Wall clock time and date at job start Mon Mar 30 2020 17:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53000 * 109.46975 * 2 1 4 4 C 1.53004 * 109.46898 * 60.00152 * 3 2 1 5 5 C 1.52994 * 109.47123 * 299.99979 * 3 2 1 6 6 C 1.52997 * 109.47085 * 180.02562 * 3 2 1 7 7 H 1.09001 * 110.33395 * 57.74787 * 6 3 2 8 8 C 1.54916 * 110.37265 * 295.37491 * 6 3 2 9 9 C 1.55398 * 101.74107 * 204.18989 * 8 6 3 10 10 C 1.54322 * 102.90031 * 35.47831 * 9 8 6 11 11 N 1.47439 * 107.36952 * 337.89642 * 10 9 8 12 12 C 1.46904 * 111.00045 * 236.65966 * 11 10 9 13 13 C 1.53000 * 109.46800 * 290.12836 * 12 11 10 14 14 C 1.50704 * 109.47176 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99349 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00324 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99814 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00002 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47166 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46904 * 119.99680 * 18 16 14 21 21 H 1.48497 * 109.47033 * 239.99583 * 18 16 14 22 22 H 1.09000 * 109.46687 * 59.99690 * 1 2 3 23 23 H 1.09000 * 109.46469 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46663 * 299.99852 * 1 2 3 25 25 H 1.08993 * 109.46900 * 240.00363 * 2 1 3 26 26 H 1.09002 * 109.46744 * 119.99763 * 2 1 3 27 27 H 1.09005 * 109.46899 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46941 * 299.99565 * 4 3 2 29 29 H 1.08999 * 109.47468 * 60.00117 * 4 3 2 30 30 H 1.08993 * 109.47546 * 300.00123 * 5 3 2 31 31 H 1.09000 * 109.47362 * 60.00547 * 5 3 2 32 32 H 1.09005 * 109.47283 * 179.97438 * 5 3 2 33 33 H 1.08995 * 110.98807 * 322.18869 * 8 6 3 34 34 H 1.08997 * 110.99078 * 86.00902 * 8 6 3 35 35 H 1.09005 * 110.67856 * 277.17709 * 9 8 6 36 36 H 1.08997 * 110.84583 * 153.86033 * 9 8 6 37 37 H 1.09002 * 109.89036 * 218.40745 * 10 9 8 38 38 H 1.09003 * 109.88743 * 97.38054 * 10 9 8 39 39 H 1.09004 * 109.46973 * 50.12514 * 12 11 10 40 40 H 1.08996 * 109.47528 * 170.13051 * 12 11 10 41 41 H 1.08997 * 109.47444 * 299.99462 * 13 12 11 42 42 H 1.08999 * 109.47770 * 60.00095 * 13 12 11 43 43 H 0.97001 * 119.99824 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5301 2.1637 -1.2492 6 6 3.5700 1.4425 -0.0006 7 1 3.9485 0.8972 -0.8653 8 6 4.1099 0.8200 1.3112 9 6 5.5211 1.4633 1.4091 10 6 5.2939 2.8803 0.8415 11 7 4.0848 2.8285 -0.0006 12 6 4.3752 3.2822 -1.3673 13 6 4.6464 4.7879 -1.3579 14 6 4.9449 5.2534 -2.7598 15 1 4.9420 4.5458 -3.5757 16 6 5.2229 6.5821 -3.0006 17 7 5.2270 7.4436 -2.0068 18 14 5.5937 7.1588 -4.7383 19 1 5.5258 6.0032 -5.6684 20 1 4.5948 8.1799 -5.1446 21 1 6.9543 7.7520 -4.7832 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8930 3.1916 1.2491 28 1 0.4400 2.1637 1.2493 29 1 1.8934 1.6499 2.1393 30 1 1.8933 1.6500 -2.1392 31 1 0.4401 2.1638 -1.2492 32 1 1.8930 3.1916 -1.2490 33 1 3.4925 1.1068 2.1624 34 1 4.1794 -0.2646 1.2289 35 1 6.2378 0.9139 0.7987 36 1 5.8539 1.5123 2.4459 37 1 6.1520 3.1808 0.2402 38 1 5.1473 3.5876 1.6578 39 1 5.2524 2.7573 -1.7456 40 1 3.5203 3.0710 -2.0096 41 1 3.7692 5.3128 -0.9796 42 1 5.5013 4.9992 -0.7156 43 1 5.4222 8.3785 -2.1763 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156763303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:00 Heat of formation + Delta-G solvation = -21.934856 kcal Electronic energy + Delta-G solvation = -18410.548834 eV Core-core repulsion = 15875.635415 eV Total energy + Delta-G solvation = -2534.913419 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.62609 -36.16750 -33.57321 -31.80516 -30.30644 -28.33876 -27.65582 -26.92354 -24.44499 -23.86365 -21.32536 -20.93510 -19.37721 -17.94498 -16.35931 -16.10937 -15.05247 -14.51944 -14.44497 -14.13816 -13.77264 -13.29254 -13.16658 -12.84214 -12.43492 -12.09243 -11.97345 -11.70541 -11.45257 -11.40884 -11.30802 -11.04276 -10.94300 -10.85108 -10.64447 -10.55012 -10.44211 -10.20472 -10.03229 -9.92176 -9.66890 -9.19879 -9.05331 -8.30454 -7.58158 -5.96016 -3.98101 3.32790 3.40204 3.44177 4.40505 4.54829 4.88759 4.91880 5.14735 5.20477 5.23510 5.31340 5.40028 5.49949 5.64375 5.65592 5.75244 5.85637 5.87721 5.99999 6.04543 6.08488 6.12581 6.16493 6.18815 6.26237 6.32900 6.34327 6.40146 6.48255 6.53636 6.57376 6.65142 6.82850 6.90771 7.08782 7.62982 7.64627 7.86315 7.96552 8.15727 8.48988 9.09941 9.65474 11.15362 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.028090 B = 0.006095 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.547298 B = 4593.085292 C = 5158.799105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.113 4.113 3 C -0.045 4.045 4 C -0.135 4.135 5 C -0.146 4.146 6 C 0.081 3.919 7 H 0.046 0.954 8 C -0.128 4.128 9 C -0.143 4.143 10 C 0.047 3.953 11 N -0.519 5.519 12 C 0.052 3.948 13 C 0.030 3.970 14 C -0.520 4.520 15 H 0.053 0.947 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.890 3.110 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.285 1.285 22 H 0.057 0.943 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.016 0.984 40 H 0.068 0.932 41 H 0.023 0.977 42 H 0.014 0.986 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 -14.296 6.621 16.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.045 4.045 4 C -0.192 4.192 5 C -0.203 4.203 6 C -0.027 4.027 7 H 0.064 0.936 8 C -0.166 4.166 9 C -0.181 4.181 10 C -0.082 4.082 11 N -0.243 5.243 12 C -0.075 4.075 13 C -0.007 4.007 14 C -0.559 4.559 15 H 0.071 0.929 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.718 3.282 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.088 0.912 39 H 0.034 0.966 40 H 0.087 0.913 41 H 0.041 0.959 42 H 0.032 0.968 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.968 -13.759 6.844 16.486 hybrid contribution 0.967 -0.107 -1.378 1.687 sum -5.000 -13.866 5.465 15.721 Atomic orbital electron populations 1.21870 0.96176 1.00816 1.02196 1.21585 0.95727 0.96527 1.01306 1.20372 0.93670 0.94045 0.96435 1.21863 0.99338 1.01900 0.96065 1.22037 0.99948 1.02222 0.96112 1.22521 0.94382 0.89632 0.96211 0.93647 1.22890 0.96178 0.98910 0.98573 1.22847 0.97072 0.97249 1.00964 1.22742 0.92560 0.95473 0.97377 1.63488 1.28246 1.19822 1.12763 1.22671 0.98370 0.99706 0.86785 1.19053 0.97183 0.88068 0.96406 1.21249 1.47312 0.93445 0.93848 0.92897 1.24984 0.95614 0.96902 0.96781 1.69989 1.49597 1.02926 1.30741 0.86579 0.77874 0.78727 0.85064 1.19819 1.21005 1.21082 0.92423 0.93524 0.92465 0.92583 0.92330 0.90990 0.93628 0.93374 0.93599 0.93280 0.90368 0.90250 0.91865 0.92157 0.91421 0.92437 0.91172 0.96620 0.91340 0.95859 0.96751 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.21 37.16 0.34 -1.23 16 2 C -0.11 -1.29 4.82 -26.73 -0.13 -1.41 16 3 C -0.04 -0.60 0.41 -154.51 -0.06 -0.67 16 4 C -0.13 -1.80 7.62 37.16 0.28 -1.52 16 5 C -0.15 -2.19 6.75 37.15 0.25 -1.94 16 6 C 0.08 1.22 1.83 -66.18 -0.12 1.09 16 7 H 0.05 0.72 7.81 -51.93 -0.41 0.32 16 8 C -0.13 -1.63 5.45 -24.45 -0.13 -1.76 16 9 C -0.14 -1.93 6.97 -24.77 -0.17 -2.10 16 10 C 0.05 0.79 6.20 -2.84 -0.02 0.78 16 11 N -0.52 -9.40 3.80 -223.38 -0.85 -10.25 16 12 C 0.05 1.10 3.86 -3.82 -0.01 1.09 16 13 C 0.03 0.80 5.00 -27.88 -0.14 0.66 16 14 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 15 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -27.18 13.29 55.43 0.74 -26.45 16 18 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.57 6.43 -51.93 -0.33 0.24 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.62 7.33 -51.93 -0.38 0.24 16 27 H 0.07 1.14 7.65 -51.93 -0.40 0.74 16 28 H 0.04 0.56 6.43 -51.93 -0.33 0.22 16 29 H 0.05 0.59 6.02 -51.93 -0.31 0.28 16 30 H 0.04 0.68 7.95 -51.93 -0.41 0.27 16 31 H 0.05 0.66 6.43 -51.93 -0.33 0.32 16 32 H 0.08 1.40 6.16 -51.93 -0.32 1.08 16 33 H 0.08 0.99 5.67 -51.93 -0.29 0.69 16 34 H 0.06 0.71 8.03 -51.93 -0.42 0.29 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.08 6.91 -51.93 -0.36 0.72 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.02 0.34 7.96 -51.93 -0.41 -0.07 16 40 H 0.07 1.44 5.28 -51.93 -0.27 1.17 16 41 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.01 0.40 7.14 -51.93 -0.37 0.03 16 43 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 315.16 15.07 4.75 4.75 Total: -1.00 -29.47 315.16 -8.48 -37.95 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -7.77 Total: -2.26 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: -0.33 Total: -20.61 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.11 Total: -36.69 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.47 -8.48 -37.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156763303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.016 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds