Wall clock time and date at job start Mon Mar 30 2020 17:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86800 * 120.00050 * 2 1 4 4 H 1.48505 * 109.46870 * 239.99931 * 3 2 1 5 5 H 1.48504 * 109.47300 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47562 * 119.99737 * 3 2 1 7 7 C 1.39944 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00273 * 195.09090 * 7 2 1 9 9 C 1.41399 * 119.99885 * 15.08728 * 7 2 1 10 10 C 1.40736 * 120.24246 * 25.57126 * 9 7 2 11 11 C 1.37601 * 119.74087 * 180.32334 * 10 9 7 12 12 C 1.38661 * 120.24705 * 359.65475 * 11 10 9 13 13 C 1.38607 * 120.50289 * 0.02562 * 12 11 10 14 14 C 1.37638 * 120.25091 * 0.02819 * 13 12 11 15 15 C 1.50696 * 120.13068 * 179.97438 * 14 13 12 16 16 Br 1.96605 * 109.46992 * 89.99557 * 15 14 13 17 17 H 0.96999 * 120.00097 * 0.02562 * 1 2 3 18 18 H 1.07993 * 120.13194 * 359.97438 * 10 9 7 19 19 H 1.08000 * 119.87245 * 179.68246 * 11 10 9 20 20 H 1.07998 * 119.74246 * 180.02562 * 12 11 10 21 21 H 1.08001 * 119.87519 * 179.97438 * 13 12 11 22 22 H 1.09000 * 109.47182 * 329.99978 * 15 14 13 23 23 H 1.08995 * 109.47539 * 209.99666 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0600 -1.2280 0.2441 9 6 1.3375 -2.4155 -0.3177 10 6 0.1863 -2.3930 -1.1269 11 6 -0.4619 -3.5697 -1.4246 12 6 0.0193 -4.7751 -0.9365 13 6 1.1560 -4.8098 -0.1441 14 6 1.8199 -3.6450 0.1674 15 6 3.0551 -3.6858 1.0296 16 35 4.6431 -3.8975 -0.1101 17 1 -0.4850 0.8400 -0.0004 18 1 -0.1902 -1.4554 -1.5081 19 1 -1.3485 -3.5544 -2.0412 20 1 -0.4956 -5.6938 -1.1755 21 1 1.5217 -5.7542 0.2311 22 1 2.9888 -4.5266 1.7200 23 1 3.1347 -2.7571 1.5947 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075618646.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:50 Heat of formation + Delta-G solvation = -9.870260 kcal Electronic energy + Delta-G solvation = -9994.064132 eV Core-core repulsion = 8044.904312 eV Total energy + Delta-G solvation = -1949.159821 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 239.984 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.50445 -35.53618 -33.72822 -31.40410 -30.46194 -27.50189 -26.14973 -22.83848 -21.40397 -19.06212 -17.26972 -16.31815 -15.71561 -15.53249 -14.39004 -14.29597 -13.75584 -13.49568 -13.20791 -12.92147 -12.71232 -12.33631 -12.11166 -11.46242 -11.36667 -11.05016 -10.52395 -10.46922 -9.26933 -9.16399 -8.61382 -6.32262 0.59356 1.06609 1.39848 1.49315 1.54647 1.58893 2.20998 2.77770 3.78614 4.21311 4.23121 4.53451 4.69635 4.73224 4.98228 5.18942 5.36078 5.49822 5.72741 6.00391 6.13340 6.20496 6.37936 6.70893 6.95123 7.05452 8.33352 Molecular weight = 239.98amu Principal moments of inertia in cm(-1) A = 0.023162 B = 0.013101 C = 0.008805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.591950 B = 2136.671405 C = 3179.210525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.037 3.963 3 Si 0.972 3.028 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.480 4.480 8 H 0.083 0.917 9 C 0.098 3.902 10 C -0.191 4.191 11 C -0.109 4.109 12 C -0.242 4.242 13 C -0.079 4.079 14 C -0.219 4.219 15 C 0.010 3.990 16 Br -0.201 7.201 17 H 0.287 0.713 18 H 0.102 0.898 19 H 0.107 0.893 20 H 0.117 0.883 21 H 0.119 0.881 22 H 0.108 0.892 23 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.375 -3.656 1.319 6.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.178 4.178 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.510 4.510 8 H 0.101 0.899 9 C 0.095 3.905 10 C -0.210 4.210 11 C -0.128 4.128 12 C -0.261 4.261 13 C -0.098 4.098 14 C -0.221 4.221 15 C -0.103 4.103 16 Br -0.121 7.121 17 H 0.098 0.902 18 H 0.120 0.880 19 H 0.125 0.875 20 H 0.135 0.865 21 H 0.136 0.864 22 H 0.126 0.874 23 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.726 -3.571 0.984 6.820 hybrid contribution -0.304 0.859 0.133 0.921 sum 5.422 -2.712 1.117 6.165 Atomic orbital electron populations 1.69862 1.08868 1.30487 1.35590 1.26694 0.95406 1.04318 0.91400 0.85387 0.78902 0.76256 0.80105 1.18841 1.19405 1.18164 1.19817 0.97458 0.91593 1.42083 0.89892 1.17742 0.91630 0.92526 0.88631 1.21385 0.99908 0.97065 1.02667 1.21011 0.98882 0.93286 0.99616 1.20740 1.00876 0.96995 1.07528 1.20723 0.95180 0.96548 0.97321 1.19616 1.00332 0.94061 1.08081 1.23199 0.86908 1.05584 0.94603 1.97235 1.43183 1.98342 1.73383 0.90204 0.87999 0.87467 0.86481 0.86355 0.87374 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.90 10.87 21.83 0.24 -41.66 14 2 C 0.04 1.82 5.19 85.26 0.44 2.26 14 3 Si 0.97 37.59 29.59 68.60 2.03 39.62 14 4 H -0.26 -10.18 7.11 99.48 0.71 -9.48 14 5 H -0.27 -9.93 7.11 99.48 0.71 -9.22 14 6 H -0.26 -9.60 7.11 99.48 0.71 -8.89 14 7 C -0.48 -24.50 8.15 23.46 0.19 -24.31 14 8 H 0.08 4.08 6.84 -2.91 -0.02 4.06 14 9 C 0.10 5.03 5.57 -21.29 -0.12 4.91 14 10 C -0.19 -9.88 8.69 22.73 0.20 -9.68 14 11 C -0.11 -5.00 10.02 22.22 0.22 -4.78 14 12 C -0.24 -10.21 10.05 22.46 0.23 -9.98 14 13 C -0.08 -3.28 9.68 22.22 0.22 -3.07 14 14 C -0.22 -9.85 5.25 -19.41 -0.10 -9.95 14 15 C 0.01 0.37 6.13 71.23 0.44 0.81 14 16 Br -0.20 -7.33 33.92 -20.37 -0.69 -8.02 14 17 H 0.29 13.35 8.30 -92.71 -0.77 12.58 14 18 H 0.10 5.55 6.14 -2.91 -0.02 5.53 14 19 H 0.11 4.35 8.06 -2.91 -0.02 4.33 14 20 H 0.12 4.19 8.06 -2.91 -0.02 4.17 14 21 H 0.12 4.18 8.06 -2.91 -0.02 4.16 14 22 H 0.11 3.48 8.09 -2.39 -0.02 3.46 14 23 H 0.09 3.71 6.75 -2.39 -0.02 3.70 14 Total: -1.00 -53.94 224.71 4.50 -49.45 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 1.21 Total: 14.40 kcal Atomic # 6 Polarization: -55.50 SS G_CDS: 1.71 Total: -53.79 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.24 Total: -41.66 kcal Atomic # 14 Polarization: 37.59 SS G_CDS: 2.03 Total: 39.62 kcal Atomic # 35 Polarization: -7.33 SS G_CDS: -0.69 Total: -8.02 kcal Total: -53.94 4.50 -49.45 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075618646.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.576 kcal (2) G-P(sol) polarization free energy of solvation -53.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds