 0.005469 C = 0.005167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.102999 B = 5118.770932 C = 5417.770006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.151 3.849 3 H 0.033 0.967 4 N -0.750 5.750 5 C 0.538 3.462 6 O -0.633 6.633 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.028 3.972 10 N -0.824 5.824 11 Si 0.998 3.002 12 H -0.261 1.261 13 H -0.273 1.273 14 H -0.249 1.249 15 C -0.074 4.074 16 C -0.106 4.106 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.120 4.120 20 C -0.110 4.110 21 C -0.114 4.114 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.014 0.986 25 H 0.391 0.609 26 H 0.273 0.727 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.398 -9.406 15.670 18.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.045 3.955 3 H 0.051 0.949 4 N -0.404 5.404 5 C 0.342 3.658 6 O -0.520 6.520 7 C -0.613 4.613 8 H 0.103 0.897 9 C -0.186 4.186 10 N -0.453 5.453 11 Si 0.817 3.183 12 H -0.186 1.186 13 H -0.198 1.198 14 H -0.172 1.172 15 C -0.093 4.093 16 C -0.144 4.144 17 C -0.153 4.153 18 C -0.151 4.151 19 C -0.157 4.157 20 C -0.147 4.147 21 C -0.152 4.152 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.034 0.966 25 H 0.226 0.774 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.623 -8.390 15.565 17.693 hybrid contribution 0.328 -0.150 -1.042 1.103 sum -0.295 -8.540 14.523 16.850 Atomic orbital electron populations 1.22159 0.96211 1.01921 1.00567 1.20831 0.93774 0.95323 0.85539 0.94883 1.45936 1.71896 1.13234 1.09302 1.18590 0.77533 0.86056 0.83638 1.90541 1.57036 1.18616 1.85836 1.21452 1.47398 0.98169 0.94307 0.89714 1.26973 0.92809 0.95118 1.03724 1.70202 1.36861 1.10589 1.27662 0.85029 0.79033 0.78507 0.75757 1.18592 1.19778 1.17249 1.21084 0.99772 0.95472 0.92966 1.21362 0.99382 0.99636 0.94022 1.20466 0.98340 0.98692 0.97811 1.20467 1.02336 0.94202 0.98074 1.21365 0.97732 0.98352 0.98268 1.21282 0.98581 0.99835 0.95009 1.22022 1.01491 0.93580 0.98083 0.91218 0.90323 0.96625 0.77445 0.91673 0.92421 0.90139 0.92745 0.93382 0.91451 0.91682 0.91337 0.92962 0.90934 0.91622 0.91328 0.92977 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 8.98 71.98 0.65 -4.82 16 2 C 0.15 5.97 2.15 44.99 0.10 6.07 16 3 H 0.03 1.56 7.51 -2.39 -0.02 1.55 16 4 N -0.75 -34.73 4.98 -446.83 -2.23 -36.96 16 5 C 0.54 32.18 7.71 86.36 0.67 32.85 16 6 O -0.63 -43.67 14.68 -4.32 -0.06 -43.73 16 7 C -0.58 -33.61 9.54 24.83 0.24 -33.37 16 8 H 0.08 4.44 7.85 -2.91 -0.02 4.41 16 9 C 0.03 1.63 5.50 85.30 0.47 2.10 16 10 N -0.82 -51.71 11.83 21.84 0.26 -51.45 16 11 Si 1.00 41.85 29.56 68.60 2.03 43.88 16 12 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 13 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 14 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 15 C -0.07 -2.12 1.68 -11.25 -0.02 -2.14 16 16 C -0.11 -2.51 3.96 30.20 0.12 -2.39 16 17 C -0.12 -2.32 5.26 28.74 0.15 -2.16 16 18 C -0.11 -1.88 5.26 28.74 0.15 -1.73 16 19 C -0.12 -2.13 5.61 30.20 0.17 -1.96 16 20 C -0.11 -2.03 5.31 30.14 0.16 -1.87 16 21 C -0.11 -2.79 4.57 31.31 0.14 -2.64 16 22 H 0.07 2.24 6.12 -2.38 -0.01 2.22 16 23 H 0.08 2.35 7.01 -2.39 -0.02 2.34 16 24 H 0.01 0.67 8.14 -2.38 -0.02 0.65 16 25 H 0.39 15.87 6.96 -92.70 -0.65 15.23 16 26 H 0.27 15.53 8.29 -92.71 -0.77 14.76 16 27 H 0.06 1.79 6.63 -2.39 -0.02 1.77 16 28 H 0.08 1.66 6.98 -2.39 -0.02 1.64 16 29 H 0.05 1.42 7.39 -2.39 -0.02 1.40 16 30 H 0.05 1.08 7.47 -2.39 -0.02 1.06 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.07 1.02 7.46 -2.39 -0.02 1.00 16 34 H 0.05 1.09 6.98 -2.38 -0.02 1.08 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.15 6.63 -2.39 -0.02 1.14 16 38 H 0.05 1.34 7.07 -2.38 -0.02 1.32 16 39 H 0.06 1.62 5.75 -2.39 -0.01 1.61 16 Total: -1.00 -75.33 294.73 3.38 -71.95 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.39 Total: 28.38 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 2.99 Total: -12.08 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -1.97 Total: -88.41 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.06 Total: -43.73 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -75.33 3.38 -71.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466757650.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.999 kcal (2) G-P(sol) polarization free energy of solvation -75.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds