Wall clock time and date at job start Mon Mar 30 2020 17:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47322 * 2 1 4 4 C 1.53004 * 109.46842 * 120.00198 * 2 1 3 5 5 C 1.52998 * 109.46822 * 174.99771 * 4 2 1 6 6 H 1.08999 * 109.50958 * 55.07772 * 5 4 2 7 7 C 1.53126 * 109.50673 * 294.99891 * 5 4 2 8 8 C 1.53109 * 109.16214 * 182.36593 * 7 5 4 9 9 C 1.53044 * 109.28150 * 57.65538 * 8 7 5 10 10 N 1.46846 * 109.51968 * 300.81833 * 9 8 7 11 11 C 1.46901 * 110.99738 * 185.83487 * 10 9 8 12 12 C 1.53000 * 109.46769 * 66.05101 * 11 10 9 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 10 14 14 H 1.08001 * 119.99776 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00001 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99923 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 120.00006 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.46794 * 89.99626 * 17 15 13 19 19 H 1.48502 * 109.47140 * 209.99610 * 17 15 13 20 20 H 1.48501 * 109.46982 * 329.99723 * 17 15 13 21 21 C 1.46854 * 111.19765 * 61.74063 * 10 9 8 22 22 H 1.09007 * 109.46959 * 300.00170 * 1 2 3 23 23 H 1.08997 * 109.47001 * 59.99301 * 1 2 3 24 24 H 1.08997 * 109.47336 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46863 * 239.99717 * 2 1 3 26 26 H 1.09003 * 109.47463 * 180.02562 * 3 2 1 27 27 H 1.08997 * 109.47653 * 300.00299 * 3 2 1 28 28 H 1.09007 * 109.47243 * 60.00003 * 3 2 1 29 29 H 1.08992 * 109.47270 * 55.00239 * 4 2 1 30 30 H 1.08994 * 109.46944 * 294.99224 * 4 2 1 31 31 H 1.08999 * 109.51776 * 62.45488 * 7 5 4 32 32 H 1.09003 * 109.56860 * 302.30298 * 7 5 4 33 33 H 1.09001 * 109.50885 * 297.71081 * 8 7 5 34 34 H 1.09008 * 109.53797 * 177.61369 * 8 7 5 35 35 H 1.08999 * 109.46106 * 180.80329 * 9 8 7 36 36 H 1.08998 * 109.46047 * 60.83217 * 9 8 7 37 37 H 1.09002 * 109.47401 * 306.04808 * 11 10 9 38 38 H 1.09001 * 109.46874 * 186.04821 * 11 10 9 39 39 H 1.09001 * 109.47194 * 299.99524 * 12 11 10 40 40 H 1.08992 * 109.47399 * 59.99697 * 12 11 10 41 41 H 0.97000 * 119.99684 * 179.97438 * 16 15 13 42 42 H 1.09005 * 109.46009 * 58.26928 * 21 10 9 43 43 H 1.08998 * 109.46194 * 178.23807 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8312 1.1880 6 1 3.9961 0.1609 1.0541 7 6 3.9661 -1.7259 0.0119 8 6 5.4894 -1.8783 -0.0067 9 6 5.9554 -2.4605 1.3298 10 7 5.5482 -1.5680 2.4225 11 6 6.0975 -2.0233 3.7066 12 6 7.6221 -1.8971 3.6825 13 6 8.1855 -2.3636 5.0001 14 1 7.5225 -2.7154 5.7767 15 6 9.5475 -2.3424 5.2137 16 7 10.0392 -2.7490 6.3636 17 14 10.6943 -1.7346 3.8701 18 1 10.8986 -0.2712 4.0184 19 1 12.0011 -2.4308 3.9824 20 1 10.0946 -2.0186 2.5416 21 6 4.0865 -1.4436 2.4898 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6054 -1.7198 1.2951 30 1 1.7517 -0.1583 2.1369 31 1 3.6339 -1.2713 -0.9214 32 1 3.5032 -2.7063 0.1245 33 1 5.9510 -0.9028 -0.1594 34 1 5.7789 -2.5485 -0.8162 35 1 7.0411 -2.5570 1.3251 36 1 5.5043 -3.4420 1.4754 37 1 5.8216 -3.0650 3.8709 38 1 5.6947 -1.4094 4.5122 39 1 8.0248 -2.5110 2.8769 40 1 7.8979 -0.8555 3.5182 41 1 10.9974 -2.7344 6.5137 42 1 3.6442 -2.4300 2.6298 43 1 3.8148 -0.8016 3.3276 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119325257.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:12 Heat of formation + Delta-G solvation = -54.321631 kcal Electronic energy + Delta-G solvation = -17699.381627 eV Core-core repulsion = 15163.063812 eV Total energy + Delta-G solvation = -2536.317815 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.37715 -37.65976 -35.54885 -34.18545 -32.23980 -31.52450 -27.96180 -27.11245 -26.94075 -24.23714 -23.29495 -21.69558 -20.83529 -20.19234 -19.03785 -16.75732 -16.45860 -16.20512 -15.95154 -15.48850 -15.23973 -14.83742 -14.59850 -14.52611 -14.22509 -14.13726 -13.63736 -13.23989 -13.03449 -12.83176 -12.80953 -12.55154 -12.19298 -12.09361 -11.97058 -11.82134 -11.70961 -11.65080 -11.55331 -11.36285 -11.17734 -10.98061 -10.82215 -10.73873 -9.20234 -8.31549 -6.35922 1.35737 1.36835 1.49827 2.35356 3.00571 3.03859 3.77504 3.88253 3.95873 4.13071 4.16239 4.21830 4.33403 4.46833 4.48154 4.56810 4.59963 4.68163 4.75658 4.84447 4.86697 4.88998 4.92404 4.97491 5.03264 5.08484 5.10168 5.16006 5.21477 5.24681 5.29376 5.36185 5.40374 5.46619 5.48539 5.60413 5.63164 5.67039 6.15252 6.27481 6.33755 6.71527 7.28870 8.85259 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.043798 B = 0.004538 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.142933 B = 6169.256077 C = 6356.505910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.103 4.103 5 C -0.078 4.078 6 H 0.075 0.925 7 C -0.109 4.109 8 C -0.111 4.111 9 C 0.049 3.951 10 N -0.547 5.547 11 C 0.082 3.918 12 C 0.002 3.998 13 C -0.535 4.535 14 H 0.031 0.969 15 C 0.007 3.993 16 N -0.950 5.950 17 Si 0.953 3.047 18 H -0.266 1.266 19 H -0.281 1.281 20 H -0.249 1.249 21 C 0.059 3.941 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.025 0.975 37 H 0.014 0.986 38 H 0.059 0.941 39 H 0.019 0.981 40 H 0.019 0.981 41 H 0.267 0.733 42 H 0.025 0.975 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.318 5.431 -17.526 25.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.141 4.141 5 C -0.097 4.097 6 H 0.093 0.907 7 C -0.146 4.146 8 C -0.149 4.149 9 C -0.079 4.079 10 N -0.272 5.272 11 C -0.045 4.045 12 C -0.036 4.036 13 C -0.573 4.573 14 H 0.049 0.951 15 C -0.190 4.190 16 N -0.591 5.591 17 Si 0.777 3.223 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.173 1.173 21 C -0.069 4.069 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.043 0.957 37 H 0.032 0.968 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.984 5.864 -17.522 25.097 hybrid contribution 0.579 -0.855 0.632 1.210 sum -16.406 5.010 -16.890 24.073 Atomic orbital electron populations 1.21832 0.94812 1.01804 1.01881 1.21118 0.95869 0.96219 0.98041 1.21892 1.01045 0.96012 1.01702 1.21604 0.93544 1.00606 0.98376 1.21196 0.95609 0.99619 0.93290 0.90673 1.21641 0.94763 0.99559 0.98648 1.21579 0.96715 1.01548 0.95046 1.22181 1.00189 0.93463 0.92071 1.61965 1.10793 1.50360 1.04057 1.21801 0.95806 0.96609 0.90314 1.19426 0.92970 0.96385 0.94802 1.21421 0.92661 1.42983 1.00261 0.95071 1.25986 1.00144 0.94854 0.98055 1.70063 1.13654 1.49459 1.25901 0.85610 0.77590 0.78938 0.80206 1.19138 1.20696 1.17270 1.22192 0.86498 0.99027 0.99153 0.92921 0.92178 0.92605 0.90669 0.92908 0.92251 0.93050 0.91961 0.92162 0.89948 0.92320 0.91674 0.90177 0.92101 0.95697 0.96782 0.92207 0.96278 0.96264 0.92378 0.95702 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.19 71.98 0.66 -1.23 16 2 C -0.09 -1.39 2.78 -10.79 -0.03 -1.42 16 3 C -0.15 -2.27 8.95 71.98 0.64 -1.62 16 4 C -0.10 -1.83 4.16 30.60 0.13 -1.70 16 5 C -0.08 -1.72 2.21 -10.74 -0.02 -1.74 16 6 H 0.07 1.77 6.35 -2.39 -0.02 1.75 16 7 C -0.11 -2.18 4.98 30.67 0.15 -2.03 16 8 C -0.11 -2.65 6.09 30.65 0.19 -2.46 16 9 C 0.05 1.55 5.29 86.33 0.46 2.00 16 10 N -0.55 -19.14 4.66 -896.33 -4.17 -23.31 16 11 C 0.08 3.51 4.90 86.30 0.42 3.93 16 12 C 0.00 0.09 3.98 29.85 0.12 0.21 16 13 C -0.53 -32.01 9.66 25.60 0.25 -31.76 16 14 H 0.03 2.04 7.99 -2.91 -0.02 2.01 16 15 C 0.01 0.39 5.47 84.65 0.46 0.85 16 16 N -0.95 -60.79 13.96 21.45 0.30 -60.49 16 17 Si 0.95 45.64 27.47 68.60 1.88 47.53 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 21 C 0.06 1.68 4.74 86.32 0.41 2.09 16 22 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.08 1.07 6.40 -2.39 -0.02 1.05 16 26 H 0.05 0.89 6.47 -2.39 -0.02 0.87 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.35 6.59 -2.39 -0.02 1.33 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.08 1.61 8.14 -2.38 -0.02 1.60 16 35 H 0.06 2.15 6.22 -2.39 -0.01 2.13 16 36 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.01 0.61 8.12 -2.39 -0.02 0.59 16 38 H 0.06 2.57 7.98 -2.39 -0.02 2.55 16 39 H 0.02 0.93 5.49 -2.39 -0.01 0.92 16 40 H 0.02 0.95 7.57 -2.39 -0.02 0.93 16 41 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 42 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.07 1.92 8.01 -2.39 -0.02 1.90 16 Total: -1.00 -65.67 322.46 2.72 -62.94 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 0.87 Total: 8.20 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 3.84 Total: -34.87 kcal Atomic # 7 Polarization: -79.93 SS G_CDS: -3.87 Total: -83.80 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.53 kcal Total: -65.67 2.72 -62.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119325257.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.622 kcal (2) G-P(sol) polarization free energy of solvation -65.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds