Wall clock time and date at job start Mon Mar 30 2020 17:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47111 * 2 1 4 4 C 1.53004 * 109.47111 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47178 * 179.97438 * 4 3 2 6 6 H 1.08994 * 110.01719 * 304.73276 * 5 4 3 7 7 C 1.54266 * 110.02896 * 66.17248 * 5 4 3 8 8 C 1.54888 * 104.19575 * 142.89541 * 7 5 4 9 9 C 1.54890 * 102.74784 * 322.05694 * 8 7 5 10 10 C 1.53873 * 110.02944 * 183.33894 * 5 4 3 11 11 H 1.09004 * 110.03168 * 121.38857 * 10 5 4 12 12 N 1.46896 * 110.03637 * 359.97438 * 10 5 4 13 13 C 1.46902 * 110.99975 * 167.89423 * 12 10 5 14 14 C 1.53004 * 109.47074 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47026 * 180.02562 * 14 13 12 16 16 H 1.07997 * 120.00059 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99456 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00343 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99583 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47084 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46875 * 119.99881 * 19 17 15 22 22 H 1.48500 * 109.47146 * 239.99903 * 19 17 15 23 23 H 1.08999 * 109.46759 * 300.00035 * 1 2 3 24 24 H 1.09002 * 109.46830 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47318 * 59.99516 * 1 2 3 26 26 H 1.08996 * 109.47318 * 120.00484 * 2 1 3 27 27 H 1.08999 * 109.46759 * 239.99965 * 2 1 3 28 28 H 1.08996 * 109.47424 * 300.00419 * 3 2 1 29 29 H 1.08999 * 109.47338 * 60.00320 * 3 2 1 30 30 H 1.08996 * 109.47318 * 300.00484 * 4 3 2 31 31 H 1.08999 * 109.47043 * 60.00432 * 4 3 2 32 32 H 1.09001 * 110.48653 * 261.57033 * 7 5 4 33 33 H 1.09000 * 110.48719 * 24.21411 * 7 5 4 34 34 H 1.08996 * 110.75695 * 203.74208 * 8 7 5 35 35 H 1.09005 * 110.91878 * 80.44027 * 8 7 5 36 36 H 1.09002 * 110.48739 * 279.26728 * 9 8 7 37 37 H 1.09002 * 110.48937 * 156.62301 * 9 8 7 38 38 H 1.00900 * 110.99401 * 43.94818 * 12 10 5 39 39 H 1.08999 * 109.47310 * 300.00654 * 13 12 10 40 40 H 1.09003 * 109.46773 * 60.00571 * 13 12 10 41 41 H 1.09005 * 109.46980 * 300.00372 * 14 13 12 42 42 H 1.08998 * 109.46839 * 60.00104 * 14 13 12 43 43 H 0.97000 * 120.00044 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8850 0.0000 6 1 3.6547 3.4307 -0.8421 7 6 3.7036 3.5791 1.3253 8 6 4.9235 4.4793 1.6424 9 6 6.1200 3.6040 1.1939 10 6 5.6165 2.9007 -0.0836 11 1 5.9367 3.4542 -0.9663 12 7 6.1317 1.5261 -0.1370 13 6 7.5543 1.5110 -0.5030 14 6 8.0538 0.0655 -0.5489 15 6 9.5133 0.0500 -0.9238 16 1 10.0326 0.9783 -1.1110 17 6 10.1853 -1.1493 -1.0287 18 7 9.5528 -2.2796 -0.8013 19 14 11.9944 -1.1685 -1.4941 20 1 12.4686 0.2243 -1.6951 21 1 12.7787 -1.8058 -0.4059 22 1 12.1741 -1.9394 -2.7506 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 -0.8899 26 1 1.8934 -0.5139 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.9330 0.9287 0.8908 31 1 3.9337 0.9285 -0.8891 32 1 2.8060 4.1841 1.1974 33 1 3.5584 2.8414 2.1144 34 1 4.9793 4.6921 2.7100 35 1 4.8845 5.4043 1.0671 36 1 6.3650 2.8703 1.9618 37 1 6.9859 4.2272 0.9702 38 1 5.5888 0.9610 -0.7726 39 1 7.6823 1.9706 -1.4830 40 1 8.1260 2.0699 0.2379 41 1 7.9257 -0.3945 0.4310 42 1 7.4820 -0.4931 -1.2899 43 1 10.0255 -3.1234 -0.8755 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184087039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:28 Heat of formation + Delta-G solvation = -58.409831 kcal Electronic energy + Delta-G solvation = -17411.642591 eV Core-core repulsion = 14875.147498 eV Total energy + Delta-G solvation = -2536.495093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 2.84 seconds Orbital eigenvalues (eV) -40.20765 -36.67153 -35.94754 -34.58507 -32.24909 -31.22532 -28.03111 -27.79648 -25.56074 -24.07889 -22.72921 -21.76970 -21.28381 -19.80289 -18.45464 -16.98154 -16.77783 -16.32616 -16.26013 -15.89854 -15.05024 -14.78056 -14.52981 -14.31760 -14.20095 -13.74041 -13.27809 -13.19713 -12.93780 -12.71515 -12.38840 -12.32824 -12.20830 -12.02973 -11.87040 -11.83900 -11.62595 -11.51929 -11.44869 -11.35119 -11.22683 -11.10460 -11.02032 -10.58196 -9.22036 -8.21619 -6.33353 1.38973 1.39661 1.53064 2.39476 3.11656 3.37686 3.67473 3.73994 3.91343 4.15900 4.24283 4.31917 4.45955 4.49303 4.53484 4.60440 4.63467 4.69181 4.75705 4.82072 4.85525 4.96940 5.03515 5.06331 5.07398 5.11578 5.18915 5.24743 5.27142 5.31058 5.36712 5.40981 5.46044 5.53664 5.56801 5.65894 5.66967 5.79271 6.16040 6.34960 6.60529 6.84004 7.36091 8.90803 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.022935 B = 0.004826 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.540301 B = 5800.447711 C = 6844.054658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C -0.110 4.110 4 C -0.104 4.104 5 C -0.083 4.083 6 H 0.079 0.921 7 C -0.107 4.107 8 C -0.117 4.117 9 C -0.117 4.117 10 C 0.078 3.922 11 H 0.029 0.971 12 N -0.687 5.687 13 C 0.084 3.916 14 C 0.034 3.966 15 C -0.545 4.545 16 H 0.058 0.942 17 C 0.001 3.999 18 N -0.931 5.931 19 Si 0.967 3.033 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.276 1.276 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.338 0.662 39 H 0.011 0.989 40 H 0.054 0.946 41 H -0.006 1.006 42 H -0.011 1.011 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.138 11.606 2.577 20.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C -0.148 4.148 4 C -0.142 4.142 5 C -0.102 4.102 6 H 0.097 0.903 7 C -0.145 4.145 8 C -0.154 4.154 9 C -0.155 4.155 10 C -0.032 4.032 11 H 0.047 0.953 12 N -0.321 5.321 13 C -0.045 4.045 14 C -0.004 4.004 15 C -0.584 4.584 16 H 0.076 0.924 17 C -0.196 4.196 18 N -0.571 5.571 19 Si 0.792 3.208 20 H -0.186 1.186 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.159 0.841 39 H 0.029 0.971 40 H 0.073 0.927 41 H 0.012 0.988 42 H 0.008 0.992 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.998 11.393 3.243 19.906 hybrid contribution 1.193 -0.422 -1.246 1.776 sum -14.804 10.971 1.997 18.534 Atomic orbital electron populations 1.21749 0.94946 1.01775 1.02099 1.21560 0.96576 0.97164 1.01473 1.21582 0.94292 0.96540 1.02338 1.21510 0.95560 0.95729 1.01404 1.21855 0.92458 0.96692 0.99194 0.90311 1.22361 0.98026 0.98167 0.95949 1.22441 0.93777 0.97800 1.01419 1.22412 0.98252 0.98032 0.96805 1.22299 0.95394 0.88468 0.96998 0.95280 1.60888 1.02815 1.11676 1.56687 1.21767 0.88534 0.97611 0.96599 1.18904 0.94589 0.91956 0.94931 1.21638 0.96649 0.92931 1.47147 0.92352 1.25974 1.03469 0.95115 0.95087 1.70113 1.38465 0.98165 1.50398 0.85367 0.78925 0.78576 0.77969 1.18649 1.20231 1.20182 0.92260 0.92726 0.92386 0.92804 0.92932 0.91725 0.91189 0.92447 0.93465 0.89978 0.91877 0.90746 0.90638 0.92448 0.92745 0.84060 0.97055 0.92709 0.98806 0.99245 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 71.98 0.71 -1.67 16 2 C -0.13 -2.59 5.93 30.59 0.18 -2.41 16 3 C -0.11 -2.12 5.05 30.59 0.15 -1.97 16 4 C -0.10 -2.54 3.44 30.60 0.11 -2.43 16 5 C -0.08 -1.93 2.95 -10.07 -0.03 -1.96 16 6 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 7 C -0.11 -2.11 5.45 31.67 0.17 -1.93 16 8 C -0.12 -2.37 6.91 31.88 0.22 -2.15 16 9 C -0.12 -3.24 5.84 31.67 0.18 -3.06 16 10 C 0.08 2.31 3.21 45.64 0.15 2.46 16 11 H 0.03 0.89 8.03 -2.39 -0.02 0.87 16 12 N -0.69 -25.43 5.42 -487.81 -2.64 -28.07 16 13 C 0.08 3.73 5.45 86.30 0.47 4.20 16 14 C 0.03 1.86 5.23 29.85 0.16 2.02 16 15 C -0.55 -32.10 9.11 25.60 0.23 -31.87 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 17 C 0.00 0.09 5.46 84.65 0.46 0.55 16 18 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 19 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 1.22 7.45 -2.39 -0.02 1.20 16 30 H 0.06 1.64 7.85 -2.39 -0.02 1.62 16 31 H 0.05 1.27 6.42 -2.39 -0.02 1.26 16 32 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.06 1.32 7.79 -2.39 -0.02 1.30 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 35 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.06 1.83 8.05 -2.39 -0.02 1.81 16 37 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.34 12.34 6.07 -89.69 -0.54 11.80 16 39 H 0.01 0.50 8.11 -2.39 -0.02 0.48 16 40 H 0.05 2.44 7.65 -2.39 -0.02 2.43 16 41 H -0.01 -0.39 8.14 -2.38 -0.02 -0.41 16 42 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 43 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -64.15 332.80 3.22 -60.93 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: 0.38 Total: 17.87 kcal Atomic # 6 Polarization: -43.39 SS G_CDS: 3.17 Total: -40.21 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -2.36 Total: -85.69 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -64.15 3.22 -60.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184087039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.521 kcal (2) G-P(sol) polarization free energy of solvation -64.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.84 seconds