Wall clock time and date at job start Mon Mar 30 2020 17:49:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47033 * 2 1 4 4 C 1.53003 * 109.47096 * 240.00158 * 2 1 3 5 5 C 1.50704 * 109.47153 * 59.99740 * 4 2 1 6 6 H 1.07997 * 119.99780 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99793 * 180.02562 * 5 4 2 8 8 N 1.31521 * 120.00052 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00014 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47121 * 60.00049 * 9 7 5 11 11 H 1.48506 * 109.47165 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47240 * 300.00130 * 9 7 5 13 13 C 1.52997 * 109.47312 * 120.00120 * 2 1 3 14 14 N 1.46904 * 109.46950 * 300.00123 * 13 2 1 15 15 C 1.46899 * 111.00029 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47254 * 179.97438 * 15 14 13 17 17 C 1.52992 * 109.47482 * 179.97438 * 16 15 14 18 18 C 1.53778 * 113.61727 * 274.13766 * 17 16 15 19 19 C 1.53956 * 87.02468 * 220.04570 * 18 17 16 20 20 C 1.53784 * 113.61658 * 176.52792 * 17 16 15 21 21 H 1.09002 * 109.47029 * 300.00286 * 1 2 3 22 22 H 1.09000 * 109.47152 * 60.00059 * 1 2 3 23 23 H 1.08993 * 109.47356 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46874 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.47103 * 299.99971 * 3 2 1 26 26 H 1.09002 * 109.47446 * 59.99970 * 3 2 1 27 27 H 1.08995 * 109.47051 * 179.97438 * 4 2 1 28 28 H 1.09003 * 109.46901 * 300.00144 * 4 2 1 29 29 H 0.97005 * 119.99618 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47319 * 180.02562 * 13 2 1 31 31 H 1.09003 * 109.47435 * 59.99376 * 13 2 1 32 32 H 1.00908 * 110.99583 * 303.94989 * 14 13 2 33 33 H 1.09002 * 109.47043 * 299.99792 * 15 14 13 34 34 H 1.09001 * 109.47354 * 59.99854 * 15 14 13 35 35 H 1.09002 * 109.47153 * 300.00004 * 16 15 14 36 36 H 1.08998 * 109.47533 * 59.99633 * 16 15 14 37 37 H 1.09000 * 112.84915 * 45.33452 * 17 16 15 38 38 H 1.08996 * 113.61184 * 334.56845 * 18 17 16 39 39 H 1.09000 * 113.61578 * 105.46835 * 18 17 16 40 40 H 1.09002 * 113.53647 * 270.81670 * 19 18 17 41 41 H 1.08996 * 113.66740 * 139.92974 * 19 18 17 42 42 H 1.08998 * 113.61407 * 254.52625 * 20 17 16 43 43 H 1.08996 * 113.61156 * 25.35491 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4798 6 1 0.9164 0.8670 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 2.6256 -1.5521 -3.8526 9 14 1.2470 0.3979 -5.2572 10 1 1.7419 1.7981 -5.2577 11 1 1.7421 -0.3021 -6.4697 12 1 -0.2380 0.3979 -5.2566 13 6 2.0400 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4487 15 6 2.0219 -0.6945 3.6703 16 6 1.4933 0.0540 4.8955 17 6 1.9839 -0.6397 6.1678 18 6 1.0825 -1.7990 6.6241 19 6 1.3112 -1.3043 8.0639 20 6 1.5763 0.0856 7.4612 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 3.1300 1.4424 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6766 1.9564 0.8900 27 1 3.1300 -0.7208 -1.2495 28 1 1.6766 -1.7489 -1.2493 29 1 2.8599 -1.8834 -4.7337 30 1 3.1300 -0.7209 1.2494 31 1 1.6767 -1.7489 1.2493 32 1 1.8198 0.9436 2.4401 33 1 1.6588 -1.7221 3.6873 34 1 3.1118 -0.6939 3.6869 35 1 1.8568 1.0815 4.8783 36 1 0.4035 0.0539 4.8792 37 1 3.0418 -0.8989 6.1275 38 1 0.0493 -1.7065 6.2895 39 1 1.5054 -2.7843 6.4277 40 1 2.1850 -1.7465 8.5425 41 1 0.4186 -1.3465 8.6880 42 1 2.3972 0.6195 7.9397 43 1 0.6791 0.6954 7.3556 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130332096.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:49:38 Heat of formation + Delta-G solvation = -31.066276 kcal Electronic energy + Delta-G solvation = -17227.836560 eV Core-core repulsion = 14692.527173 eV Total energy + Delta-G solvation = -2535.309387 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -39.90647 -39.07219 -36.04836 -34.31227 -31.39863 -28.92415 -27.89434 -26.98792 -26.44132 -25.27784 -23.71372 -22.32884 -20.21201 -19.48851 -18.33228 -16.97116 -16.63680 -16.26005 -15.96223 -15.63977 -15.14625 -14.91548 -14.45044 -14.11016 -13.88387 -13.71559 -13.26001 -13.24186 -13.00666 -12.77236 -12.70532 -12.49782 -12.26447 -12.20451 -12.12409 -11.91221 -11.83405 -11.38850 -11.37133 -11.07149 -10.94314 -10.85334 -10.62953 -10.50112 -9.28338 -8.13934 -6.21342 1.40974 1.43523 1.50815 2.43962 3.19757 3.26616 3.74191 3.82791 3.96546 4.02215 4.13404 4.20272 4.36913 4.37250 4.47162 4.65319 4.74268 4.78027 4.82110 4.87517 4.93421 4.95223 4.97208 5.08029 5.08272 5.11521 5.20438 5.21590 5.25831 5.32615 5.48001 5.51341 5.53452 5.58240 5.65825 5.69909 5.87167 5.92478 6.11918 6.37002 6.56609 6.93653 7.46052 8.98392 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.065112 B = 0.003603 C = 0.003546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.923716 B = 7768.817203 C = 7893.385928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.057 4.057 3 C -0.122 4.122 4 C 0.040 3.960 5 C -0.516 4.516 6 H 0.067 0.933 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.267 1.267 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.082 3.918 14 N -0.685 5.685 15 C 0.060 3.940 16 C -0.097 4.097 17 C -0.111 4.111 18 C -0.142 4.142 19 C -0.141 4.141 20 C -0.134 4.134 21 H 0.068 0.932 22 H 0.039 0.961 23 H 0.028 0.972 24 H 0.035 0.965 25 H 0.047 0.953 26 H 0.068 0.932 27 H -0.017 1.017 28 H -0.017 1.017 29 H 0.260 0.740 30 H 0.015 0.985 31 H 0.053 0.947 32 H 0.343 0.657 33 H 0.061 0.939 34 H 0.023 0.977 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 3.870 21.247 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.057 4.057 3 C -0.179 4.179 4 C 0.003 3.997 5 C -0.554 4.554 6 H 0.085 0.915 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.192 1.192 11 H -0.213 1.213 12 H -0.193 1.193 13 C -0.047 4.047 14 N -0.317 5.317 15 C -0.069 4.069 16 C -0.135 4.135 17 C -0.130 4.130 18 C -0.179 4.179 19 C -0.178 4.178 20 C -0.172 4.172 21 H 0.087 0.913 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.001 0.999 28 H 0.001 0.999 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.163 0.837 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.807 3.439 21.129 21.590 hybrid contribution 1.018 0.052 -1.322 1.669 sum -1.789 3.491 19.807 20.192 Atomic orbital electron populations 1.21494 0.94248 1.00029 1.00560 1.20515 0.96372 0.95711 0.93148 1.21679 0.99403 0.95532 1.01269 1.19004 0.93896 0.94061 0.92782 1.21600 1.30304 1.12020 0.91447 0.91521 1.25943 0.95689 0.95903 1.02643 1.70113 1.38889 1.24923 1.24119 0.85613 0.78946 0.78795 0.78386 1.19195 1.21336 1.19290 1.21805 0.95658 0.97472 0.89800 1.60528 1.63605 1.06594 1.00967 1.21973 0.96682 0.98689 0.89566 1.21460 1.01040 0.98845 0.92126 1.22525 0.99606 0.97066 0.93813 1.23032 0.99999 0.98058 0.96827 1.22847 1.02097 0.96723 0.96136 1.22927 1.01765 0.96598 0.95882 0.91343 0.94195 0.95245 0.94537 0.93366 0.91308 0.99868 0.99893 0.93143 0.96679 0.92819 0.83708 0.92003 0.95870 0.91655 0.91439 0.89565 0.90308 0.91964 0.89881 0.91057 0.91157 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.12 8.06 71.98 0.58 -3.54 16 2 C -0.06 -2.32 0.60 -52.18 -0.03 -2.35 16 3 C -0.12 -4.45 7.89 71.98 0.57 -3.88 16 4 C 0.04 2.13 4.04 29.85 0.12 2.25 16 5 C -0.52 -28.93 7.65 25.60 0.20 -28.73 16 6 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 7 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 8 N -0.94 -58.15 13.29 21.45 0.28 -57.87 16 9 Si 0.96 44.79 29.54 68.60 2.03 46.82 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.08 2.91 4.65 86.30 0.40 3.32 16 14 N -0.68 -19.34 5.71 -513.89 -2.94 -22.27 16 15 C 0.06 1.43 5.68 86.30 0.49 1.92 16 16 C -0.10 -1.84 5.30 30.59 0.16 -1.68 16 17 C -0.11 -1.82 3.64 -10.27 -0.04 -1.86 16 18 C -0.14 -2.28 7.65 31.18 0.24 -2.04 16 19 C -0.14 -1.90 8.09 31.18 0.25 -1.64 16 20 C -0.13 -1.88 7.65 31.12 0.24 -1.64 16 21 H 0.07 2.29 7.60 -2.39 -0.02 2.28 16 22 H 0.04 1.64 6.62 -2.39 -0.02 1.62 16 23 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 24 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.05 1.91 6.62 -2.39 -0.02 1.89 16 26 H 0.07 2.02 6.57 -2.39 -0.02 2.01 16 27 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 28 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 29 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 30 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.34 8.94 6.77 -89.69 -0.61 8.33 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.07 1.35 7.87 -2.39 -0.02 1.33 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.08 1.32 7.92 -2.39 -0.02 1.30 16 39 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 Total: -1.00 -62.35 332.25 3.35 -59.00 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.33 Total: 14.03 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 3.64 Total: -39.71 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -2.65 Total: -80.14 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -62.35 3.35 -59.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130332096.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.936 kcal (2) G-P(sol) polarization free energy of solvation -62.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds