Wall clock time and date at job start Mon Mar 30 2020 17:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99961 * 2 1 4 4 H 1.08991 * 109.50980 * 329.92531 * 3 2 1 5 5 C 1.53119 * 109.50267 * 90.00581 * 3 2 1 6 6 C 1.53120 * 109.16255 * 177.59445 * 5 3 2 7 7 C 1.53035 * 109.27582 * 302.34075 * 6 5 3 8 8 N 1.46852 * 109.52234 * 59.18194 * 7 6 5 9 9 C 1.46898 * 111.00190 * 174.15564 * 8 7 6 10 10 C 1.53000 * 109.47011 * 285.90211 * 9 8 7 11 11 C 1.50704 * 115.55074 * 148.21955 * 10 9 8 12 12 H 1.08000 * 120.00167 * 144.67693 * 11 10 9 13 13 C 1.37874 * 119.99711 * 324.67691 * 11 10 9 14 14 N 1.31510 * 120.00150 * 345.71267 * 13 11 10 15 15 Si 1.86807 * 119.99936 * 165.71367 * 13 11 10 16 16 H 1.48499 * 109.47093 * 59.99900 * 15 13 11 17 17 H 1.48499 * 109.46959 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46962 * 299.99922 * 15 13 11 19 19 C 1.52997 * 117.50320 * 2.50551 * 10 9 8 20 20 C 1.53000 * 60.00226 * 252.51539 * 19 10 9 21 21 C 1.46842 * 111.19703 * 298.25650 * 8 7 6 22 22 H 1.08997 * 109.47218 * 59.99644 * 1 2 3 23 23 H 1.08994 * 109.47360 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46446 * 299.99660 * 1 2 3 25 25 H 1.09004 * 109.52306 * 57.68663 * 5 3 2 26 26 H 1.09001 * 109.52362 * 297.50363 * 5 3 2 27 27 H 1.09001 * 109.50208 * 62.28538 * 6 5 3 28 28 H 1.09000 * 109.50060 * 182.40207 * 6 5 3 29 29 H 1.09004 * 109.45876 * 179.19226 * 7 6 5 30 30 H 1.08993 * 109.46656 * 299.16570 * 7 6 5 31 31 H 1.09008 * 109.46918 * 45.89592 * 9 8 7 32 32 H 1.08990 * 109.47202 * 165.89747 * 9 8 7 33 33 H 0.97000 * 120.00146 * 185.01155 * 14 13 11 34 34 H 1.08998 * 117.49664 * 0.02562 * 19 10 9 35 35 H 1.08998 * 117.49806 * 145.02256 * 19 10 9 36 36 H 1.08996 * 117.49548 * 252.51230 * 20 19 10 37 37 H 1.08997 * 117.49933 * 107.48872 * 20 19 10 38 38 H 1.09004 * 109.46379 * 301.72338 * 21 8 7 39 39 H 1.08999 * 109.45687 * 181.75406 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3461 1.9996 -0.5148 5 6 2.2183 1.7724 1.4433 6 6 2.8960 3.1454 1.4347 7 6 4.2217 3.0496 0.6761 8 7 3.9689 2.5999 -0.6988 9 6 5.2016 2.6291 -1.4973 10 6 5.5548 4.0784 -1.8373 11 6 7.0270 4.3777 -1.9571 12 1 7.3748 5.0946 -2.6861 13 6 7.9298 3.7363 -1.1358 14 7 7.5064 3.0867 -0.0737 15 14 9.7547 3.7902 -1.5317 16 1 10.2177 5.2012 -1.5412 17 1 10.5072 3.0297 -0.5020 18 1 9.9897 3.1832 -2.8664 19 6 4.6540 5.1770 -1.2696 20 6 4.6018 4.8396 -2.7610 21 6 3.3616 1.2631 -0.7170 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 2.8504 1.0574 1.9700 26 1 1.2534 1.8455 1.9452 27 1 2.2462 3.8688 0.9422 28 1 3.0854 3.4642 2.4597 29 1 4.7000 4.0289 0.6557 30 1 4.8761 2.3363 1.1770 31 1 6.0151 2.1813 -0.9262 32 1 5.0514 2.0660 -2.4183 33 1 8.1454 2.6974 0.5435 34 1 3.8099 4.8673 -0.6534 35 1 5.1261 6.1165 -0.9824 36 1 5.0395 5.5572 -3.4549 37 1 3.7232 4.3079 -3.1263 38 1 4.0200 0.5581 -0.2096 39 1 3.2152 0.9449 -1.7492 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230249698.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:54:04 Heat of formation + Delta-G solvation = -13.023846 kcal Electronic energy + Delta-G solvation = -18257.100471 eV Core-core repulsion = 15586.740368 eV Total energy + Delta-G solvation = -2670.360103 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.10010 -37.32969 -35.39812 -32.17917 -31.95091 -29.70969 -26.42274 -26.16878 -25.17752 -22.48536 -22.06024 -20.79566 -19.45921 -18.63146 -16.41209 -16.12231 -15.35500 -14.98641 -14.73400 -14.58830 -13.98521 -13.60317 -13.33594 -12.92735 -12.72558 -12.40316 -11.96846 -11.59333 -11.46683 -11.14292 -10.93770 -10.70063 -10.59273 -10.56186 -10.32183 -10.28110 -10.00276 -9.85252 -9.34246 -9.05954 -9.00088 -8.57001 -7.93091 -7.29150 -6.00070 -4.05435 3.28093 3.33967 3.37612 3.81424 4.36770 4.91519 5.04946 5.12362 5.19333 5.34121 5.40106 5.45380 5.62539 5.65411 5.69292 5.88573 5.96947 6.17658 6.25535 6.26267 6.34203 6.36911 6.43587 6.58889 6.72991 6.84269 6.91706 6.92540 7.14883 7.23186 7.36590 7.45179 7.58432 7.59924 7.94042 8.08179 8.20001 8.58602 8.90329 9.50892 10.95149 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.034311 B = 0.006639 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.873502 B = 4216.451875 C = 4396.274348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.094 3.906 4 H 0.065 0.935 5 C -0.137 4.137 6 C -0.117 4.117 7 C 0.061 3.939 8 N -0.532 5.532 9 C 0.076 3.924 10 C 0.056 3.944 11 C -0.486 4.486 12 H 0.059 0.941 13 C 0.069 3.931 14 N -0.876 5.876 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.276 1.276 19 C -0.199 4.199 20 C -0.207 4.207 21 C 0.062 3.938 22 H 0.039 0.961 23 H 0.080 0.920 24 H 0.037 0.963 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.098 0.902 30 H 0.033 0.967 31 H 0.103 0.897 32 H 0.037 0.963 33 H 0.261 0.739 34 H 0.087 0.913 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.033 0.967 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.391 -3.552 2.480 11.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C 0.036 3.964 4 H 0.083 0.917 5 C -0.175 4.175 6 C -0.155 4.155 7 C -0.067 4.067 8 N -0.258 5.258 9 C -0.050 4.050 10 C 0.055 3.945 11 C -0.524 4.524 12 H 0.077 0.923 13 C -0.133 4.133 14 N -0.514 5.514 15 Si 0.719 3.281 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.237 4.237 20 C -0.244 4.244 21 C -0.067 4.067 22 H 0.058 0.942 23 H 0.099 0.901 24 H 0.056 0.944 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.052 0.948 31 H 0.121 0.879 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.051 0.949 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.526 -3.579 2.392 11.373 hybrid contribution 1.201 -0.238 0.198 1.240 sum -9.325 -3.817 2.589 10.404 Atomic orbital electron populations 1.22712 0.81703 1.02113 0.99744 1.87862 1.19127 1.28744 1.95095 1.22150 0.95386 0.83345 0.95520 0.91705 1.22051 1.00362 0.98169 0.96924 1.21630 0.98085 0.95854 0.99968 1.22116 0.94090 1.02845 0.87599 1.61906 1.29543 1.21888 1.12472 1.21957 0.90124 0.97596 0.95349 1.18925 0.90478 0.88583 0.96536 1.20615 0.89347 1.23202 1.19222 0.92254 1.24960 0.98817 0.94834 0.94694 1.69777 1.33923 1.36627 1.11089 0.86666 0.84991 0.78183 0.78246 1.20315 1.21289 1.20151 1.23077 1.04349 1.01562 0.94681 1.22785 1.02768 1.05773 0.93061 1.21907 0.93348 0.91819 0.99583 0.94209 0.90116 0.94401 0.91688 0.92743 0.91789 0.91931 0.88392 0.94832 0.87922 0.94407 0.92836 0.89513 0.91823 0.91673 0.91425 0.94863 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.82 101.05 1.09 1.48 16 2 O -0.39 -5.97 10.35 -35.23 -0.36 -6.33 16 3 C 0.09 1.48 2.77 -26.65 -0.07 1.41 16 4 H 0.06 1.01 7.79 -51.93 -0.40 0.60 16 5 C -0.14 -2.05 5.62 -26.61 -0.15 -2.20 16 6 C -0.12 -1.88 6.09 -26.65 -0.16 -2.04 16 7 C 0.06 1.22 4.26 -3.83 -0.02 1.20 16 8 N -0.53 -10.81 3.66 -234.67 -0.86 -11.67 16 9 C 0.08 1.79 4.85 -3.83 -0.02 1.77 16 10 C 0.06 1.38 2.14 -155.66 -0.33 1.04 16 11 C -0.49 -13.12 9.03 -34.44 -0.31 -13.44 16 12 H 0.06 1.61 7.86 -52.49 -0.41 1.20 16 13 C 0.07 1.82 5.13 -17.82 -0.09 1.73 16 14 N -0.88 -23.34 10.75 55.43 0.60 -22.74 16 15 Si 0.89 20.61 29.57 -169.99 -5.03 15.58 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 C -0.20 -4.56 8.04 -26.73 -0.21 -4.78 16 20 C -0.21 -4.66 9.94 -26.73 -0.27 -4.93 16 21 C 0.06 1.14 5.09 -3.84 -0.02 1.12 16 22 H 0.04 0.41 8.09 -51.93 -0.42 -0.01 16 23 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.38 7.94 -51.93 -0.41 -0.03 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.71 7.94 -51.93 -0.41 0.30 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.10 2.19 5.53 -51.93 -0.29 1.90 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.10 2.68 4.92 -51.92 -0.26 2.42 16 32 H 0.04 0.87 7.82 -51.93 -0.41 0.47 16 33 H 0.26 6.73 8.32 -40.82 -0.34 6.40 16 34 H 0.09 1.89 5.49 -51.93 -0.28 1.61 16 35 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.07 1.25 7.94 -51.93 -0.41 0.84 16 LS Contribution 302.32 15.07 4.56 4.56 Total: -1.00 -26.77 302.32 -8.31 -35.08 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -6.65 Total: 3.17 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -0.56 Total: -17.64 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: -0.26 Total: -34.42 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.36 Total: -6.33 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.77 -8.31 -35.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230249698.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.057 kcal (2) G-P(sol) polarization free energy of solvation -26.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds