Wall clock time and date at job start Mon Mar 30 2020 17:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47527 * 2 1 4 4 C 1.53004 * 109.46989 * 239.99561 * 2 1 3 5 5 C 1.50697 * 109.46812 * 60.00856 * 4 2 1 6 6 H 1.08003 * 120.00063 * 359.97438 * 5 4 2 7 7 C 1.37882 * 120.00212 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99419 * 359.97438 * 7 5 4 9 9 Si 1.86791 * 120.00129 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47214 * 60.00238 * 9 7 5 11 11 H 1.48505 * 109.47079 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47632 * 299.99919 * 9 7 5 13 13 C 1.53008 * 109.46924 * 120.00294 * 2 1 3 14 14 N 1.46902 * 109.46622 * 299.99642 * 13 2 1 15 15 C 1.46906 * 110.99573 * 179.97438 * 14 13 2 16 16 C 1.52998 * 109.47020 * 179.97438 * 15 14 13 17 17 C 1.54260 * 110.03281 * 292.91174 * 16 15 14 18 18 C 1.54969 * 104.16095 * 217.13684 * 17 16 15 19 19 C 1.54895 * 102.77590 * 37.88152 * 18 17 16 20 20 C 1.53869 * 110.03465 * 175.68880 * 16 15 14 21 21 H 1.09000 * 109.46982 * 300.00666 * 1 2 3 22 22 H 1.09001 * 109.46986 * 59.99735 * 1 2 3 23 23 H 1.08995 * 109.47521 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46981 * 179.97438 * 3 2 1 25 25 H 1.08991 * 109.47245 * 299.99592 * 3 2 1 26 26 H 1.08999 * 109.46856 * 59.99981 * 3 2 1 27 27 H 1.09006 * 109.46807 * 180.02562 * 4 2 1 28 28 H 1.08995 * 109.47458 * 300.00613 * 4 2 1 29 29 H 0.96997 * 119.99459 * 180.02562 * 8 7 5 30 30 H 1.08990 * 109.46924 * 179.97438 * 13 2 1 31 31 H 1.09004 * 109.46978 * 59.99658 * 13 2 1 32 32 H 1.00896 * 111.00219 * 303.95583 * 14 13 2 33 33 H 1.09002 * 109.46991 * 299.99841 * 15 14 13 34 34 H 1.09000 * 109.47202 * 60.00133 * 15 14 13 35 35 H 1.09008 * 110.01621 * 54.30216 * 16 15 14 36 36 H 1.09002 * 110.48579 * 335.77915 * 17 16 15 37 37 H 1.09002 * 110.49291 * 98.42746 * 17 16 15 38 38 H 1.09007 * 110.71801 * 279.57243 * 18 17 16 39 39 H 1.08998 * 110.92780 * 156.29400 * 18 17 16 40 40 H 1.09000 * 110.48759 * 203.40245 * 19 18 17 41 41 H 1.09000 * 110.59322 * 80.82239 * 19 18 17 42 42 H 1.09001 * 110.03406 * 238.57258 * 20 16 15 43 43 H 1.09000 * 110.03035 * 359.95273 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8671 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 2.6280 -1.5505 -3.8526 9 14 1.2481 0.3986 -5.2571 10 1 1.7423 1.7990 -5.2570 11 1 1.7442 -0.3007 -6.4697 12 1 -0.2369 0.3977 -5.2573 13 6 2.0400 -0.7214 1.2493 14 7 1.5503 -0.0288 2.4487 15 6 2.0208 -0.6953 3.6704 16 6 1.4923 0.0533 4.8956 17 6 2.1398 1.4508 4.9808 18 6 2.3496 1.6794 6.4991 19 6 2.7618 0.2741 7.0034 20 6 1.8871 -0.6945 6.1810 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1301 1.4423 0.0005 25 1 1.6769 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 3.1300 -0.7218 -1.2490 28 1 1.6766 -1.7490 -1.2493 29 1 2.8629 -1.8814 -4.7336 30 1 3.1299 -0.7218 1.2491 31 1 1.6765 -1.7490 1.2492 32 1 1.8197 0.9435 2.4402 33 1 1.6568 -1.7227 3.6869 34 1 3.1106 -0.6956 3.6874 35 1 0.4079 0.1472 4.8364 36 1 3.0962 1.4607 4.4581 37 1 1.4712 2.2069 4.5692 38 1 1.4223 2.0029 6.9722 39 1 3.1452 2.4027 6.6777 40 1 2.5473 0.1724 8.0672 41 1 3.8188 0.0920 6.8093 42 1 0.9944 -0.9628 6.7461 43 1 2.4545 -1.5913 5.9320 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126648267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:49:31 Heat of formation + Delta-G solvation = -58.475625 kcal Electronic energy + Delta-G solvation = -17579.814353 eV Core-core repulsion = 15043.316407 eV Total energy + Delta-G solvation = -2536.497946 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.77134 -38.65330 -35.53797 -34.11170 -30.57684 -29.52527 -28.85456 -27.89836 -26.75197 -24.99949 -23.56628 -21.44038 -20.51355 -19.43395 -18.33177 -17.23444 -16.57503 -16.33105 -16.02303 -15.45963 -15.21541 -14.74928 -14.22446 -14.15242 -13.94172 -13.89601 -13.61899 -13.18612 -12.73485 -12.72438 -12.43653 -12.25844 -12.18963 -12.02488 -11.93310 -11.86200 -11.79194 -11.53868 -11.46587 -11.39579 -11.23625 -10.86109 -10.69045 -10.49988 -9.28371 -8.13829 -6.21193 1.41152 1.43682 1.50962 2.44113 3.19883 3.27645 3.74470 3.80538 3.94642 4.13256 4.20943 4.37546 4.45053 4.48362 4.60462 4.65231 4.73433 4.77125 4.81317 4.88185 4.92805 4.96108 4.98493 5.07506 5.11666 5.14890 5.20843 5.21307 5.28624 5.40387 5.50685 5.51037 5.53229 5.56560 5.58046 5.65849 5.86879 5.92429 6.12141 6.37069 6.56250 6.93700 7.46145 8.98501 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.057213 B = 0.004085 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.281606 B = 6853.383180 C = 7003.085032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.056 4.056 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.516 4.516 6 H 0.067 0.933 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.958 3.042 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.081 3.919 14 N -0.683 5.683 15 C 0.066 3.934 16 C -0.086 4.086 17 C -0.123 4.123 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.119 4.119 21 H 0.067 0.933 22 H 0.039 0.961 23 H 0.029 0.971 24 H 0.035 0.965 25 H 0.048 0.952 26 H 0.067 0.933 27 H -0.017 1.017 28 H -0.017 1.017 29 H 0.260 0.740 30 H 0.014 0.986 31 H 0.054 0.946 32 H 0.343 0.657 33 H 0.063 0.937 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.345 5.678 20.310 21.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.056 4.056 3 C -0.179 4.179 4 C 0.002 3.998 5 C -0.554 4.554 6 H 0.085 0.915 7 C -0.201 4.201 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.192 1.192 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.048 4.048 14 N -0.315 5.315 15 C -0.063 4.063 16 C -0.104 4.104 17 C -0.161 4.161 18 C -0.160 4.160 19 C -0.161 4.161 20 C -0.158 4.158 21 H 0.086 0.914 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.085 0.915 27 H 0.001 0.999 28 H 0.001 0.999 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.073 0.927 32 H 0.163 0.837 33 H 0.081 0.919 34 H 0.041 0.959 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.876 5.242 20.189 20.942 hybrid contribution 0.993 0.032 -1.348 1.674 sum -0.883 5.274 18.841 19.585 Atomic orbital electron populations 1.21495 0.94240 1.00065 1.00549 1.20506 0.96367 0.95635 0.93142 1.21679 0.99401 0.95611 1.01219 1.19004 0.93895 0.94079 0.92776 1.21598 1.30321 1.12032 0.91442 0.91531 1.25942 0.95672 0.95902 1.02632 1.70110 1.38794 1.24987 1.24117 0.85610 0.78943 0.78794 0.78379 1.19201 1.21343 1.19290 1.21817 0.95631 0.97534 0.89837 1.60525 1.63520 1.06610 1.00849 1.22122 0.96567 0.98242 0.89419 1.21750 1.00535 0.94926 0.93236 1.22465 1.00110 0.96350 0.97176 1.22500 1.01575 0.97066 0.94817 1.22360 0.99364 0.94680 0.99715 1.22176 1.00045 0.98362 0.95176 0.91378 0.94186 0.95181 0.94546 0.93305 0.91460 0.99878 0.99859 0.93148 0.96759 0.92721 0.83708 0.91873 0.95870 0.90725 0.92549 0.91388 0.91024 0.91184 0.90770 0.92006 0.91111 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.13 8.06 71.98 0.58 -3.55 16 2 C -0.06 -2.29 0.60 -52.18 -0.03 -2.32 16 3 C -0.12 -4.48 7.89 71.98 0.57 -3.92 16 4 C 0.04 2.12 4.04 29.85 0.12 2.24 16 5 C -0.52 -28.94 7.65 25.60 0.20 -28.75 16 6 H 0.07 3.56 5.68 -2.91 -0.02 3.55 16 7 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 8 N -0.94 -58.09 13.29 21.45 0.28 -57.81 16 9 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.08 2.89 4.65 86.31 0.40 3.29 16 14 N -0.68 -19.43 5.71 -513.86 -2.94 -22.36 16 15 C 0.07 1.59 4.80 86.30 0.41 2.01 16 16 C -0.09 -1.67 3.15 -10.07 -0.03 -1.71 16 17 C -0.12 -2.21 5.54 31.69 0.18 -2.04 16 18 C -0.12 -1.80 6.91 31.91 0.22 -1.58 16 19 C -0.12 -1.79 6.83 31.67 0.22 -1.58 16 20 C -0.12 -1.97 6.46 31.32 0.20 -1.77 16 21 H 0.07 2.29 7.60 -2.39 -0.02 2.27 16 22 H 0.04 1.65 6.62 -2.39 -0.02 1.63 16 23 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 24 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 26 H 0.07 2.01 6.57 -2.39 -0.02 1.99 16 27 H -0.02 -1.00 8.14 -2.38 -0.02 -1.02 16 28 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 29 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.34 9.12 5.97 -89.70 -0.54 8.59 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.02 0.57 8.02 -2.39 -0.02 0.56 16 35 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.06 1.09 7.77 -2.39 -0.02 1.07 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.06 1.05 7.67 -2.39 -0.02 1.03 16 Total: -1.00 -62.23 326.72 3.27 -58.96 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.40 Total: 13.88 kcal Atomic # 6 Polarization: -42.96 SS G_CDS: 3.49 Total: -39.47 kcal Atomic # 7 Polarization: -77.52 SS G_CDS: -2.65 Total: -80.17 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -62.23 3.27 -58.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126648267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.481 kcal (2) G-P(sol) polarization free energy of solvation -62.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds