Wall clock time and date at job start Mon Mar 30 2020 17:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47167 * 2 1 4 4 C 1.53000 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47461 * 305.00250 * 4 3 2 6 6 C 1.53004 * 109.46656 * 65.00351 * 4 3 2 7 7 C 1.52994 * 109.46899 * 185.00069 * 4 3 2 8 8 H 1.08999 * 110.42463 * 302.31030 * 7 4 3 9 9 C 1.54903 * 110.37713 * 64.63176 * 7 4 3 10 10 C 1.55136 * 101.65783 * 155.89509 * 9 7 4 11 11 C 1.54325 * 103.01885 * 324.34826 * 10 9 7 12 12 N 1.47445 * 107.23174 * 22.28050 * 11 10 9 13 13 C 1.46896 * 110.99760 * 123.25993 * 12 11 10 14 14 C 1.53002 * 109.47246 * 69.87100 * 13 12 11 15 15 C 1.50706 * 109.46931 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 22 22 H 1.48498 * 109.47295 * 60.00420 * 19 17 15 23 23 H 1.08998 * 109.47484 * 300.00099 * 1 2 3 24 24 H 1.09006 * 109.46915 * 59.99971 * 1 2 3 25 25 H 1.08996 * 109.47473 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46999 * 240.00100 * 2 1 3 27 27 H 1.08999 * 109.46531 * 120.00014 * 2 1 3 28 28 H 1.09005 * 109.46780 * 60.00262 * 3 2 1 29 29 H 1.08999 * 109.47205 * 300.00237 * 3 2 1 30 30 H 1.08997 * 109.46877 * 299.99917 * 6 4 3 31 31 H 1.08998 * 109.47269 * 59.99781 * 6 4 3 32 32 H 1.09004 * 109.46842 * 180.02562 * 6 4 3 33 33 H 1.09000 * 110.98738 * 37.80387 * 9 7 4 34 34 H 1.08999 * 110.99343 * 273.98962 * 9 7 4 35 35 H 1.08994 * 110.71093 * 205.96197 * 10 9 7 36 36 H 1.09006 * 110.85419 * 82.79712 * 10 9 7 37 37 H 1.08997 * 109.88580 * 262.87408 * 11 10 9 38 38 H 1.09000 * 110.02121 * 141.76351 * 11 10 9 39 39 H 1.09004 * 109.47535 * 309.87247 * 13 12 11 40 40 H 1.08996 * 109.47194 * 189.87570 * 13 12 11 41 41 H 1.09000 * 109.46986 * 60.00111 * 14 13 12 42 42 H 1.08992 * 109.46974 * 300.00175 * 14 13 12 43 43 H 0.97000 * 119.99706 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9331 0.8531 0.8426 6 6 4.0805 0.8327 -1.3065 7 6 4.0799 2.8795 0.1264 8 1 3.6923 3.4931 -0.6868 9 6 3.6726 3.4784 1.4956 10 6 4.7472 4.5807 1.6877 11 6 6.0098 3.9474 1.0662 12 7 5.5583 2.9026 0.1289 13 6 6.0833 3.1443 -1.2215 14 6 7.5934 2.8982 -1.2332 15 6 8.1319 3.1456 -2.6189 16 1 7.4641 3.4485 -3.4117 17 6 9.4773 2.9853 -2.8743 18 7 10.2905 2.6160 -1.9089 19 14 10.1450 3.2926 -4.5916 20 1 11.6104 3.0524 -4.6032 21 1 9.4853 2.3712 -5.5514 22 1 9.8700 4.6977 -4.9855 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8901 29 1 1.6767 1.9563 -0.8899 30 1 3.7171 -0.1910 -1.3961 31 1 3.7175 1.4220 -2.1485 32 1 5.1705 0.8322 -1.3059 33 1 3.7368 2.7288 2.2843 34 1 2.6731 3.9111 1.4508 35 1 4.9015 4.7883 2.7466 36 1 4.4699 5.4902 1.1546 37 1 6.6252 3.5031 1.8485 38 1 6.5818 4.7046 0.5300 39 1 5.8811 4.1756 -1.5109 40 1 5.5995 2.4678 -1.9259 41 1 7.7957 1.8670 -0.9439 42 1 8.0772 3.5748 -0.5288 43 1 9.9438 2.4568 -1.0171 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135353950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:50:21 Heat of formation + Delta-G solvation = -37.235716 kcal Electronic energy + Delta-G solvation = -17916.225721 eV Core-core repulsion = 15380.648806 eV Total energy + Delta-G solvation = -2535.576914 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.30456 -36.09047 -33.89406 -32.18701 -31.78951 -28.16559 -27.71173 -26.42303 -24.04810 -22.68319 -21.47888 -20.83799 -19.67279 -19.37833 -16.66045 -16.00314 -15.33346 -15.24562 -14.12625 -13.71353 -13.58395 -13.42391 -13.36929 -13.04090 -12.69634 -12.56016 -12.21260 -11.92675 -11.69725 -11.53329 -11.26767 -11.15518 -10.88279 -10.81743 -10.70992 -10.58795 -10.41981 -10.35948 -10.10441 -10.03522 -9.87755 -9.46190 -8.51136 -8.26872 -7.71573 -6.31014 -3.99349 3.46114 3.48393 3.67057 4.33096 4.59802 4.81700 4.84997 4.96490 4.99860 5.09184 5.21452 5.34454 5.44852 5.46961 5.55424 5.65281 5.67941 5.74143 5.83156 5.87680 5.91525 5.97882 6.02148 6.05097 6.11319 6.19165 6.22800 6.26813 6.29497 6.36157 6.42546 6.51780 6.64832 6.75625 6.93325 7.39458 7.47452 7.72349 7.81638 8.30690 8.52246 8.94426 9.73100 11.10145 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.026598 B = 0.005409 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.464153 B = 5175.387607 C = 5932.639674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.072 4.072 5 H 0.073 0.927 6 C -0.151 4.151 7 C 0.076 3.924 8 H 0.047 0.953 9 C -0.122 4.122 10 C -0.143 4.143 11 C 0.045 3.955 12 N -0.525 5.525 13 C 0.059 3.941 14 C 0.017 3.983 15 C -0.603 4.603 16 H 0.046 0.954 17 C 0.016 3.984 18 N -0.913 5.913 19 Si 1.068 2.932 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.289 1.289 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.018 0.982 40 H 0.071 0.929 41 H 0.014 0.986 42 H 0.005 0.995 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.240 -1.064 5.987 18.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.091 4.091 5 H 0.091 0.909 6 C -0.208 4.208 7 C -0.033 4.033 8 H 0.065 0.935 9 C -0.160 4.160 10 C -0.181 4.181 11 C -0.083 4.083 12 N -0.249 5.249 13 C -0.068 4.068 14 C -0.020 4.020 15 C -0.642 4.642 16 H 0.064 0.936 17 C -0.188 4.188 18 N -0.549 5.549 19 Si 0.896 3.104 20 H -0.208 1.208 21 H -0.215 1.215 22 H -0.216 1.216 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.089 0.911 41 H 0.032 0.968 42 H 0.023 0.977 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.642 -1.550 5.224 16.563 hybrid contribution -1.702 0.900 0.591 2.014 sum -17.344 -0.650 5.814 18.304 Atomic orbital electron populations 1.21780 0.96349 1.01238 1.01538 1.21569 0.95241 0.97296 1.02185 1.21675 0.95480 0.96478 1.01590 1.21035 0.93515 0.95471 0.99035 0.90889 1.21985 1.03013 0.99469 0.96315 1.22561 0.89013 0.95624 0.96093 0.93477 1.22721 0.97930 0.97788 0.97558 1.22797 0.96236 0.98128 1.00960 1.22760 0.96189 0.93197 0.96147 1.63517 1.06317 1.45569 1.09529 1.22517 0.98985 0.97920 0.87385 1.19181 0.89339 0.96509 0.96975 1.22022 0.95737 1.50886 0.95505 0.93585 1.25802 0.93658 0.94190 1.05150 1.70762 1.37973 1.43200 1.03006 0.83566 0.76210 0.76277 0.74322 1.20770 1.21467 1.21562 0.93003 0.92938 0.93064 0.91711 0.92176 0.92209 0.92371 0.93307 0.93502 0.90624 0.90897 0.91584 0.91314 0.91990 0.91196 0.92461 0.96403 0.91098 0.96763 0.97671 0.91995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.91 37.16 0.37 -0.94 16 2 C -0.13 -1.26 5.69 -26.73 -0.15 -1.41 16 3 C -0.11 -1.26 4.59 -26.73 -0.12 -1.38 16 4 C -0.07 -0.98 2.13 -90.62 -0.19 -1.17 16 5 H 0.07 1.05 8.13 -51.93 -0.42 0.62 16 6 C -0.15 -2.26 7.57 37.16 0.28 -1.98 16 7 C 0.08 1.14 2.10 -66.19 -0.14 1.00 16 8 H 0.05 0.75 7.81 -51.93 -0.41 0.34 16 9 C -0.12 -1.55 5.55 -24.60 -0.14 -1.69 16 10 C -0.14 -1.92 6.94 -24.91 -0.17 -2.10 16 11 C 0.05 0.78 6.21 -2.83 -0.02 0.76 16 12 N -0.53 -9.71 4.50 -223.38 -1.01 -10.72 16 13 C 0.06 1.28 3.87 -3.83 -0.01 1.27 16 14 C 0.02 0.46 4.31 -27.88 -0.12 0.34 16 15 C -0.60 -17.59 9.11 -34.44 -0.31 -17.91 16 16 H 0.05 1.32 7.74 -52.49 -0.41 0.91 16 17 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 18 N -0.91 -28.62 13.65 55.43 0.76 -27.87 16 19 Si 1.07 25.78 29.90 -169.99 -5.08 20.70 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.68 6.57 -51.93 -0.34 0.34 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.62 7.10 -51.93 -0.37 0.25 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.65 6.56 -51.93 -0.34 0.31 16 31 H 0.05 0.69 7.95 -51.93 -0.41 0.28 16 32 H 0.07 1.37 6.16 -51.93 -0.32 1.05 16 33 H 0.07 0.90 8.04 -51.93 -0.42 0.48 16 34 H 0.07 0.73 7.92 -51.93 -0.41 0.31 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.06 1.08 6.91 -51.93 -0.36 0.73 16 39 H 0.02 0.40 7.96 -51.93 -0.41 -0.02 16 40 H 0.07 1.53 5.29 -51.93 -0.27 1.25 16 41 H 0.01 0.40 8.01 -51.93 -0.42 -0.02 16 42 H 0.01 0.14 7.01 -51.93 -0.36 -0.22 16 43 H 0.27 8.47 7.22 -40.82 -0.29 8.18 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -30.54 324.33 -9.42 -39.96 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -8.14 Total: -2.12 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -0.83 Total: -24.83 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: -0.25 Total: -38.59 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.70 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.54 -9.42 -39.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135353950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.719 kcal (2) G-P(sol) polarization free energy of solvation -30.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds