Wall clock time and date at job start Mon Mar 30 2020 17:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47167 * 2 1 4 4 C 1.53000 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47461 * 305.00250 * 4 3 2 6 6 C 1.53004 * 109.46656 * 65.00351 * 4 3 2 7 7 C 1.52994 * 109.46899 * 185.00069 * 4 3 2 8 8 H 1.08999 * 110.42463 * 302.31030 * 7 4 3 9 9 C 1.54903 * 110.37713 * 64.63176 * 7 4 3 10 10 C 1.55136 * 101.65783 * 155.89509 * 9 7 4 11 11 C 1.54325 * 103.01885 * 324.34826 * 10 9 7 12 12 N 1.47445 * 107.23174 * 22.28050 * 11 10 9 13 13 C 1.46896 * 110.99760 * 123.25993 * 12 11 10 14 14 C 1.53002 * 109.47246 * 69.87100 * 13 12 11 15 15 C 1.50706 * 109.46931 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00338 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99424 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46845 * 180.02562 * 19 17 15 21 21 H 1.48503 * 109.47399 * 299.99813 * 19 17 15 22 22 H 1.48498 * 109.47295 * 60.00420 * 19 17 15 23 23 H 1.08998 * 109.47484 * 300.00099 * 1 2 3 24 24 H 1.09006 * 109.46915 * 59.99971 * 1 2 3 25 25 H 1.08996 * 109.47473 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46999 * 240.00100 * 2 1 3 27 27 H 1.08999 * 109.46531 * 120.00014 * 2 1 3 28 28 H 1.09005 * 109.46780 * 60.00262 * 3 2 1 29 29 H 1.08999 * 109.47205 * 300.00237 * 3 2 1 30 30 H 1.08997 * 109.46877 * 299.99917 * 6 4 3 31 31 H 1.08998 * 109.47269 * 59.99781 * 6 4 3 32 32 H 1.09004 * 109.46842 * 180.02562 * 6 4 3 33 33 H 1.09000 * 110.98738 * 37.80387 * 9 7 4 34 34 H 1.08999 * 110.99343 * 273.98962 * 9 7 4 35 35 H 1.08994 * 110.71093 * 205.96197 * 10 9 7 36 36 H 1.09006 * 110.85419 * 82.79712 * 10 9 7 37 37 H 1.08997 * 109.88580 * 262.87408 * 11 10 9 38 38 H 1.09000 * 110.02121 * 141.76351 * 11 10 9 39 39 H 1.09004 * 109.47535 * 309.87247 * 13 12 11 40 40 H 1.08996 * 109.47194 * 189.87570 * 13 12 11 41 41 H 1.09000 * 109.46986 * 60.00111 * 14 13 12 42 42 H 1.08992 * 109.46974 * 300.00175 * 14 13 12 43 43 H 0.97000 * 119.99706 * 359.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9331 0.8531 0.8426 6 6 4.0805 0.8327 -1.3065 7 6 4.0799 2.8795 0.1264 8 1 3.6923 3.4931 -0.6868 9 6 3.6726 3.4784 1.4956 10 6 4.7472 4.5807 1.6877 11 6 6.0098 3.9474 1.0662 12 7 5.5583 2.9026 0.1289 13 6 6.0833 3.1443 -1.2215 14 6 7.5934 2.8982 -1.2332 15 6 8.1319 3.1456 -2.6189 16 1 7.4641 3.4485 -3.4117 17 6 9.4773 2.9853 -2.8743 18 7 10.2905 2.6160 -1.9089 19 14 10.1450 3.2926 -4.5916 20 1 11.6104 3.0524 -4.6032 21 1 9.4853 2.3712 -5.5514 22 1 9.8700 4.6977 -4.9855 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8901 29 1 1.6767 1.9563 -0.8899 30 1 3.7171 -0.1910 -1.3961 31 1 3.7175 1.4220 -2.1485 32 1 5.1705 0.8322 -1.3059 33 1 3.7368 2.7288 2.2843 34 1 2.6731 3.9111 1.4508 35 1 4.9015 4.7883 2.7466 36 1 4.4699 5.4902 1.1546 37 1 6.6252 3.5031 1.8485 38 1 6.5818 4.7046 0.5300 39 1 5.8811 4.1756 -1.5109 40 1 5.5995 2.4678 -1.9259 41 1 7.7957 1.8670 -0.9439 42 1 8.0772 3.5748 -0.5288 43 1 9.9438 2.4568 -1.0171 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135353950.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:50:21 Heat of formation + Delta-G solvation = -54.552928 kcal Electronic energy + Delta-G solvation = -17916.976651 eV Core-core repulsion = 15380.648806 eV Total energy + Delta-G solvation = -2536.327845 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.61054 -37.18158 -35.91984 -33.58502 -33.10692 -29.98553 -28.95709 -27.38396 -26.03840 -24.08454 -22.91731 -21.89878 -21.08241 -20.60953 -18.87293 -17.35565 -16.74844 -16.17358 -15.67099 -15.25998 -15.05584 -14.89261 -14.49966 -14.30943 -14.27509 -13.83147 -13.50061 -13.34961 -13.06711 -12.89917 -12.64179 -12.53047 -12.21043 -12.07655 -11.97413 -11.92182 -11.79300 -11.68339 -11.53819 -11.45172 -11.16696 -11.00884 -10.71612 -10.55568 -9.21966 -8.71833 -6.41849 1.50406 1.59621 1.79092 2.54714 3.02383 3.14335 3.65892 3.72039 3.95972 4.04027 4.09450 4.19454 4.30281 4.34729 4.42751 4.47636 4.51487 4.59218 4.68623 4.74888 4.87590 4.88953 4.91731 4.95344 4.96632 4.98216 5.07219 5.11433 5.18737 5.23943 5.27485 5.30943 5.34042 5.41954 5.46150 5.57653 5.59370 5.88655 6.15039 6.18909 6.27561 6.55159 7.41310 8.69131 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.026598 B = 0.005409 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.464153 B = 5175.387607 C = 5932.639674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.066 4.066 5 H 0.067 0.933 6 C -0.147 4.147 7 C 0.071 3.929 8 H 0.042 0.958 9 C -0.111 4.111 10 C -0.133 4.133 11 C 0.038 3.962 12 N -0.537 5.537 13 C 0.079 3.921 14 C 0.025 3.975 15 C -0.621 4.621 16 H 0.049 0.951 17 C -0.038 4.038 18 N -0.936 5.936 19 Si 1.119 2.881 20 H -0.282 1.282 21 H -0.268 1.268 22 H -0.268 1.268 23 H 0.059 0.941 24 H 0.053 0.947 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.030 0.970 39 H 0.010 0.990 40 H 0.072 0.928 41 H -0.014 1.014 42 H -0.016 1.016 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.516 -0.682 5.917 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.085 4.085 5 H 0.085 0.915 6 C -0.204 4.204 7 C -0.037 4.037 8 H 0.061 0.939 9 C -0.149 4.149 10 C -0.171 4.171 11 C -0.090 4.090 12 N -0.262 5.262 13 C -0.049 4.049 14 C -0.012 4.012 15 C -0.659 4.659 16 H 0.068 0.932 17 C -0.235 4.235 18 N -0.573 5.573 19 Si 0.939 3.061 20 H -0.207 1.207 21 H -0.193 1.193 22 H -0.193 1.193 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.028 0.972 40 H 0.090 0.910 41 H 0.004 0.996 42 H 0.002 0.998 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.954 -1.168 5.177 18.722 hybrid contribution -0.987 0.751 0.659 1.404 sum -18.942 -0.417 5.835 19.824 Atomic orbital electron populations 1.21754 0.95022 1.01880 1.01993 1.21559 0.96387 0.96451 1.01895 1.21603 0.92908 0.97432 1.02369 1.21012 0.95578 0.94200 0.97746 0.91500 1.21922 1.00424 1.00728 0.97355 1.22726 0.86441 0.96775 0.97781 0.93950 1.22719 0.98950 0.97459 0.95778 1.22755 0.94098 0.98244 1.02017 1.22798 0.98073 0.92471 0.95613 1.63443 1.08989 1.46186 1.07540 1.22120 0.95773 0.97261 0.89708 1.19034 0.92700 0.94057 0.95430 1.22443 0.96309 1.50585 0.96593 0.93250 1.27494 0.94428 0.92997 1.08556 1.70907 1.38383 1.45128 1.02873 0.82930 0.75675 0.77696 0.69761 1.20693 1.19261 1.19342 0.92217 0.92808 0.92410 0.92460 0.92096 0.90657 0.92283 0.91752 0.93616 0.94443 0.90103 0.88673 0.89008 0.91418 0.91807 0.95118 0.97175 0.90998 0.99554 0.99801 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.91 71.98 0.71 -1.45 16 2 C -0.13 -2.22 5.69 30.60 0.17 -2.05 16 3 C -0.11 -2.05 4.59 30.59 0.14 -1.91 16 4 C -0.07 -1.73 2.13 -10.79 -0.02 -1.75 16 5 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 6 C -0.15 -4.41 7.57 71.98 0.55 -3.86 16 7 C 0.07 2.04 2.10 45.38 0.10 2.14 16 8 H 0.04 1.28 7.81 -2.39 -0.02 1.27 16 9 C -0.11 -2.49 5.55 31.98 0.18 -2.31 16 10 C -0.13 -3.30 6.94 31.78 0.22 -3.08 16 11 C 0.04 1.34 6.21 86.65 0.54 1.88 16 12 N -0.54 -20.24 4.50 -860.65 -3.88 -24.12 16 13 C 0.08 3.58 3.87 86.30 0.33 3.91 16 14 C 0.03 1.41 4.31 29.85 0.13 1.54 16 15 C -0.62 -37.20 9.11 25.60 0.23 -36.97 16 16 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 17 C -0.04 -2.25 5.46 84.66 0.46 -1.79 16 18 N -0.94 -60.36 13.65 21.45 0.29 -60.06 16 19 Si 1.12 51.63 29.90 68.60 2.05 53.68 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 23 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 1.09 6.57 -2.39 -0.02 1.08 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 28 H 0.07 1.26 7.10 -2.38 -0.02 1.24 16 29 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.06 1.68 6.56 -2.39 -0.02 1.67 16 31 H 0.04 1.34 7.95 -2.39 -0.02 1.33 16 32 H 0.04 1.40 6.16 -2.39 -0.01 1.38 16 33 H 0.08 1.72 8.04 -2.39 -0.02 1.70 16 34 H 0.09 1.65 7.92 -2.39 -0.02 1.63 16 35 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.03 1.21 6.91 -2.39 -0.02 1.19 16 39 H 0.01 0.46 7.96 -2.39 -0.02 0.44 16 40 H 0.07 3.20 5.29 -2.39 -0.01 3.19 16 41 H -0.01 -0.84 8.01 -2.39 -0.02 -0.86 16 42 H -0.02 -0.97 7.01 -2.39 -0.02 -0.98 16 43 H 0.25 16.74 7.22 -92.71 -0.67 16.07 16 Total: -1.00 -67.89 324.33 3.24 -64.65 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.03 Total: 11.55 kcal Atomic # 6 Polarization: -49.43 SS G_CDS: 3.74 Total: -45.70 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -3.58 Total: -84.18 kcal Atomic # 14 Polarization: 51.63 SS G_CDS: 2.05 Total: 53.68 kcal Total: -67.89 3.24 -64.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135353950.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.096 kcal (2) G-P(sol) polarization free energy of solvation -67.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds