Wall clock time and date at job start Mon Mar 30 2020 17:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47312 * 2 1 4 4 C 1.53001 * 109.47145 * 120.00646 * 2 1 3 5 5 C 1.52996 * 109.47014 * 64.99541 * 4 2 1 6 6 C 1.52999 * 109.46669 * 184.86055 * 5 4 2 7 7 H 1.09003 * 109.45730 * 55.91259 * 6 5 4 8 8 C 1.53033 * 109.46751 * 295.93512 * 6 5 4 9 9 C 1.53116 * 109.27938 * 180.80698 * 8 6 5 10 10 C 1.53113 * 109.16617 * 57.65675 * 9 8 6 11 11 C 1.53041 * 109.27536 * 302.34792 * 10 9 8 12 12 N 1.46844 * 109.52456 * 59.17595 * 11 10 9 13 13 C 1.46904 * 111.00220 * 174.16404 * 12 11 10 14 14 C 1.50696 * 109.47233 * 67.01099 * 13 12 11 15 15 H 1.08005 * 120.00093 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00113 * 179.97438 * 14 13 12 17 17 N 1.31514 * 120.00113 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00065 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.47114 * 89.99396 * 18 16 14 20 20 H 1.48497 * 109.47199 * 209.99650 * 18 16 14 21 21 H 1.48502 * 109.46929 * 329.99448 * 18 16 14 22 22 H 1.08998 * 109.46923 * 299.99688 * 1 2 3 23 23 H 1.09007 * 109.47180 * 59.98979 * 1 2 3 24 24 H 1.08994 * 109.47336 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46728 * 240.00755 * 2 1 3 26 26 H 1.08998 * 109.47491 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47839 * 300.00721 * 3 2 1 28 28 H 1.09010 * 109.46461 * 60.00313 * 3 2 1 29 29 H 1.09002 * 109.46848 * 304.99640 * 4 2 1 30 30 H 1.09003 * 109.46857 * 184.99976 * 4 2 1 31 31 H 1.08997 * 109.47128 * 64.86595 * 5 4 2 32 32 H 1.08993 * 109.47341 * 304.86068 * 5 4 2 33 33 H 1.09003 * 109.50028 * 60.86409 * 8 6 5 34 34 H 1.09006 * 109.53578 * 300.76887 * 8 6 5 35 35 H 1.09001 * 109.52348 * 297.74797 * 9 8 6 36 36 H 1.09005 * 109.57714 * 177.59543 * 9 8 6 37 37 H 1.08999 * 109.50709 * 182.40510 * 10 9 8 38 38 H 1.09000 * 109.50338 * 62.28099 * 10 9 8 39 39 H 1.09007 * 109.46162 * 299.15822 * 11 10 9 40 40 H 1.08998 * 109.45485 * 179.19030 * 11 10 9 41 41 H 1.08995 * 109.47440 * 187.01690 * 13 12 11 42 42 H 1.09001 * 109.46771 * 307.01978 * 13 12 11 43 43 H 0.97007 * 120.00174 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6352 -2.1955 1.1878 6 6 2.0384 -2.8897 2.4902 7 1 1.5926 -2.3644 3.3348 8 6 3.5626 -2.8729 2.6263 9 6 3.9624 -3.5863 3.9208 10 6 3.4137 -5.0155 3.8974 11 6 1.8937 -4.9702 3.7243 12 7 1.5627 -4.2790 2.4718 13 6 0.1196 -4.3377 2.2035 14 6 -0.6174 -3.5297 3.2404 15 1 -0.0686 -3.0229 4.0204 16 6 -1.9921 -3.4366 3.1926 17 7 -2.6353 -2.7319 4.0978 18 14 -2.9413 -4.3125 1.8431 19 1 -3.2979 -5.6809 2.2968 20 1 -4.1806 -3.5538 1.5371 21 1 -2.1000 -4.3993 0.6225 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5137 -0.8901 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8899 28 1 1.6767 1.9562 0.8901 29 1 1.6054 -0.2619 2.1369 30 1 3.1264 -0.6445 1.2950 31 1 2.1388 -2.6760 0.3490 32 1 0.5560 -2.2707 1.0550 33 1 3.9139 -1.8415 2.6557 34 1 4.0103 -3.3858 1.7750 35 1 3.5477 -3.0508 4.7749 36 1 5.0491 -3.6146 4.0016 37 1 3.6585 -5.5148 4.8348 38 1 3.8583 -5.5624 3.0660 39 1 1.4485 -4.4351 4.5632 40 1 1.5015 -5.9867 3.6928 41 1 -0.0828 -3.9294 1.2134 42 1 -0.2157 -5.3740 2.2448 43 1 -3.6026 -2.6667 4.0644 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159040331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:46 Heat of formation + Delta-G solvation = -50.106015 kcal Electronic energy + Delta-G solvation = -18544.426281 eV Core-core repulsion = 16008.291269 eV Total energy + Delta-G solvation = -2536.135012 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.34923 -37.52492 -35.43420 -33.83942 -33.32702 -29.56915 -29.00721 -27.99278 -25.41309 -24.96192 -22.99929 -21.61576 -20.78474 -20.48359 -18.68478 -16.92312 -16.35954 -16.03293 -15.99021 -15.51633 -14.97233 -14.78754 -14.65463 -14.51318 -14.07988 -13.60422 -13.56008 -13.20729 -13.06691 -12.87095 -12.71701 -12.51804 -12.26187 -12.19086 -12.02316 -11.82803 -11.64781 -11.56966 -11.47860 -11.39647 -11.34815 -10.94548 -10.79586 -10.63980 -8.91937 -8.30914 -6.34208 1.31747 1.33267 1.44883 2.32126 3.04513 3.29356 3.90946 3.96260 4.07162 4.10618 4.17397 4.20743 4.34068 4.58155 4.61216 4.63544 4.74424 4.81712 4.85290 4.86203 4.93421 4.96575 4.97185 5.04925 5.09306 5.11291 5.14783 5.20394 5.24120 5.24678 5.32715 5.36054 5.41095 5.45193 5.47211 5.58488 5.65276 5.71084 6.15310 6.41447 6.55636 6.72408 7.32045 8.85539 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.013826 B = 0.011314 C = 0.006952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.670571 B = 2474.165835 C = 4026.424541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.092 4.092 3 C -0.141 4.141 4 C -0.104 4.104 5 C -0.107 4.107 6 C 0.094 3.906 7 H 0.003 0.997 8 C -0.105 4.105 9 C -0.119 4.119 10 C -0.107 4.107 11 C 0.059 3.941 12 N -0.526 5.526 13 C 0.159 3.841 14 C -0.535 4.535 15 H 0.030 0.970 16 C 0.013 3.987 17 N -0.948 5.948 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.245 1.245 22 H 0.036 0.964 23 H 0.066 0.934 24 H 0.039 0.961 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.045 0.955 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.039 0.961 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.001 0.999 40 H 0.061 0.939 41 H 0.035 0.965 42 H 0.020 0.980 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.732 1.935 -7.770 15.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.198 4.198 4 C -0.142 4.142 5 C -0.144 4.144 6 C -0.014 4.014 7 H 0.021 0.979 8 C -0.142 4.142 9 C -0.157 4.157 10 C -0.144 4.144 11 C -0.070 4.070 12 N -0.249 5.249 13 C 0.031 3.969 14 C -0.574 4.574 15 H 0.048 0.952 16 C -0.184 4.184 17 N -0.588 5.588 18 Si 0.763 3.237 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.169 1.169 22 H 0.056 0.944 23 H 0.085 0.915 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.020 0.980 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.038 0.962 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.818 1.737 -8.099 15.261 hybrid contribution -1.855 0.192 0.907 2.074 sum 10.962 1.928 -7.192 13.252 Atomic orbital electron populations 1.21891 0.96637 1.01001 1.01178 1.21089 0.94797 0.96987 0.98138 1.21800 1.01423 0.94903 1.01703 1.21592 1.01045 0.94155 0.97374 1.21608 1.00865 0.95299 0.96666 1.21461 0.95257 0.88245 0.96464 0.97860 1.21660 0.93349 1.00839 0.98394 1.21581 1.01239 0.95658 0.97182 1.21563 0.93134 0.97457 1.02268 1.21961 0.96857 0.97721 0.90450 1.62435 1.14561 1.15057 1.32852 1.20069 0.85804 0.95315 0.95715 1.21802 0.92262 1.30836 1.12538 0.95173 1.25834 0.98880 0.95670 0.98048 1.70081 1.08686 1.42877 1.37199 0.85815 0.78302 0.78809 0.80736 1.19376 1.21009 1.16869 0.94439 0.91530 0.94236 0.90360 0.91490 0.91818 0.93610 0.94531 0.90236 0.91315 0.93384 0.90677 0.90573 0.94177 0.89432 0.90684 0.90465 0.98020 0.92066 0.94686 0.96203 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 8.95 71.98 0.64 -3.94 16 2 C -0.09 -2.42 2.92 -10.79 -0.03 -2.45 16 3 C -0.14 -3.03 9.19 71.98 0.66 -2.37 16 4 C -0.10 -3.14 4.29 30.59 0.13 -3.01 16 5 C -0.11 -3.84 4.26 30.59 0.13 -3.71 16 6 C 0.09 3.67 1.46 44.93 0.07 3.74 16 7 H 0.00 0.16 6.52 -2.39 -0.02 0.15 16 8 C -0.10 -3.09 5.09 30.64 0.16 -2.94 16 9 C -0.12 -3.32 6.00 30.67 0.18 -3.13 16 10 C -0.11 -3.13 6.09 30.65 0.19 -2.94 16 11 C 0.06 2.32 5.15 86.33 0.44 2.76 16 12 N -0.53 -22.09 4.69 -875.63 -4.11 -26.20 16 13 C 0.16 7.71 3.64 85.55 0.31 8.02 16 14 C -0.54 -30.84 8.12 25.60 0.21 -30.64 16 15 H 0.03 1.96 6.09 -2.91 -0.02 1.94 16 16 C 0.01 0.79 5.47 84.65 0.46 1.25 16 17 N -0.95 -59.91 13.96 21.45 0.30 -59.61 16 18 Si 0.94 44.74 27.47 68.60 1.88 46.62 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 21 H -0.25 -10.88 6.54 99.48 0.65 -10.22 16 22 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.04 1.38 6.47 -2.39 -0.02 1.36 16 25 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 2.01 6.80 -2.39 -0.02 2.00 16 31 H 0.07 2.24 8.14 -2.39 -0.02 2.23 16 32 H 0.05 2.05 4.22 -2.39 -0.01 2.04 16 33 H 0.07 1.97 6.69 -2.39 -0.02 1.95 16 34 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.00 0.07 7.09 -2.38 -0.02 0.05 16 40 H 0.06 2.37 8.05 -2.39 -0.02 2.35 16 41 H 0.04 1.70 5.35 -2.39 -0.01 1.69 16 42 H 0.02 0.97 7.47 -2.39 -0.02 0.95 16 43 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -65.41 316.41 2.51 -62.90 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.88 Total: 15.64 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 3.55 Total: -39.35 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -3.81 Total: -85.81 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.62 kcal Total: -65.41 2.51 -62.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159040331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.790 kcal (2) G-P(sol) polarization free energy of solvation -65.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds