Wall clock time and date at job start Mon Mar 30 2020 17:50:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46684 * 2 1 4 4 C 1.53001 * 109.46994 * 65.00790 * 3 2 1 5 5 C 1.53000 * 109.46951 * 186.13584 * 4 3 2 6 6 C 1.53003 * 109.46903 * 185.00691 * 3 2 1 7 7 N 1.46495 * 109.47423 * 63.62257 * 6 3 2 8 8 C 1.36929 * 120.00406 * 264.25871 * 7 6 3 9 9 H 1.08006 * 120.00223 * 12.63747 * 8 7 6 10 10 C 1.38812 * 120.00021 * 192.63161 * 8 7 6 11 11 N 1.31618 * 120.00036 * 17.25840 * 10 8 7 12 12 Si 1.86802 * 119.99957 * 197.25687 * 10 8 7 13 13 H 1.48499 * 109.47268 * 60.00387 * 12 10 8 14 14 H 1.48507 * 109.47004 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47195 * 300.00217 * 12 10 8 16 16 C 1.46506 * 119.99375 * 84.26536 * 7 6 3 17 17 C 1.54263 * 110.03376 * 358.22697 * 16 7 6 18 18 C 1.54964 * 104.16057 * 217.13908 * 17 16 7 19 19 C 1.54884 * 102.77707 * 37.89292 * 18 17 16 20 20 C 1.53878 * 110.02844 * 241.01389 * 16 7 6 21 21 H 1.09001 * 109.46842 * 299.98945 * 1 2 3 22 22 H 1.08998 * 109.47558 * 59.99612 * 1 2 3 23 23 H 1.09002 * 109.46737 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46704 * 240.00526 * 2 1 3 25 25 H 1.08998 * 109.47558 * 120.00388 * 2 1 3 26 26 H 1.09000 * 109.47213 * 304.99995 * 3 2 1 27 27 H 1.09001 * 109.46698 * 306.12782 * 4 3 2 28 28 H 1.08997 * 109.47323 * 66.13201 * 4 3 2 29 29 H 1.08999 * 109.46662 * 303.25649 * 5 4 3 30 30 H 1.08994 * 109.47659 * 63.25528 * 5 4 3 31 31 H 1.08997 * 109.46805 * 183.26011 * 5 4 3 32 32 H 1.09004 * 109.46761 * 303.62849 * 6 3 2 33 33 H 1.08995 * 109.47417 * 183.63376 * 6 3 2 34 34 H 0.97005 * 120.00012 * 184.91214 * 11 10 8 35 35 H 1.08992 * 110.01828 * 119.62796 * 16 7 6 36 36 H 1.08996 * 110.49052 * 335.79226 * 17 16 7 37 37 H 1.09006 * 110.48397 * 98.42940 * 17 16 7 38 38 H 1.08996 * 110.71930 * 279.57238 * 18 17 16 39 39 H 1.09001 * 110.92412 * 156.30115 * 18 17 16 40 40 H 1.09004 * 110.48767 * 203.40314 * 19 18 17 41 41 H 1.08994 * 110.60247 * 80.81574 * 19 18 17 42 42 H 1.08998 * 110.03315 * 238.57339 * 20 16 7 43 43 H 1.09007 * 110.03103 * 359.97438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0097 3.6087 1.2448 6 6 3.5648 1.4445 -0.1259 7 7 3.9490 0.8677 -1.4166 8 6 4.2849 -0.4570 -1.5018 9 1 4.0746 -1.1216 -0.6768 10 6 4.8955 -0.9458 -2.6485 11 7 5.4567 -0.1144 -3.5007 12 14 4.9208 -2.7836 -2.9823 13 1 3.5276 -3.2892 -3.0745 14 1 5.6284 -3.0447 -4.2616 15 1 5.6272 -3.4780 -1.8758 16 6 3.9740 1.7084 -2.6161 17 6 3.5157 3.1397 -2.2680 18 6 2.6960 3.5867 -3.5048 19 6 1.9501 2.2905 -3.9080 20 6 2.9793 1.1687 -3.6588 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.6053 1.9816 -0.8418 27 1 0.5590 2.0294 1.4502 28 1 2.1564 1.6550 2.1406 29 1 3.0767 3.7056 1.0442 30 1 1.4449 4.0928 0.4483 31 1 1.7745 4.0833 2.1974 32 1 3.9966 0.8511 0.6801 33 1 3.9335 2.4681 -0.0611 34 1 5.8204 -0.4480 -4.3358 35 1 4.9796 1.7300 -3.0358 36 1 2.8883 3.1332 -1.3767 37 1 4.3773 3.7918 -2.1244 38 1 3.3565 3.9176 -4.3061 39 1 1.9889 4.3727 -3.2397 40 1 1.6694 2.3237 -4.9608 41 1 1.0686 2.1452 -3.2836 42 1 3.5021 0.9291 -4.5846 43 1 2.4783 0.2810 -3.2724 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153873667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:50:52 Heat of formation + Delta-G solvation = -2.576950 kcal Electronic energy + Delta-G solvation = -19227.271599 eV Core-core repulsion = 16693.197602 eV Total energy + Delta-G solvation = -2534.073998 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -38.36614 -36.08781 -33.60745 -31.32287 -30.97285 -27.75211 -27.31986 -26.33489 -24.14656 -22.31075 -21.78471 -19.67938 -19.20335 -18.40575 -16.57135 -15.15254 -14.83692 -14.23342 -14.09242 -13.94764 -13.63155 -13.27202 -13.06566 -12.43986 -12.18913 -12.01762 -11.66849 -11.35224 -11.16677 -10.99107 -10.83732 -10.65205 -10.60246 -10.36642 -10.28627 -10.11400 -10.03271 -9.94497 -9.61611 -9.54158 -9.47796 -9.28300 -9.06373 -8.43171 -6.69930 -5.46604 -3.01365 3.44894 3.51252 3.52547 4.60430 5.30097 5.38344 5.42338 5.54005 5.59508 5.63558 5.67003 5.75866 5.80621 5.91707 5.93110 6.16583 6.19538 6.31616 6.33837 6.37962 6.39637 6.42897 6.46941 6.55665 6.58148 6.67073 6.73872 6.77685 6.84335 6.85670 6.89856 6.94887 7.22479 7.24238 7.34755 7.38789 7.69743 7.90777 8.17680 8.54169 9.39196 10.04098 10.48089 11.41896 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.019523 B = 0.010715 C = 0.008590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.872502 B = 2612.550827 C = 3258.848700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.109 4.109 4 C -0.120 4.120 5 C -0.152 4.152 6 C 0.152 3.848 7 N -0.591 5.591 8 C -0.233 4.233 9 H 0.070 0.930 10 C -0.005 4.005 11 N -0.901 5.901 12 Si 0.891 3.109 13 H -0.288 1.288 14 H -0.293 1.293 15 H -0.287 1.287 16 C 0.191 3.809 17 C -0.153 4.153 18 C -0.118 4.118 19 C -0.128 4.128 20 C -0.108 4.108 21 H 0.045 0.955 22 H 0.047 0.953 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.046 0.954 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.039 0.961 34 H 0.248 0.752 35 H 0.101 0.899 36 H 0.073 0.927 37 H 0.047 0.953 38 H 0.057 0.943 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.299 5.789 4.569 10.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.130 4.130 4 C -0.158 4.158 5 C -0.209 4.209 6 C 0.025 3.975 7 N -0.312 5.312 8 C -0.363 4.363 9 H 0.088 0.912 10 C -0.202 4.202 11 N -0.548 5.548 12 Si 0.722 3.278 13 H -0.216 1.216 14 H -0.219 1.219 15 H -0.213 1.213 16 C 0.085 3.915 17 C -0.191 4.191 18 C -0.156 4.156 19 C -0.166 4.166 20 C -0.147 4.147 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.106 0.894 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.110 5.727 4.448 10.155 hybrid contribution -0.211 -1.063 -0.333 1.134 sum -7.321 4.663 4.114 9.606 Atomic orbital electron populations 1.21835 0.97829 1.00314 1.00673 1.21524 0.93573 0.97218 1.02910 1.21956 0.99767 0.95476 0.95819 1.21618 1.00234 0.95233 0.98711 1.21826 1.01934 0.96699 1.00457 1.20849 0.91311 0.96605 0.88715 1.44164 1.77518 1.07511 1.02013 1.19153 1.30818 0.84543 1.01764 0.91245 1.24634 0.99552 0.96906 0.99094 1.69988 1.41258 1.32457 1.11128 0.86515 0.77423 0.86661 0.77206 1.21550 1.21893 1.21325 1.21292 0.99977 0.84545 0.85647 1.23118 0.98777 0.99323 0.97836 1.22387 0.98218 0.96761 0.98255 1.22438 0.98655 0.96666 0.98800 1.22464 0.95795 0.96415 1.00028 0.93634 0.93427 0.93849 0.89439 0.93540 0.91557 0.92812 0.92728 0.92282 0.93199 0.93785 0.93917 0.94294 0.94114 0.88205 0.90835 0.93460 0.92460 0.93464 0.93766 0.93241 0.92856 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.68 37.16 0.36 -1.90 16 2 C -0.11 -2.04 5.08 -26.73 -0.14 -2.17 16 3 C -0.11 -1.88 1.57 -90.62 -0.14 -2.02 16 4 C -0.12 -1.72 5.28 -26.73 -0.14 -1.86 16 5 C -0.15 -2.00 9.37 37.16 0.35 -1.65 16 6 C 0.15 3.03 4.30 -4.04 -0.02 3.01 16 7 N -0.59 -13.89 2.39 -164.39 -0.39 -14.29 16 8 C -0.23 -6.08 7.34 -15.06 -0.11 -6.19 16 9 H 0.07 1.80 7.72 -52.48 -0.41 1.40 16 10 C -0.01 -0.14 4.58 -17.43 -0.08 -0.22 16 11 N -0.90 -25.09 9.12 55.49 0.51 -24.59 16 12 Si 0.89 21.73 29.59 -169.99 -5.03 16.70 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 16 C 0.19 4.39 2.83 -66.81 -0.19 4.20 16 17 C -0.15 -2.92 5.34 -25.03 -0.13 -3.05 16 18 C -0.12 -2.04 6.91 -24.70 -0.17 -2.21 16 19 C -0.13 -2.36 6.83 -25.07 -0.17 -2.54 16 20 C -0.11 -2.41 5.09 -25.61 -0.13 -2.54 16 21 H 0.04 0.62 6.44 -51.93 -0.33 0.28 16 22 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.09 1.85 6.25 -51.93 -0.32 1.53 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.22 6.65 -51.93 -0.35 0.88 16 27 H 0.05 0.73 6.30 -51.93 -0.33 0.40 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.82 6.39 -51.93 -0.33 0.48 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.87 7.99 -51.93 -0.42 0.46 16 33 H 0.04 0.75 4.69 -51.93 -0.24 0.50 16 34 H 0.25 6.85 8.32 -40.82 -0.34 6.51 16 35 H 0.10 2.69 5.97 -51.93 -0.31 2.38 16 36 H 0.07 1.35 3.64 -51.93 -0.19 1.16 16 37 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.05 1.28 7.54 -51.93 -0.39 0.89 16 43 H 0.06 1.44 7.31 -51.93 -0.38 1.06 16 LS Contribution 311.39 15.07 4.69 4.69 Total: -1.00 -26.40 311.39 -8.72 -35.12 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -7.78 Total: 1.50 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -0.71 Total: -19.15 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.11 Total: -38.87 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.40 -8.72 -35.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153873667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.548 kcal (2) G-P(sol) polarization free energy of solvation -26.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds