Wall clock time and date at job start Mon Mar 30 2020 17:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47136 * 2 1 4 4 H 1.08997 * 109.47108 * 55.00205 * 3 2 1 5 5 C 1.52996 * 109.46955 * 294.99884 * 3 2 1 6 6 C 1.53001 * 109.47176 * 300.00192 * 5 3 2 7 7 C 1.52996 * 109.47365 * 299.99973 * 6 5 3 8 8 C 1.52996 * 109.46951 * 59.99890 * 7 6 5 9 9 H 1.09000 * 109.47145 * 60.00120 * 8 7 6 10 10 C 1.53006 * 109.47102 * 180.02562 * 8 7 6 11 11 N 1.46902 * 109.46626 * 294.99959 * 10 8 7 12 12 C 1.46905 * 110.99800 * 180.02562 * 11 10 8 13 13 H 1.09006 * 109.46732 * 34.99770 * 12 11 10 14 14 C 1.52997 * 109.47136 * 275.00438 * 12 11 10 15 15 C 1.50696 * 109.47142 * 154.99939 * 12 11 10 16 16 H 1.07997 * 120.00158 * 0.02562 * 15 12 11 17 17 C 1.37881 * 119.99905 * 180.02562 * 15 12 11 18 18 N 1.31509 * 119.99967 * 359.97438 * 17 15 12 19 19 Si 1.86793 * 119.99886 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47521 * 59.99827 * 19 17 15 21 21 H 1.48505 * 109.47112 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47322 * 299.99752 * 19 17 15 23 23 C 1.52997 * 109.47350 * 299.99902 * 8 7 6 24 24 H 1.08997 * 109.46815 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.46617 * 300.00197 * 1 2 3 26 26 H 1.08996 * 109.47060 * 60.00044 * 1 2 3 27 27 H 1.08997 * 109.46765 * 239.99873 * 2 1 3 28 28 H 1.09004 * 109.46877 * 120.00172 * 2 1 3 29 29 H 1.09000 * 109.47145 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47139 * 60.00187 * 5 3 2 31 31 H 1.09007 * 109.46967 * 180.02562 * 6 5 3 32 32 H 1.08993 * 109.47190 * 60.00310 * 6 5 3 33 33 H 1.09006 * 109.47002 * 300.00435 * 7 6 5 34 34 H 1.08997 * 109.47293 * 180.02562 * 7 6 5 35 35 H 1.08993 * 109.46955 * 55.00306 * 10 8 7 36 36 H 1.09000 * 109.47050 * 175.00134 * 10 8 7 37 37 H 1.00904 * 111.00423 * 303.95194 * 11 10 8 38 38 H 1.08997 * 109.47712 * 59.99410 * 14 12 11 39 39 H 1.09001 * 109.47216 * 179.97438 * 14 12 11 40 40 H 1.08998 * 109.46954 * 299.99610 * 14 12 11 41 41 H 0.97002 * 120.00123 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.47394 * 179.97438 * 23 8 7 43 43 H 1.08990 * 109.47621 * 300.00357 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 2.2454 1.3698 -2.4890 7 6 3.7702 1.3716 -2.3633 8 6 4.1749 0.6876 -1.0560 9 1 3.8115 -0.3401 -1.0559 10 6 5.6998 0.6899 -0.9300 11 7 6.2804 -0.1363 -1.9969 12 6 7.7465 -0.1580 -1.9070 13 1 8.0466 -0.1339 -0.8593 14 6 8.3199 1.0624 -2.6299 15 6 8.2707 -1.4156 -2.5509 16 1 7.5836 -2.1273 -2.9840 17 6 9.6276 -1.6575 -2.5871 18 7 10.4644 -0.7906 -2.0601 19 14 10.2774 -3.2160 -3.3859 20 1 9.8691 -3.2480 -4.8133 21 1 11.7595 -3.2380 -3.2949 22 1 9.7204 -4.4008 -2.6851 23 6 3.5650 1.4443 0.1257 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.9990 3.1540 -1.3076 30 1 0.5490 2.1252 -1.3969 31 1 1.9573 1.8574 -3.4204 32 1 1.8820 0.3422 -2.4890 33 1 4.1335 2.3993 -2.3633 34 1 4.2047 0.8329 -3.2053 35 1 6.0701 1.7112 -1.0189 36 1 5.9848 0.2833 0.0404 37 1 5.9033 -1.0720 -1.9755 38 1 7.9408 1.9720 -2.1642 39 1 9.4078 1.0466 -2.5628 40 1 8.0198 1.0383 -3.6774 41 1 11.4190 -0.9610 -2.0853 42 1 3.8529 0.9567 1.0571 43 1 3.9282 2.4718 0.1256 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252806003.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:54:38 Heat of formation + Delta-G solvation = -43.202714 kcal Electronic energy + Delta-G solvation = -17870.819029 eV Core-core repulsion = 15334.983366 eV Total energy + Delta-G solvation = -2535.835663 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.36860 -35.93636 -33.58990 -32.23358 -30.92392 -29.39961 -27.78365 -25.27603 -24.30005 -23.10297 -22.06716 -20.59599 -19.65935 -18.22766 -16.49888 -15.56318 -14.90565 -14.81032 -14.43510 -14.18492 -13.88496 -13.33508 -13.18835 -12.91578 -12.47564 -12.11923 -11.99426 -11.80256 -11.60324 -11.38337 -11.22337 -10.94836 -10.85249 -10.73064 -10.64571 -10.56561 -10.25981 -10.11377 -10.07791 -9.80587 -9.70108 -9.49064 -8.77553 -8.43621 -7.16551 -5.99345 -4.05664 3.32735 3.37056 3.39899 4.42461 4.72393 4.76853 4.88131 5.14400 5.23284 5.31499 5.34492 5.35548 5.45102 5.60806 5.67590 5.70258 5.80495 5.84679 5.86985 5.91533 5.98587 6.10940 6.16273 6.19109 6.25548 6.33708 6.41394 6.47749 6.50625 6.61109 6.82144 6.85017 6.94790 7.19192 7.29643 7.56844 7.81620 7.95287 8.32236 8.46105 8.74465 9.05970 9.60136 11.06980 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.039713 B = 0.004670 C = 0.004512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.881190 B = 5994.888156 C = 6204.049496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.084 4.084 4 H 0.062 0.938 5 C -0.114 4.114 6 C -0.122 4.122 7 C -0.103 4.103 8 C -0.082 4.082 9 H 0.066 0.934 10 C 0.065 3.935 11 N -0.686 5.686 12 C 0.211 3.789 13 H -0.002 1.002 14 C -0.123 4.123 15 C -0.517 4.517 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.896 3.104 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.109 4.109 24 H 0.049 0.951 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.015 0.985 37 H 0.328 0.672 38 H 0.003 0.997 39 H 0.079 0.921 40 H 0.030 0.970 41 H 0.261 0.739 42 H 0.057 0.943 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.813 4.271 3.451 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.103 4.103 4 H 0.081 0.919 5 C -0.151 4.151 6 C -0.159 4.159 7 C -0.141 4.141 8 C -0.101 4.101 9 H 0.084 0.916 10 C -0.065 4.065 11 N -0.317 5.317 12 C 0.103 3.897 13 H 0.016 0.984 14 C -0.181 4.181 15 C -0.556 4.556 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.147 4.147 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.079 0.921 36 H 0.033 0.967 37 H 0.144 0.856 38 H 0.022 0.978 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.603 4.815 3.012 17.547 hybrid contribution 0.626 -1.340 0.420 1.537 sum -15.976 3.476 3.432 16.706 Atomic orbital electron populations 1.21821 0.96434 1.01181 1.01528 1.21683 0.95284 0.96825 1.02386 1.21113 0.95773 0.95953 0.97451 0.91916 1.21583 0.99639 0.99086 0.94832 1.21615 0.96779 1.00311 0.97238 1.21441 0.93784 1.00601 0.98248 1.21170 0.95230 0.99243 0.94469 0.91554 1.21946 0.92786 0.98809 0.93001 1.60713 1.09083 1.16073 1.45817 1.19084 0.81325 0.94672 0.94590 0.98388 1.21693 1.02873 0.95096 0.98430 1.21242 0.91963 1.04559 1.37829 0.92338 1.24922 0.96926 0.96764 0.95419 1.69892 1.02683 1.35174 1.45224 0.86594 0.77587 0.83424 0.79969 1.20213 1.21327 1.20372 1.21601 0.94265 1.00590 0.98293 0.93160 0.93200 0.92598 0.91009 0.92355 0.92385 0.92471 0.92715 0.92018 0.92758 0.90525 0.92137 0.96718 0.85560 0.97824 0.90261 0.95057 0.92930 0.92420 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 37.16 0.36 -1.00 16 2 C -0.12 -1.29 4.69 -26.73 -0.13 -1.42 16 3 C -0.08 -0.90 2.66 -90.62 -0.24 -1.15 16 4 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 5 C -0.11 -1.20 5.21 -26.73 -0.14 -1.34 16 6 C -0.12 -1.42 5.65 -26.73 -0.15 -1.57 16 7 C -0.10 -1.46 5.09 -26.74 -0.14 -1.60 16 8 C -0.08 -1.19 2.06 -90.62 -0.19 -1.38 16 9 H 0.07 0.97 6.54 -51.93 -0.34 0.63 16 10 C 0.06 1.18 4.87 -3.82 -0.02 1.17 16 11 N -0.69 -14.77 5.76 -107.95 -0.62 -15.39 16 12 C 0.21 5.46 2.60 -68.87 -0.18 5.28 16 13 H 0.00 -0.04 7.80 -51.93 -0.40 -0.45 16 14 C -0.12 -3.13 9.19 37.16 0.34 -2.79 16 15 C -0.52 -14.40 8.59 -34.44 -0.30 -14.69 16 16 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 18 N -0.89 -25.84 11.32 55.43 0.63 -25.21 16 19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.11 -1.37 4.73 -26.73 -0.13 -1.49 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 27 H 0.07 0.81 4.83 -51.93 -0.25 0.56 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.71 6.32 -51.93 -0.33 0.39 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.24 7.75 -51.93 -0.40 0.83 16 35 H 0.06 1.15 7.44 -51.93 -0.39 0.77 16 36 H 0.01 0.28 8.05 -51.93 -0.42 -0.14 16 37 H 0.33 6.93 8.22 -39.29 -0.32 6.60 16 38 H 0.00 0.06 7.45 -51.93 -0.39 -0.32 16 39 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 319.22 15.07 4.81 4.81 Total: -1.00 -27.96 319.22 -9.20 -37.16 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.00 Total: 2.52 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -0.99 Total: -20.36 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.01 Total: -40.60 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.96 -9.20 -37.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252806003.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.041 kcal (2) G-P(sol) polarization free energy of solvation -27.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds