Wall clock time and date at job start Mon Mar 30 2020 17:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46684 * 2 1 4 4 C 1.53001 * 109.46994 * 65.00790 * 3 2 1 5 5 C 1.53000 * 109.46951 * 186.13584 * 4 3 2 6 6 C 1.53003 * 109.46903 * 185.00691 * 3 2 1 7 7 N 1.46495 * 109.47423 * 63.62257 * 6 3 2 8 8 C 1.36929 * 120.00406 * 264.25871 * 7 6 3 9 9 H 1.08006 * 120.00223 * 12.63747 * 8 7 6 10 10 C 1.38812 * 120.00021 * 192.63161 * 8 7 6 11 11 N 1.31618 * 120.00036 * 17.25840 * 10 8 7 12 12 Si 1.86802 * 119.99957 * 197.25687 * 10 8 7 13 13 H 1.48499 * 109.47268 * 60.00387 * 12 10 8 14 14 H 1.48507 * 109.47004 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47195 * 300.00217 * 12 10 8 16 16 C 1.46506 * 119.99375 * 84.26536 * 7 6 3 17 17 C 1.54263 * 110.03376 * 358.22697 * 16 7 6 18 18 C 1.54964 * 104.16057 * 217.13908 * 17 16 7 19 19 C 1.54884 * 102.77707 * 37.89292 * 18 17 16 20 20 C 1.53878 * 110.02844 * 241.01389 * 16 7 6 21 21 H 1.09001 * 109.46842 * 299.98945 * 1 2 3 22 22 H 1.08998 * 109.47558 * 59.99612 * 1 2 3 23 23 H 1.09002 * 109.46737 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46704 * 240.00526 * 2 1 3 25 25 H 1.08998 * 109.47558 * 120.00388 * 2 1 3 26 26 H 1.09000 * 109.47213 * 304.99995 * 3 2 1 27 27 H 1.09001 * 109.46698 * 306.12782 * 4 3 2 28 28 H 1.08997 * 109.47323 * 66.13201 * 4 3 2 29 29 H 1.08999 * 109.46662 * 303.25649 * 5 4 3 30 30 H 1.08994 * 109.47659 * 63.25528 * 5 4 3 31 31 H 1.08997 * 109.46805 * 183.26011 * 5 4 3 32 32 H 1.09004 * 109.46761 * 303.62849 * 6 3 2 33 33 H 1.08995 * 109.47417 * 183.63376 * 6 3 2 34 34 H 0.97005 * 120.00012 * 184.91214 * 11 10 8 35 35 H 1.08992 * 110.01828 * 119.62796 * 16 7 6 36 36 H 1.08996 * 110.49052 * 335.79226 * 17 16 7 37 37 H 1.09006 * 110.48397 * 98.42940 * 17 16 7 38 38 H 1.08996 * 110.71930 * 279.57238 * 18 17 16 39 39 H 1.09001 * 110.92412 * 156.30115 * 18 17 16 40 40 H 1.09004 * 110.48767 * 203.40314 * 19 18 17 41 41 H 1.08994 * 110.60247 * 80.81574 * 19 18 17 42 42 H 1.08998 * 110.03315 * 238.57339 * 20 16 7 43 43 H 1.09007 * 110.03103 * 359.97438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0097 3.6087 1.2448 6 6 3.5648 1.4445 -0.1259 7 7 3.9490 0.8677 -1.4166 8 6 4.2849 -0.4570 -1.5018 9 1 4.0746 -1.1216 -0.6768 10 6 4.8955 -0.9458 -2.6485 11 7 5.4567 -0.1144 -3.5007 12 14 4.9208 -2.7836 -2.9823 13 1 3.5276 -3.2892 -3.0745 14 1 5.6284 -3.0447 -4.2616 15 1 5.6272 -3.4780 -1.8758 16 6 3.9740 1.7084 -2.6161 17 6 3.5157 3.1397 -2.2680 18 6 2.6960 3.5867 -3.5048 19 6 1.9501 2.2905 -3.9080 20 6 2.9793 1.1687 -3.6588 21 1 -0.3633 0.5137 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.6053 1.9816 -0.8418 27 1 0.5590 2.0294 1.4502 28 1 2.1564 1.6550 2.1406 29 1 3.0767 3.7056 1.0442 30 1 1.4449 4.0928 0.4483 31 1 1.7745 4.0833 2.1974 32 1 3.9966 0.8511 0.6801 33 1 3.9335 2.4681 -0.0611 34 1 5.8204 -0.4480 -4.3358 35 1 4.9796 1.7300 -3.0358 36 1 2.8883 3.1332 -1.3767 37 1 4.3773 3.7918 -2.1244 38 1 3.3565 3.9176 -4.3061 39 1 1.9889 4.3727 -3.2397 40 1 1.6694 2.3237 -4.9608 41 1 1.0686 2.1452 -3.2836 42 1 3.5021 0.9291 -4.5846 43 1 2.4783 0.2810 -3.2724 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153873667.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:50:51 Heat of formation + Delta-G solvation = -14.293270 kcal Electronic energy + Delta-G solvation = -19227.779657 eV Core-core repulsion = 16693.197602 eV Total energy + Delta-G solvation = -2534.582055 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -40.00225 -37.53779 -35.39176 -32.89178 -32.48758 -29.40748 -28.83951 -28.07265 -25.73931 -23.78154 -23.26159 -21.23745 -20.65348 -20.15676 -18.47630 -16.91332 -16.44195 -15.94831 -15.69619 -15.30639 -15.02641 -14.92468 -14.37221 -14.00616 -13.78539 -13.42814 -13.06564 -13.00834 -12.79716 -12.62523 -12.43136 -12.27374 -12.12252 -11.94514 -11.75237 -11.69556 -11.59625 -11.54851 -11.33059 -11.06184 -11.00699 -10.90101 -10.77707 -10.43591 -8.66454 -7.50494 -5.06790 1.45470 1.48224 1.52690 2.59603 3.43226 3.72635 4.06150 4.07915 4.15793 4.22556 4.29057 4.38085 4.52243 4.62366 4.71666 4.78870 4.82893 4.93971 4.96143 4.99194 5.02037 5.08848 5.12225 5.18131 5.19897 5.25195 5.28438 5.30247 5.34754 5.39382 5.46045 5.56299 5.61079 5.63421 5.67987 5.80577 5.84184 5.99032 6.23156 6.53417 7.35362 8.11799 8.48545 9.32996 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.019523 B = 0.010715 C = 0.008590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.872502 B = 2612.550827 C = 3258.848700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.096 4.096 4 C -0.114 4.114 5 C -0.150 4.150 6 C 0.150 3.850 7 N -0.601 5.601 8 C -0.227 4.227 9 H 0.065 0.935 10 C -0.053 4.053 11 N -0.922 5.922 12 Si 0.938 3.062 13 H -0.289 1.289 14 H -0.300 1.300 15 H -0.283 1.283 16 C 0.187 3.813 17 C -0.145 4.145 18 C -0.109 4.109 19 C -0.119 4.119 20 C -0.098 4.098 21 H 0.067 0.933 22 H 0.045 0.955 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.049 0.951 34 H 0.238 0.762 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.025 0.975 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.287 7.363 5.836 13.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.151 4.151 3 C -0.117 4.117 4 C -0.152 4.152 5 C -0.207 4.207 6 C 0.024 3.976 7 N -0.323 5.323 8 C -0.357 4.357 9 H 0.083 0.917 10 C -0.247 4.247 11 N -0.571 5.571 12 Si 0.769 3.231 13 H -0.216 1.216 14 H -0.227 1.227 15 H -0.209 1.209 16 C 0.082 3.918 17 C -0.182 4.182 18 C -0.147 4.147 19 C -0.157 4.157 20 C -0.137 4.137 21 H 0.086 0.914 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.114 7.308 5.746 13.019 hybrid contribution 0.428 -1.571 -0.663 1.758 sum -8.687 5.737 5.082 11.585 Atomic orbital electron populations 1.21758 0.95377 1.01088 1.01652 1.21443 0.95744 0.97142 1.00798 1.21740 0.97096 0.95409 0.97470 1.21562 1.01241 0.95800 0.96583 1.21805 1.01290 0.95776 1.01854 1.21013 0.93388 0.96557 0.86629 1.44343 1.77454 1.06865 1.03588 1.19323 1.29176 0.85949 1.01287 0.91713 1.25161 1.00506 0.99478 0.99576 1.70202 1.42647 1.33189 1.11049 0.85751 0.77026 0.83688 0.76608 1.21632 1.22664 1.20901 1.21100 0.98080 0.87014 0.85646 1.23015 0.99417 0.96451 0.99366 1.22359 0.98367 0.96768 0.97191 1.22358 0.97719 0.95539 1.00096 1.22246 0.96360 0.96796 0.98345 0.91384 0.93575 0.93319 0.93548 0.93664 0.92287 0.91150 0.92522 0.93299 0.92765 0.91692 0.95002 0.93247 0.95156 0.92543 0.89685 0.93110 0.92190 0.90095 0.92223 0.92301 0.95651 0.95368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.68 71.98 0.70 -3.25 16 2 C -0.11 -3.93 5.08 30.60 0.16 -3.78 16 3 C -0.10 -3.15 1.57 -10.79 -0.02 -3.17 16 4 C -0.11 -2.90 5.28 30.59 0.16 -2.74 16 5 C -0.15 -3.41 9.37 71.98 0.67 -2.73 16 6 C 0.15 5.87 4.30 86.38 0.37 6.25 16 7 N -0.60 -28.79 2.39 -674.02 -1.61 -30.40 16 8 C -0.23 -12.16 7.34 84.03 0.62 -11.54 16 9 H 0.07 3.46 7.72 -2.91 -0.02 3.44 16 10 C -0.05 -2.95 4.58 84.86 0.39 -2.56 16 11 N -0.92 -53.59 9.12 21.65 0.20 -53.39 16 12 Si 0.94 46.10 29.59 68.60 2.03 48.13 16 13 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 14 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 15 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 16 C 0.19 8.76 2.83 45.71 0.13 8.89 16 17 C -0.14 -5.31 5.34 31.69 0.17 -5.14 16 18 C -0.11 -3.46 6.91 31.91 0.22 -3.24 16 19 C -0.12 -4.21 6.83 31.67 0.22 -3.99 16 20 C -0.10 -4.49 5.09 31.32 0.16 -4.33 16 21 H 0.07 1.60 6.44 -2.39 -0.02 1.58 16 22 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.05 1.99 6.25 -2.39 -0.01 1.97 16 25 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 2.04 6.65 -2.39 -0.02 2.03 16 27 H 0.07 1.60 6.30 -2.39 -0.02 1.58 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.20 6.39 -2.39 -0.02 1.19 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.03 1.30 7.99 -2.38 -0.02 1.28 16 33 H 0.05 1.84 4.69 -2.39 -0.01 1.82 16 34 H 0.24 13.82 8.32 -92.70 -0.77 13.05 16 35 H 0.06 3.18 5.97 -2.39 -0.01 3.17 16 36 H 0.08 2.91 3.64 -2.39 -0.01 2.90 16 37 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.02 1.26 7.54 -2.39 -0.02 1.24 16 43 H 0.03 1.42 7.31 -2.38 -0.02 1.40 16 Total: -1.00 -58.92 311.39 5.51 -53.41 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 0.95 Total: 13.59 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 3.94 Total: -31.34 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -1.42 Total: -83.79 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -58.92 5.51 -53.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153873667.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.117 kcal (2) G-P(sol) polarization free energy of solvation -58.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds