Wall clock time and date at job start Mon Mar 30 2020 17:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46955 * 2 1 4 4 C 1.53003 * 109.46827 * 185.15758 * 3 2 1 5 5 H 1.09003 * 109.46336 * 55.34202 * 4 3 2 6 6 C 1.53036 * 109.46353 * 295.37434 * 4 3 2 7 7 C 1.53113 * 109.27868 * 180.80688 * 6 4 3 8 8 C 1.53119 * 109.16443 * 57.65227 * 7 6 4 9 9 C 1.53040 * 109.27835 * 302.34760 * 8 7 6 10 10 N 1.46846 * 109.45937 * 175.32069 * 4 3 2 11 11 C 1.46901 * 111.00154 * 305.85226 * 10 4 3 12 12 H 1.09003 * 109.46529 * 56.94343 * 11 10 4 13 13 C 1.50697 * 109.47191 * 296.94436 * 11 10 4 14 14 H 1.08007 * 119.99913 * 354.23607 * 13 11 10 15 15 C 1.37874 * 119.99668 * 174.23911 * 13 11 10 16 16 N 1.31514 * 120.00671 * 359.63051 * 15 13 11 17 17 Si 1.86805 * 119.99766 * 179.62539 * 15 13 11 18 18 H 1.48503 * 109.47136 * 5.00927 * 17 15 13 19 19 H 1.48505 * 109.46669 * 125.00459 * 17 15 13 20 20 H 1.48500 * 109.47612 * 245.00703 * 17 15 13 21 21 C 1.53002 * 109.46862 * 176.94079 * 11 10 4 22 22 C 1.52998 * 109.47161 * 296.80989 * 21 11 10 23 23 H 1.09003 * 109.47065 * 295.12651 * 1 2 3 24 24 H 1.09001 * 109.47174 * 55.12795 * 1 2 3 25 25 H 1.08997 * 109.47281 * 175.13288 * 1 2 3 26 26 H 1.08999 * 109.46835 * 240.00143 * 2 1 3 27 27 H 1.08999 * 109.46811 * 120.00172 * 2 1 3 28 28 H 1.08999 * 109.47354 * 65.16113 * 3 2 1 29 29 H 1.09001 * 109.47056 * 305.15769 * 3 2 1 30 30 H 1.09008 * 109.50215 * 300.74578 * 6 4 3 31 31 H 1.09002 * 109.50799 * 60.86419 * 6 4 3 32 32 H 1.09004 * 109.52209 * 177.55980 * 7 6 4 33 33 H 1.09000 * 109.52158 * 297.74631 * 7 6 4 34 34 H 1.09000 * 109.50415 * 182.40312 * 8 7 6 35 35 H 1.09007 * 109.50108 * 62.28335 * 8 7 6 36 36 H 1.08997 * 109.45730 * 299.16203 * 9 8 7 37 37 H 1.09001 * 109.46118 * 179.19075 * 9 8 7 38 38 H 0.96998 * 120.00400 * 180.02562 * 16 15 13 39 39 H 1.08993 * 109.47004 * 56.81608 * 21 11 10 40 40 H 1.08999 * 109.46610 * 176.81289 * 21 11 10 41 41 H 1.09001 * 109.47238 * 305.11405 * 22 21 11 42 42 H 1.08993 * 109.47163 * 65.11285 * 22 21 11 43 43 H 1.09000 * 109.46866 * 185.11111 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4444 -0.1297 5 1 3.8540 0.8860 -1.0199 6 6 4.1823 0.7880 1.1070 7 6 5.7081 0.8102 0.9821 8 6 6.1779 2.2582 0.8175 9 6 5.5023 2.8721 -0.4108 10 7 4.0441 2.8278 -0.2423 11 6 3.3659 3.5326 -1.3383 12 1 2.2882 3.5020 -1.1780 13 6 3.6983 2.8639 -2.6473 14 1 4.4202 2.0610 -2.6755 15 6 3.0809 3.2771 -3.8087 16 7 2.1966 4.2498 -3.7733 17 14 3.5006 2.4552 -5.4329 18 1 4.4249 1.3189 -5.1884 19 1 2.2565 1.9532 -6.0696 20 1 4.1541 3.4401 -6.3319 21 6 3.8349 4.9885 -1.3758 22 6 3.4268 5.6892 -0.0783 23 1 -0.3633 0.4364 0.9304 24 1 -0.3633 0.5876 -0.8431 25 1 -0.3634 -1.0239 -0.0872 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.7541 1.9290 0.9326 29 1 1.6031 1.9823 -0.8402 30 1 3.8821 1.3377 1.9991 31 1 3.8383 -0.2437 1.1817 32 1 6.1534 0.3827 1.8805 33 1 6.0109 0.2279 0.1119 34 1 7.2597 2.2771 0.6854 35 1 5.9091 2.8311 1.7051 36 1 5.7825 2.3070 -1.2997 37 1 5.8237 3.9077 -0.5225 38 1 1.7619 4.5403 -4.5904 39 1 4.9195 5.0183 -1.4793 40 1 3.3749 5.4966 -2.2233 41 1 2.3526 5.5807 0.0709 42 1 3.9575 5.2387 0.7603 43 1 3.6798 6.7476 -0.1420 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213426472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:49 Heat of formation + Delta-G solvation = -42.085493 kcal Electronic energy + Delta-G solvation = -18947.180854 eV Core-core repulsion = 16411.393638 eV Total energy + Delta-G solvation = -2535.787217 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.41488 -36.49018 -35.65094 -33.84157 -32.28840 -31.40486 -28.47816 -27.24260 -25.34383 -24.31477 -23.00192 -21.41338 -21.11712 -20.39589 -18.08302 -17.18551 -16.27263 -16.06969 -15.74692 -15.07537 -14.96697 -14.67768 -14.42535 -14.38020 -13.92168 -13.49822 -13.32239 -13.08550 -13.03745 -12.83775 -12.66474 -12.46467 -12.15988 -12.06646 -11.98484 -11.78504 -11.60837 -11.53108 -11.44600 -11.26593 -11.08007 -10.82656 -10.57762 -10.31849 -8.81771 -8.01018 -6.21505 1.31671 1.35310 1.43903 2.39336 3.17817 3.43107 4.03347 4.06205 4.17223 4.24990 4.36233 4.45637 4.48796 4.58307 4.71594 4.73460 4.82174 4.85317 4.90727 4.92081 5.01480 5.06598 5.14150 5.16991 5.19502 5.23177 5.30394 5.33619 5.36136 5.39588 5.45868 5.52887 5.54281 5.61327 5.65675 5.71527 5.84744 6.06444 6.30168 6.47553 6.83136 7.02891 7.48557 8.94223 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.015851 B = 0.010492 C = 0.008670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.008417 B = 2668.167508 C = 3228.765390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.105 4.105 4 C 0.096 3.904 5 H 0.008 0.992 6 C -0.104 4.104 7 C -0.116 4.116 8 C -0.109 4.109 9 C 0.059 3.941 10 N -0.525 5.525 11 C 0.217 3.783 12 H 0.021 0.979 13 C -0.539 4.539 14 H 0.041 0.959 15 C 0.024 3.976 16 N -0.911 5.911 17 Si 0.936 3.064 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.280 1.280 21 C -0.105 4.105 22 C -0.123 4.123 23 H 0.061 0.939 24 H 0.035 0.965 25 H 0.067 0.933 26 H 0.044 0.956 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.005 0.995 37 H 0.061 0.939 38 H 0.259 0.741 39 H 0.033 0.967 40 H 0.047 0.953 41 H 0.033 0.967 42 H 0.058 0.942 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.836 -6.157 9.958 12.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.142 4.142 4 C -0.013 4.013 5 H 0.026 0.974 6 C -0.142 4.142 7 C -0.153 4.153 8 C -0.147 4.147 9 C -0.069 4.069 10 N -0.249 5.249 11 C 0.110 3.890 12 H 0.039 0.961 13 C -0.579 4.579 14 H 0.059 0.941 15 C -0.176 4.176 16 N -0.551 5.551 17 Si 0.763 3.237 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.206 1.206 21 C -0.144 4.144 22 C -0.180 4.180 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.086 0.914 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.079 0.921 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.023 0.977 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.077 0.923 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.604 -5.808 10.285 12.095 hybrid contribution 0.180 -0.469 -2.458 2.509 sum 2.784 -6.277 7.827 10.412 Atomic orbital electron populations 1.21734 0.95396 1.01818 1.01464 1.21489 0.96250 0.95855 1.01699 1.21568 0.94790 0.97066 1.00807 1.21417 0.94551 0.89263 0.96103 0.97413 1.21646 0.95251 1.00154 0.97143 1.21552 0.95825 0.96401 1.01558 1.21579 0.99204 0.96225 0.97645 1.21958 0.89080 0.99708 0.96175 1.62389 1.04257 1.13916 1.44322 1.19110 0.93486 0.90366 0.86014 0.96107 1.21941 1.23335 1.17843 0.94762 0.94106 1.25515 0.95042 0.95564 1.01461 1.70026 1.27902 1.28885 1.28282 0.85856 0.77839 0.78731 0.81302 1.20013 1.20807 1.20631 1.21460 0.98170 0.97684 0.97071 1.21538 0.99935 0.98512 0.98055 0.91982 0.94620 0.91424 0.93680 0.90190 0.92080 0.94415 0.91248 0.90705 0.89893 0.93660 0.90975 0.91151 0.97679 0.92081 0.93124 0.94809 0.93411 0.94819 0.92307 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.91 71.98 0.71 -3.26 16 2 C -0.12 -3.46 5.55 30.59 0.17 -3.29 16 3 C -0.10 -3.89 4.42 30.60 0.14 -3.75 16 4 C 0.10 3.65 1.54 44.94 0.07 3.72 16 5 H 0.01 0.35 6.96 -2.39 -0.02 0.33 16 6 C -0.10 -3.05 5.10 30.64 0.16 -2.89 16 7 C -0.12 -3.13 6.00 30.67 0.18 -2.95 16 8 C -0.11 -3.19 6.09 30.65 0.19 -3.00 16 9 C 0.06 2.29 4.80 86.33 0.41 2.71 16 10 N -0.52 -21.86 3.96 -850.36 -3.37 -25.23 16 11 C 0.22 10.79 1.24 44.17 0.05 10.84 16 12 H 0.02 1.17 5.93 -2.39 -0.01 1.16 16 13 C -0.54 -29.48 7.10 25.60 0.18 -29.30 16 14 H 0.04 2.30 5.86 -2.91 -0.02 2.28 16 15 C 0.02 1.32 5.31 84.65 0.45 1.77 16 16 N -0.91 -52.68 11.76 21.45 0.25 -52.43 16 17 Si 0.94 44.53 29.54 68.60 2.03 46.55 16 18 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 19 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 21 C -0.11 -5.03 5.00 30.59 0.15 -4.88 16 22 C -0.12 -4.91 9.72 71.98 0.70 -4.21 16 23 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.08 2.01 6.83 -2.39 -0.02 1.99 16 28 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.04 1.73 5.99 -2.39 -0.01 1.71 16 30 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.07 1.91 6.72 -2.39 -0.02 1.89 16 32 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 36 H 0.00 0.22 6.63 -2.39 -0.02 0.20 16 37 H 0.06 2.43 5.91 -2.39 -0.01 2.41 16 38 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 39 H 0.03 1.58 6.09 -2.39 -0.01 1.56 16 40 H 0.05 2.58 6.49 -2.39 -0.02 2.56 16 41 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 42 H 0.06 2.20 7.85 -2.39 -0.02 2.18 16 43 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -59.01 315.65 3.42 -55.59 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: 0.94 Total: 14.01 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 3.57 Total: -38.49 kcal Atomic # 7 Polarization: -74.54 SS G_CDS: -3.12 Total: -77.66 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -59.01 3.42 -55.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213426472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.505 kcal (2) G-P(sol) polarization free energy of solvation -59.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds