Wall clock time and date at job start Mon Mar 30 2020 17:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46955 * 2 1 4 4 C 1.53003 * 109.46827 * 185.15758 * 3 2 1 5 5 H 1.09003 * 109.46336 * 55.34202 * 4 3 2 6 6 C 1.53036 * 109.46353 * 295.37434 * 4 3 2 7 7 C 1.53113 * 109.27868 * 180.80688 * 6 4 3 8 8 C 1.53119 * 109.16443 * 57.65227 * 7 6 4 9 9 C 1.53040 * 109.27835 * 302.34760 * 8 7 6 10 10 N 1.46846 * 109.45937 * 175.32069 * 4 3 2 11 11 C 1.46901 * 111.00154 * 305.85226 * 10 4 3 12 12 H 1.09003 * 109.46529 * 56.94343 * 11 10 4 13 13 C 1.50697 * 109.47191 * 296.94436 * 11 10 4 14 14 H 1.08007 * 119.99913 * 354.23607 * 13 11 10 15 15 C 1.37874 * 119.99668 * 174.23911 * 13 11 10 16 16 N 1.31514 * 120.00671 * 359.63051 * 15 13 11 17 17 Si 1.86805 * 119.99766 * 179.62539 * 15 13 11 18 18 H 1.48503 * 109.47136 * 5.00927 * 17 15 13 19 19 H 1.48505 * 109.46669 * 125.00459 * 17 15 13 20 20 H 1.48500 * 109.47612 * 245.00703 * 17 15 13 21 21 C 1.53002 * 109.46862 * 176.94079 * 11 10 4 22 22 C 1.52998 * 109.47161 * 296.80989 * 21 11 10 23 23 H 1.09003 * 109.47065 * 295.12651 * 1 2 3 24 24 H 1.09001 * 109.47174 * 55.12795 * 1 2 3 25 25 H 1.08997 * 109.47281 * 175.13288 * 1 2 3 26 26 H 1.08999 * 109.46835 * 240.00143 * 2 1 3 27 27 H 1.08999 * 109.46811 * 120.00172 * 2 1 3 28 28 H 1.08999 * 109.47354 * 65.16113 * 3 2 1 29 29 H 1.09001 * 109.47056 * 305.15769 * 3 2 1 30 30 H 1.09008 * 109.50215 * 300.74578 * 6 4 3 31 31 H 1.09002 * 109.50799 * 60.86419 * 6 4 3 32 32 H 1.09004 * 109.52209 * 177.55980 * 7 6 4 33 33 H 1.09000 * 109.52158 * 297.74631 * 7 6 4 34 34 H 1.09000 * 109.50415 * 182.40312 * 8 7 6 35 35 H 1.09007 * 109.50108 * 62.28335 * 8 7 6 36 36 H 1.08997 * 109.45730 * 299.16203 * 9 8 7 37 37 H 1.09001 * 109.46118 * 179.19075 * 9 8 7 38 38 H 0.96998 * 120.00400 * 180.02562 * 16 15 13 39 39 H 1.08993 * 109.47004 * 56.81608 * 21 11 10 40 40 H 1.08999 * 109.46610 * 176.81289 * 21 11 10 41 41 H 1.09001 * 109.47238 * 305.11405 * 22 21 11 42 42 H 1.08993 * 109.47163 * 65.11285 * 22 21 11 43 43 H 1.09000 * 109.46866 * 185.11111 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4444 -0.1297 5 1 3.8540 0.8860 -1.0199 6 6 4.1823 0.7880 1.1070 7 6 5.7081 0.8102 0.9821 8 6 6.1779 2.2582 0.8175 9 6 5.5023 2.8721 -0.4108 10 7 4.0441 2.8278 -0.2423 11 6 3.3659 3.5326 -1.3383 12 1 2.2882 3.5020 -1.1780 13 6 3.6983 2.8639 -2.6473 14 1 4.4202 2.0610 -2.6755 15 6 3.0809 3.2771 -3.8087 16 7 2.1966 4.2498 -3.7733 17 14 3.5006 2.4552 -5.4329 18 1 4.4249 1.3189 -5.1884 19 1 2.2565 1.9532 -6.0696 20 1 4.1541 3.4401 -6.3319 21 6 3.8349 4.9885 -1.3758 22 6 3.4268 5.6892 -0.0783 23 1 -0.3633 0.4364 0.9304 24 1 -0.3633 0.5876 -0.8431 25 1 -0.3634 -1.0239 -0.0872 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7541 1.9290 0.9326 29 1 1.6031 1.9823 -0.8402 30 1 3.8821 1.3377 1.9991 31 1 3.8383 -0.2437 1.1817 32 1 6.1534 0.3827 1.8805 33 1 6.0109 0.2279 0.1119 34 1 7.2597 2.2771 0.6854 35 1 5.9091 2.8311 1.7051 36 1 5.7825 2.3070 -1.2997 37 1 5.8237 3.9077 -0.5225 38 1 1.7619 4.5403 -4.5904 39 1 4.9195 5.0183 -1.4793 40 1 3.3749 5.4966 -2.2233 41 1 2.3526 5.5807 0.0709 42 1 3.9575 5.2387 0.7603 43 1 3.6798 6.7476 -0.1420 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213426472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:50 Heat of formation + Delta-G solvation = -28.604088 kcal Electronic energy + Delta-G solvation = -18946.596256 eV Core-core repulsion = 16411.393638 eV Total energy + Delta-G solvation = -2535.202619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.83474 -34.79881 -34.26312 -31.86556 -30.73947 -29.95341 -26.62847 -25.78391 -23.58301 -22.71968 -21.59316 -19.98468 -19.51640 -18.64805 -16.10804 -15.44326 -14.71505 -14.40650 -14.20823 -13.67407 -13.29144 -13.12170 -12.95279 -12.71135 -12.59400 -12.02030 -11.75257 -11.40361 -11.30242 -11.16938 -10.91909 -10.81966 -10.63340 -10.60242 -10.38850 -10.31088 -10.15568 -9.90723 -9.72861 -9.63849 -9.37451 -9.16834 -8.87599 -8.29623 -6.99608 -5.95560 -4.06963 3.26751 3.35703 3.38911 4.42679 4.98382 5.29684 5.37583 5.40905 5.47690 5.52384 5.64318 5.70499 5.88063 6.12777 6.15181 6.18502 6.23208 6.28191 6.34528 6.39490 6.43295 6.47828 6.49304 6.52197 6.56145 6.66908 6.68400 6.73148 6.81536 6.93575 7.10764 7.11496 7.15864 7.24325 7.41299 7.69071 7.78014 8.02570 8.24614 8.42051 8.56020 9.04829 9.60146 11.04714 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.015851 B = 0.010492 C = 0.008670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.008417 B = 2668.167508 C = 3228.765390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.112 4.112 4 C 0.097 3.903 5 H 0.041 0.959 6 C -0.112 4.112 7 C -0.117 4.117 8 C -0.116 4.116 9 C 0.060 3.940 10 N -0.530 5.530 11 C 0.209 3.791 12 H 0.051 0.949 13 C -0.537 4.537 14 H 0.054 0.946 15 C 0.069 3.931 16 N -0.886 5.886 17 Si 0.881 3.119 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.284 1.284 21 C -0.109 4.109 22 C -0.136 4.136 23 H 0.049 0.951 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.259 0.741 39 H 0.034 0.966 40 H 0.080 0.920 41 H 0.040 0.960 42 H 0.047 0.953 43 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.995 -4.979 8.089 9.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.149 4.149 4 C -0.012 4.012 5 H 0.059 0.941 6 C -0.150 4.150 7 C -0.155 4.155 8 C -0.154 4.154 9 C -0.069 4.069 10 N -0.254 5.254 11 C 0.103 3.897 12 H 0.069 0.931 13 C -0.576 4.576 14 H 0.072 0.928 15 C -0.133 4.133 16 N -0.525 5.525 17 Si 0.709 3.291 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.148 4.148 22 C -0.194 4.194 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.066 0.934 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 1.754 -4.622 8.409 9.755 hybrid contribution 0.437 -0.835 -1.877 2.100 sum 2.192 -5.457 6.532 8.789 Atomic orbital electron populations 1.21757 0.96564 1.00672 1.01684 1.21527 0.95211 0.98017 1.01105 1.21668 0.95286 0.95426 1.02535 1.21321 0.93880 0.90465 0.95494 0.94108 1.21695 0.94659 0.99418 0.99196 1.21539 0.96530 0.97082 1.00357 1.21624 0.98380 0.95803 0.99634 1.21910 0.89727 1.00188 0.95066 1.62387 1.03618 1.13024 1.46383 1.19374 0.94829 0.89593 0.85874 0.93130 1.21753 1.24104 1.18359 0.93390 0.92784 1.24883 0.94881 0.94898 0.98643 1.69918 1.27031 1.27807 1.27704 0.86717 0.78121 0.79618 0.84602 1.20027 1.21133 1.21061 1.21601 0.98653 0.98041 0.96491 1.21691 1.00408 0.97587 0.99707 0.93228 0.92542 0.93623 0.92424 0.92806 0.92700 0.90016 0.92054 0.92703 0.93169 0.92827 0.93030 0.92049 0.94939 0.91283 0.93064 0.94732 0.90203 0.94083 0.93438 0.95730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 37.16 0.37 -1.74 16 2 C -0.12 -1.88 5.55 -26.73 -0.15 -2.03 16 3 C -0.11 -2.05 4.42 -26.73 -0.12 -2.17 16 4 C 0.10 1.86 1.54 -67.72 -0.10 1.76 16 5 H 0.04 0.89 6.96 -51.93 -0.36 0.53 16 6 C -0.11 -1.78 5.10 -26.65 -0.14 -1.92 16 7 C -0.12 -1.77 6.00 -26.61 -0.16 -1.93 16 8 C -0.12 -1.86 6.09 -26.65 -0.16 -2.02 16 9 C 0.06 1.16 4.80 -3.83 -0.02 1.14 16 10 N -0.53 -10.95 3.96 -220.13 -0.87 -11.82 16 11 C 0.21 5.01 1.24 -68.86 -0.09 4.93 16 12 H 0.05 1.34 5.93 -51.93 -0.31 1.03 16 13 C -0.54 -14.10 7.10 -34.44 -0.24 -14.35 16 14 H 0.05 1.46 5.86 -52.48 -0.31 1.15 16 15 C 0.07 1.87 5.31 -17.82 -0.09 1.77 16 16 N -0.89 -24.72 11.76 55.43 0.65 -24.07 16 17 Si 0.88 21.16 29.54 -169.99 -5.02 16.14 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 21 C -0.11 -2.55 5.00 -26.73 -0.13 -2.69 16 22 C -0.14 -2.76 9.72 37.16 0.36 -2.40 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.75 6.83 -51.93 -0.35 0.40 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.78 5.99 -51.93 -0.31 1.47 16 30 H 0.06 0.98 8.14 -51.92 -0.42 0.55 16 31 H 0.05 0.80 6.72 -51.93 -0.35 0.45 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.03 0.70 6.63 -51.93 -0.34 0.35 16 37 H 0.07 1.38 5.91 -51.93 -0.31 1.07 16 38 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 39 H 0.03 0.79 6.09 -51.93 -0.32 0.47 16 40 H 0.08 2.09 6.49 -51.93 -0.34 1.75 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.92 7.85 -51.93 -0.41 0.51 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -26.48 315.65 -9.07 -35.55 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.91 Total: 1.09 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -0.68 Total: -21.65 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.22 Total: -35.89 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.48 -9.07 -35.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213426472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.948 kcal (2) G-P(sol) polarization free energy of solvation -26.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds