Wall clock time and date at job start Mon Mar 30 2020 17:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 113.99961 * 2 1 4 4 H 1.08991 * 109.50980 * 329.92531 * 3 2 1 5 5 C 1.53119 * 109.50267 * 90.00581 * 3 2 1 6 6 C 1.53120 * 109.16255 * 177.59445 * 5 3 2 7 7 C 1.53035 * 109.27582 * 302.34075 * 6 5 3 8 8 N 1.46852 * 109.52234 * 59.18194 * 7 6 5 9 9 C 1.46898 * 111.00190 * 174.15564 * 8 7 6 10 10 C 1.53000 * 109.47011 * 285.90211 * 9 8 7 11 11 C 1.50704 * 115.55074 * 148.21955 * 10 9 8 12 12 H 1.08000 * 120.00167 * 144.67693 * 11 10 9 13 13 C 1.37874 * 119.99711 * 324.67691 * 11 10 9 14 14 N 1.31510 * 120.00150 * 345.71267 * 13 11 10 15 15 Si 1.86807 * 119.99936 * 165.71367 * 13 11 10 16 16 H 1.48499 * 109.47093 * 59.99900 * 15 13 11 17 17 H 1.48499 * 109.46959 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.46962 * 299.99922 * 15 13 11 19 19 C 1.52997 * 117.50320 * 2.50551 * 10 9 8 20 20 C 1.53000 * 60.00226 * 252.51539 * 19 10 9 21 21 C 1.46842 * 111.19703 * 298.25650 * 8 7 6 22 22 H 1.08997 * 109.47218 * 59.99644 * 1 2 3 23 23 H 1.08994 * 109.47360 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46446 * 299.99660 * 1 2 3 25 25 H 1.09004 * 109.52306 * 57.68663 * 5 3 2 26 26 H 1.09001 * 109.52362 * 297.50363 * 5 3 2 27 27 H 1.09001 * 109.50208 * 62.28538 * 6 5 3 28 28 H 1.09000 * 109.50060 * 182.40207 * 6 5 3 29 29 H 1.09004 * 109.45876 * 179.19226 * 7 6 5 30 30 H 1.08993 * 109.46656 * 299.16570 * 7 6 5 31 31 H 1.09008 * 109.46918 * 45.89592 * 9 8 7 32 32 H 1.08990 * 109.47202 * 165.89747 * 9 8 7 33 33 H 0.97000 * 120.00146 * 185.01155 * 14 13 11 34 34 H 1.08998 * 117.49664 * 0.02562 * 19 10 9 35 35 H 1.08998 * 117.49806 * 145.02256 * 19 10 9 36 36 H 1.08996 * 117.49548 * 252.51230 * 20 19 10 37 37 H 1.08997 * 117.49933 * 107.48872 * 20 19 10 38 38 H 1.09004 * 109.46379 * 301.72338 * 21 8 7 39 39 H 1.08999 * 109.45687 * 181.75406 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3461 1.9996 -0.5148 5 6 2.2183 1.7724 1.4433 6 6 2.8960 3.1454 1.4347 7 6 4.2217 3.0496 0.6761 8 7 3.9689 2.5999 -0.6988 9 6 5.2016 2.6291 -1.4973 10 6 5.5548 4.0784 -1.8373 11 6 7.0270 4.3777 -1.9571 12 1 7.3748 5.0946 -2.6861 13 6 7.9298 3.7363 -1.1358 14 7 7.5064 3.0867 -0.0737 15 14 9.7547 3.7902 -1.5317 16 1 10.2177 5.2012 -1.5412 17 1 10.5072 3.0297 -0.5020 18 1 9.9897 3.1832 -2.8664 19 6 4.6540 5.1770 -1.2696 20 6 4.6018 4.8396 -2.7610 21 6 3.3616 1.2631 -0.7170 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3632 0.5138 0.8901 25 1 2.8504 1.0574 1.9700 26 1 1.2534 1.8455 1.9452 27 1 2.2462 3.8688 0.9422 28 1 3.0854 3.4642 2.4597 29 1 4.7000 4.0289 0.6557 30 1 4.8761 2.3363 1.1770 31 1 6.0151 2.1813 -0.9262 32 1 5.0514 2.0660 -2.4183 33 1 8.1454 2.6974 0.5435 34 1 3.8099 4.8673 -0.6534 35 1 5.1261 6.1165 -0.9824 36 1 5.0395 5.5572 -3.4549 37 1 3.7232 4.3079 -3.1263 38 1 4.0200 0.5581 -0.2096 39 1 3.2152 0.9449 -1.7492 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230249698.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:54:04 Heat of formation + Delta-G solvation = -28.152839 kcal Electronic energy + Delta-G solvation = -18257.756514 eV Core-core repulsion = 15586.740368 eV Total energy + Delta-G solvation = -2671.016146 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 239.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.53753 -38.81152 -36.95405 -34.19614 -33.42337 -31.06689 -28.09966 -27.33439 -27.01394 -23.93389 -23.57253 -22.57796 -20.95235 -20.43773 -18.16012 -17.49907 -16.76503 -16.55855 -16.27781 -16.04371 -15.56812 -15.03529 -14.98818 -14.38904 -14.16958 -13.85607 -13.47896 -13.26343 -12.99942 -12.83787 -12.64523 -12.49744 -12.11807 -11.97803 -11.84010 -11.82671 -11.53348 -11.52631 -11.04108 -10.93551 -10.46388 -10.37986 -9.83473 -9.04013 -7.99698 -6.13005 1.42137 1.45386 1.52074 2.42333 2.62079 3.02460 3.49634 3.76211 3.85455 3.91182 4.14781 4.27931 4.41302 4.52888 4.56924 4.58967 4.63522 4.71311 4.76531 4.82686 4.85648 4.90044 4.99578 5.03602 5.04729 5.09395 5.23442 5.28898 5.44032 5.46142 5.57061 5.59243 5.76201 6.03179 6.25922 6.27343 6.51182 6.60976 6.88034 7.44900 8.91734 Molecular weight = 239.16amu Principal moments of inertia in cm(-1) A = 0.034311 B = 0.006639 C = 0.006368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.873502 B = 4216.451875 C = 4396.274348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.410 6.410 3 C 0.103 3.897 4 H 0.074 0.926 5 C -0.131 4.131 6 C -0.108 4.108 7 C 0.068 3.932 8 N -0.525 5.525 9 C 0.085 3.915 10 C 0.027 3.973 11 C -0.514 4.514 12 H 0.049 0.951 13 C 0.030 3.970 14 N -0.890 5.890 15 Si 0.949 3.051 16 H -0.275 1.275 17 H -0.283 1.283 18 H -0.274 1.274 19 C -0.187 4.187 20 C -0.191 4.191 21 C 0.061 3.939 22 H 0.048 0.952 23 H 0.099 0.901 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.007 0.993 31 H 0.076 0.924 32 H 0.033 0.967 33 H 0.260 0.740 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.015 0.985 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 -3.652 2.795 12.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.329 6.329 3 C 0.045 3.955 4 H 0.092 0.908 5 C -0.169 4.169 6 C -0.146 4.146 7 C -0.060 4.060 8 N -0.251 5.251 9 C -0.042 4.042 10 C 0.026 3.974 11 C -0.552 4.552 12 H 0.067 0.933 13 C -0.170 4.170 14 N -0.527 5.527 15 Si 0.775 3.225 16 H -0.201 1.201 17 H -0.209 1.209 18 H -0.200 1.200 19 C -0.225 4.225 20 C -0.228 4.228 21 C -0.068 4.068 22 H 0.066 0.934 23 H 0.117 0.883 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.025 0.975 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.117 0.883 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.033 0.967 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.158 -3.678 2.709 12.988 hybrid contribution 1.672 -0.240 0.087 1.692 sum -10.486 -3.918 2.795 11.538 Atomic orbital electron populations 1.22974 0.79362 1.03783 1.00846 1.87834 1.21642 1.28173 1.95229 1.21959 0.93788 0.84097 0.95663 0.90791 1.22001 1.01461 0.96912 0.96531 1.21565 0.95786 0.96993 1.00289 1.21998 0.95968 1.00410 0.87574 1.61898 1.27686 1.23112 1.12376 1.21680 0.90709 0.96694 0.95157 1.19021 0.90077 0.89597 0.98713 1.20843 0.91087 1.23790 1.19439 0.93323 1.25572 1.02343 0.94586 0.94507 1.69915 1.34785 1.36657 1.11369 0.85759 0.80639 0.78111 0.77966 1.20062 1.20879 1.19964 1.22988 1.03978 1.00307 0.95261 1.22781 1.02323 1.04945 0.92775 1.21952 0.94697 0.90157 0.99948 0.93353 0.88304 0.92986 0.92749 0.89790 0.90809 0.90225 0.91077 0.97455 0.90692 0.94847 0.92997 0.88296 0.92878 0.91531 0.89989 0.96680 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.82 113.37 1.23 1.73 16 2 O -0.41 -11.61 10.35 -148.98 -1.54 -13.15 16 3 C 0.10 3.04 2.77 30.65 0.08 3.12 16 4 H 0.07 2.06 7.79 -2.39 -0.02 2.05 16 5 C -0.13 -3.60 5.62 30.67 0.17 -3.42 16 6 C -0.11 -3.24 6.09 30.65 0.19 -3.06 16 7 C 0.07 2.72 4.26 86.32 0.37 3.09 16 8 N -0.53 -21.27 3.66 -896.37 -3.28 -24.56 16 9 C 0.08 4.06 4.85 86.30 0.42 4.48 16 10 C 0.03 1.34 2.14 -52.93 -0.11 1.22 16 11 C -0.51 -28.24 9.03 25.60 0.23 -28.00 16 12 H 0.05 2.69 7.86 -2.91 -0.02 2.67 16 13 C 0.03 1.63 5.13 84.65 0.43 2.07 16 14 N -0.89 -48.46 10.75 21.45 0.23 -48.23 16 15 Si 0.95 42.77 29.57 68.60 2.03 44.79 16 16 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 17 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 C -0.19 -8.55 8.04 30.59 0.25 -8.31 16 20 C -0.19 -8.47 9.94 30.60 0.30 -8.17 16 21 C 0.06 2.22 5.09 86.33 0.44 2.66 16 22 H 0.05 0.85 8.09 -2.39 -0.02 0.83 16 23 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.05 0.85 7.94 -2.39 -0.02 0.84 16 25 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.08 1.85 7.94 -2.39 -0.02 1.84 16 27 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.07 3.21 5.53 -2.38 -0.01 3.20 16 30 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.08 4.05 4.92 -2.38 -0.01 4.04 16 32 H 0.03 1.57 7.82 -2.39 -0.02 1.55 16 33 H 0.26 13.68 8.32 -92.71 -0.77 12.91 16 34 H 0.10 4.23 5.49 -2.39 -0.01 4.21 16 35 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.07 2.90 8.14 -2.39 -0.02 2.89 16 37 H 0.08 3.38 8.14 -2.39 -0.02 3.36 16 38 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.07 2.47 7.94 -2.39 -0.02 2.45 16 Total: -1.00 -57.50 302.32 2.43 -55.07 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 1.00 Total: 18.68 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: 4.00 Total: -32.59 kcal Atomic # 7 Polarization: -69.74 SS G_CDS: -3.05 Total: -72.79 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -1.54 Total: -13.15 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -57.50 2.43 -55.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230249698.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.916 kcal (2) G-P(sol) polarization free energy of solvation -57.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds