Wall clock time and date at job start Mon Mar 30 2020 17:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53000 * 109.46975 * 2 1 4 4 C 1.53004 * 109.46898 * 60.00152 * 3 2 1 5 5 C 1.52994 * 109.47123 * 299.99979 * 3 2 1 6 6 C 1.52997 * 109.47085 * 180.02562 * 3 2 1 7 7 H 1.09001 * 110.33395 * 57.74787 * 6 3 2 8 8 C 1.54916 * 110.37265 * 295.37491 * 6 3 2 9 9 C 1.55398 * 101.74107 * 204.18989 * 8 6 3 10 10 C 1.54322 * 102.90031 * 35.47831 * 9 8 6 11 11 N 1.47439 * 107.36952 * 337.89642 * 10 9 8 12 12 C 1.46904 * 111.00045 * 236.65966 * 11 10 9 13 13 C 1.53000 * 109.46800 * 290.12836 * 12 11 10 14 14 C 1.50704 * 109.47176 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99349 * 359.97438 * 14 13 12 16 16 C 1.37872 * 120.00324 * 180.02562 * 14 13 12 17 17 N 1.31518 * 119.99814 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00002 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47166 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.46904 * 119.99680 * 18 16 14 21 21 H 1.48497 * 109.47033 * 239.99583 * 18 16 14 22 22 H 1.09000 * 109.46687 * 59.99690 * 1 2 3 23 23 H 1.09000 * 109.46469 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46663 * 299.99852 * 1 2 3 25 25 H 1.08993 * 109.46900 * 240.00363 * 2 1 3 26 26 H 1.09002 * 109.46744 * 119.99763 * 2 1 3 27 27 H 1.09005 * 109.46899 * 180.02562 * 4 3 2 28 28 H 1.09002 * 109.46941 * 299.99565 * 4 3 2 29 29 H 1.08999 * 109.47468 * 60.00117 * 4 3 2 30 30 H 1.08993 * 109.47546 * 300.00123 * 5 3 2 31 31 H 1.09000 * 109.47362 * 60.00547 * 5 3 2 32 32 H 1.09005 * 109.47283 * 179.97438 * 5 3 2 33 33 H 1.08995 * 110.98807 * 322.18869 * 8 6 3 34 34 H 1.08997 * 110.99078 * 86.00902 * 8 6 3 35 35 H 1.09005 * 110.67856 * 277.17709 * 9 8 6 36 36 H 1.08997 * 110.84583 * 153.86033 * 9 8 6 37 37 H 1.09002 * 109.89036 * 218.40745 * 10 9 8 38 38 H 1.09003 * 109.88743 * 97.38054 * 10 9 8 39 39 H 1.09004 * 109.46973 * 50.12514 * 12 11 10 40 40 H 1.08996 * 109.47528 * 170.13051 * 12 11 10 41 41 H 1.08997 * 109.47444 * 299.99462 * 13 12 11 42 42 H 1.08999 * 109.47770 * 60.00095 * 13 12 11 43 43 H 0.97001 * 119.99824 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5301 2.1637 -1.2492 6 6 3.5700 1.4425 -0.0006 7 1 3.9485 0.8972 -0.8653 8 6 4.1099 0.8200 1.3112 9 6 5.5211 1.4633 1.4091 10 6 5.2939 2.8803 0.8415 11 7 4.0848 2.8285 -0.0006 12 6 4.3752 3.2822 -1.3673 13 6 4.6464 4.7879 -1.3579 14 6 4.9449 5.2534 -2.7598 15 1 4.9420 4.5458 -3.5757 16 6 5.2229 6.5821 -3.0006 17 7 5.2270 7.4436 -2.0068 18 14 5.5937 7.1588 -4.7383 19 1 5.5258 6.0032 -5.6684 20 1 4.5948 8.1799 -5.1446 21 1 6.9543 7.7520 -4.7832 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.8930 3.1916 1.2491 28 1 0.4400 2.1637 1.2493 29 1 1.8934 1.6499 2.1393 30 1 1.8933 1.6500 -2.1392 31 1 0.4401 2.1638 -1.2492 32 1 1.8930 3.1916 -1.2490 33 1 3.4925 1.1068 2.1624 34 1 4.1794 -0.2646 1.2289 35 1 6.2378 0.9139 0.7987 36 1 5.8539 1.5123 2.4459 37 1 6.1520 3.1808 0.2402 38 1 5.1473 3.5876 1.6578 39 1 5.2524 2.7573 -1.7456 40 1 3.5203 3.0710 -2.0096 41 1 3.7692 5.3128 -0.9796 42 1 5.5013 4.9992 -0.7156 43 1 5.4222 8.3785 -2.1763 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156763303.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:00 Heat of formation + Delta-G solvation = -38.403791 kcal Electronic energy + Delta-G solvation = -18411.262981 eV Core-core repulsion = 15875.635415 eV Total energy + Delta-G solvation = -2535.627566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.87865 -37.38169 -35.54718 -33.58521 -31.32412 -30.14269 -28.86953 -28.07812 -26.29965 -25.03726 -23.00119 -22.06695 -20.93372 -19.12044 -18.47670 -17.38816 -16.52870 -16.46933 -15.48651 -15.28738 -15.06115 -14.77149 -14.46720 -14.39928 -13.97274 -13.54529 -13.18580 -13.03970 -12.90574 -12.83049 -12.71418 -12.54141 -12.44265 -12.29305 -12.05212 -11.96698 -11.61945 -11.48565 -11.41695 -11.23353 -11.18301 -11.00675 -10.86673 -10.55994 -9.06238 -8.20989 -6.32581 1.37974 1.38651 1.51936 2.38979 3.12134 3.14966 3.73221 3.77915 4.07108 4.12088 4.17036 4.21848 4.44474 4.49814 4.53927 4.60504 4.63866 4.73490 4.78023 4.89743 4.97340 4.99474 5.02668 5.05316 5.06558 5.15199 5.19535 5.20822 5.28373 5.28884 5.39167 5.42188 5.46189 5.52233 5.67013 5.70259 5.75140 5.84670 6.13540 6.35850 6.40882 6.85050 7.36666 8.91429 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.028090 B = 0.006095 C = 0.005426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.547298 B = 4593.085292 C = 5158.799105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.043 4.043 4 C -0.130 4.130 5 C -0.143 4.143 6 C 0.076 3.924 7 H 0.039 0.961 8 C -0.117 4.117 9 C -0.133 4.133 10 C 0.041 3.959 11 N -0.529 5.529 12 C 0.073 3.927 13 C 0.042 3.958 14 C -0.543 4.543 15 H 0.057 0.943 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.277 1.277 22 H 0.050 0.950 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.038 0.962 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.040 0.960 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.030 0.970 38 H 0.062 0.938 39 H 0.009 0.991 40 H 0.070 0.930 41 H -0.011 1.011 42 H -0.013 1.013 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.127 -16.470 6.588 18.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.145 4.145 3 C -0.043 4.043 4 C -0.187 4.187 5 C -0.200 4.200 6 C -0.032 4.032 7 H 0.057 0.943 8 C -0.155 4.155 9 C -0.171 4.171 10 C -0.087 4.087 11 N -0.253 5.253 12 C -0.055 4.055 13 C 0.005 3.995 14 C -0.582 4.582 15 H 0.075 0.925 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.790 3.210 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.203 1.203 22 H 0.069 0.931 23 H 0.081 0.919 24 H 0.078 0.922 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.059 0.941 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.108 0.892 37 H 0.049 0.951 38 H 0.080 0.920 39 H 0.027 0.973 40 H 0.088 0.912 41 H 0.008 0.992 42 H 0.005 0.995 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.471 -15.954 6.819 18.517 hybrid contribution 1.106 0.606 -1.328 1.831 sum -5.365 -15.348 5.491 17.161 Atomic orbital electron populations 1.21859 0.95235 1.01850 1.02000 1.21532 0.96484 0.94339 1.02136 1.20391 0.92605 0.95758 0.95576 1.21806 1.00129 1.00065 0.96659 1.21982 1.00860 1.00071 0.97104 1.22678 0.95373 0.87559 0.97552 0.94297 1.22885 0.95219 1.00256 0.97129 1.22799 0.97957 0.94321 1.02037 1.22760 0.91158 0.98168 0.96654 1.63409 1.28742 1.22535 1.10581 1.22254 0.97968 0.96206 0.89072 1.18848 0.94366 0.91318 0.94998 1.21645 1.47625 0.94118 0.94773 0.92511 1.25958 0.95072 0.96959 1.01590 1.70127 1.50261 1.03434 1.33368 0.85394 0.77913 0.78426 0.79274 1.18645 1.20206 1.20253 0.93120 0.91910 0.92179 0.92495 0.90734 0.94252 0.92371 0.91713 0.93810 0.91816 0.94140 0.89440 0.89083 0.91624 0.89190 0.95109 0.91988 0.97289 0.91180 0.99210 0.99481 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.21 71.99 0.66 -1.99 16 2 C -0.11 -2.10 4.82 30.60 0.15 -1.95 16 3 C -0.04 -1.10 0.41 -52.18 -0.02 -1.12 16 4 C -0.13 -3.30 7.62 71.98 0.55 -2.75 16 5 C -0.14 -4.28 6.75 71.98 0.49 -3.80 16 6 C 0.08 2.21 1.83 45.39 0.08 2.29 16 7 H 0.04 1.19 7.81 -2.39 -0.02 1.17 16 8 C -0.12 -2.65 5.45 32.07 0.17 -2.47 16 9 C -0.13 -3.33 6.97 31.87 0.22 -3.11 16 10 C 0.04 1.42 6.20 86.65 0.54 1.96 16 11 N -0.53 -19.69 3.80 -860.63 -3.27 -22.96 16 12 C 0.07 3.25 3.86 86.30 0.33 3.59 16 13 C 0.04 2.36 5.00 29.85 0.15 2.51 16 14 C -0.54 -32.14 9.11 25.60 0.23 -31.90 16 15 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 16 C 0.00 0.12 5.46 84.65 0.46 0.58 16 17 N -0.93 -58.40 13.29 21.45 0.28 -58.11 16 18 Si 0.97 45.36 29.54 68.60 2.03 47.39 16 19 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H 0.05 0.95 6.43 -2.39 -0.02 0.93 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 1.02 6.43 -2.39 -0.02 1.00 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.26 7.33 -2.39 -0.02 1.24 16 27 H 0.04 1.25 7.65 -2.38 -0.02 1.24 16 28 H 0.06 1.32 6.43 -2.39 -0.02 1.30 16 29 H 0.06 1.42 6.02 -2.39 -0.01 1.40 16 30 H 0.04 1.29 7.95 -2.39 -0.02 1.27 16 31 H 0.06 1.68 6.43 -2.39 -0.02 1.66 16 32 H 0.04 1.51 6.16 -2.38 -0.01 1.49 16 33 H 0.09 1.87 5.67 -2.39 -0.01 1.85 16 34 H 0.09 1.63 8.03 -2.39 -0.02 1.61 16 35 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 37 H 0.03 1.22 6.91 -2.39 -0.02 1.20 16 38 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.01 0.41 7.96 -2.39 -0.02 0.39 16 40 H 0.07 3.08 5.28 -2.39 -0.01 3.07 16 41 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 42 H -0.01 -0.80 7.14 -2.39 -0.02 -0.81 16 43 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -65.89 315.16 4.01 -61.88 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.95 Total: 9.97 kcal Atomic # 6 Polarization: -42.18 SS G_CDS: 4.02 Total: -38.17 kcal Atomic # 7 Polarization: -78.09 SS G_CDS: -2.99 Total: -81.07 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -65.89 4.01 -61.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156763303.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.473 kcal (2) G-P(sol) polarization free energy of solvation -65.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds