Wall clock time and date at job start Mon Mar 30 2020 17:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47231 * 2 1 4 4 N 1.46895 * 109.47272 * 239.99705 * 2 1 3 5 5 C 1.46903 * 111.00380 * 91.03738 * 4 2 1 6 6 C 1.46901 * 111.00022 * 327.08431 * 4 2 1 7 7 C 1.53001 * 109.47198 * 197.35944 * 6 4 2 8 8 C 1.50703 * 115.54716 * 275.47806 * 7 6 4 9 9 H 1.08007 * 119.99524 * 144.09610 * 8 7 6 10 10 C 1.37877 * 120.00066 * 324.09294 * 8 7 6 11 11 N 1.31519 * 119.99754 * 171.31633 * 10 8 7 12 12 Si 1.86801 * 120.00191 * 351.31130 * 10 8 7 13 13 H 1.48504 * 109.46628 * 96.13997 * 12 10 8 14 14 H 1.48492 * 109.47032 * 216.13878 * 12 10 8 15 15 H 1.48499 * 109.47068 * 336.13917 * 12 10 8 16 16 C 1.52999 * 117.49904 * 129.77451 * 7 6 4 17 17 C 1.52994 * 117.50063 * 61.15228 * 7 6 4 18 18 C 1.53005 * 109.47309 * 119.99478 * 2 1 3 19 19 C 1.53001 * 109.46864 * 63.12600 * 18 2 1 20 20 C 1.52997 * 109.46961 * 183.12730 * 18 2 1 21 21 C 1.52999 * 109.46953 * 303.12780 * 18 2 1 22 22 H 1.09005 * 109.46919 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47419 * 60.00403 * 1 2 3 24 24 H 1.09004 * 109.47390 * 300.00123 * 1 2 3 25 25 H 1.09009 * 109.46683 * 54.38624 * 5 4 2 26 26 H 1.08997 * 109.47233 * 174.38315 * 5 4 2 27 27 H 1.08997 * 109.46994 * 294.39393 * 5 4 2 28 28 H 1.08997 * 109.47328 * 317.36110 * 6 4 2 29 29 H 1.09002 * 109.46979 * 77.35960 * 6 4 2 30 30 H 0.96998 * 119.99907 * 179.97438 * 11 10 8 31 31 H 1.09005 * 117.50007 * 359.97438 * 16 7 6 32 32 H 1.08994 * 117.50021 * 145.01762 * 16 7 6 33 33 H 1.09000 * 117.50145 * 214.98315 * 17 7 6 34 34 H 1.09003 * 117.49846 * 359.97332 * 17 7 6 35 35 H 1.08999 * 109.47285 * 66.64053 * 19 18 2 36 36 H 1.08998 * 109.47151 * 186.63714 * 19 18 2 37 37 H 1.09006 * 109.47221 * 306.63622 * 19 18 2 38 38 H 1.08993 * 109.47362 * 64.89800 * 20 18 2 39 39 H 1.09003 * 109.46571 * 184.90320 * 20 18 2 40 40 H 1.08995 * 109.46914 * 304.89350 * 20 18 2 41 41 H 1.08996 * 109.47326 * 59.99875 * 21 18 2 42 42 H 1.09000 * 109.47101 * 179.97438 * 21 18 2 43 43 H 1.09003 * 109.47409 * 299.99554 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1993 5 6 2.2186 0.2508 -2.3077 6 6 1.1097 -1.7780 -1.5889 7 6 1.8333 -2.7335 -2.5399 8 6 1.8260 -2.3336 -3.9928 9 1 2.6887 -2.5318 -4.6118 10 6 0.7182 -1.7147 -4.5320 11 7 0.7712 -1.2129 -5.7465 12 14 -0.8581 -1.5892 -3.5376 13 1 -0.9154 -0.2661 -2.8657 14 1 -2.0268 -1.7362 -4.4418 15 1 -0.8851 -2.6654 -2.5147 16 6 1.7767 -4.2281 -2.2178 17 6 3.0773 -3.4496 -2.0104 18 6 2.0401 -0.7212 1.2493 19 6 1.5953 -2.1846 1.2107 20 6 3.5680 -0.6533 1.2892 21 6 1.4668 -0.0466 2.4973 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5137 -0.8899 24 1 -0.3634 0.5139 0.8900 25 1 2.8728 1.0601 -1.9831 26 1 2.6746 -0.2693 -3.1501 27 1 1.2561 0.6618 -2.6122 28 1 0.7916 -2.3222 -0.6997 29 1 0.2372 -1.3585 -2.0897 30 1 -0.0083 -0.7779 -6.1260 31 1 1.2243 -4.5307 -1.3281 32 1 1.7341 -4.9225 -3.0568 33 1 3.8905 -3.6318 -2.7131 34 1 3.3806 -3.2397 -0.9847 35 1 2.0971 -2.6953 0.3889 36 1 1.8556 -2.6684 2.1521 37 1 0.5163 -2.2327 1.0637 38 1 3.8828 0.3838 1.4043 39 1 3.9358 -1.2403 2.1308 40 1 3.9738 -1.0554 0.3610 41 1 0.3783 -0.0949 2.4688 42 1 1.8298 -0.5607 3.3873 43 1 1.7837 0.9959 2.5248 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259426.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:49:58 Heat of formation + Delta-G solvation = 27.241284 kcal Electronic energy + Delta-G solvation = -19476.153475 eV Core-core repulsion = 16943.372493 eV Total energy + Delta-G solvation = -2532.780982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.90946 -38.17669 -35.54693 -34.31899 -30.78873 -29.43896 -28.44858 -27.76455 -27.03493 -25.56361 -23.05271 -22.42604 -20.81403 -19.29502 -18.19794 -17.75098 -16.50377 -16.19204 -15.89017 -15.30482 -14.99686 -14.77476 -14.63660 -14.34189 -13.79432 -13.57382 -13.39736 -13.16010 -12.88905 -12.86092 -12.63504 -12.47085 -12.39678 -12.21669 -12.10694 -11.87220 -11.72563 -11.53073 -11.33696 -11.22736 -11.11226 -10.73110 -10.50979 -10.24290 -8.94437 -8.31373 -6.24284 1.19692 1.30953 1.39561 2.27429 2.86940 3.10154 3.67952 3.82564 3.98106 4.07443 4.18848 4.30197 4.37476 4.41062 4.53967 4.56590 4.61158 4.70472 4.74440 4.83839 4.87369 4.90980 4.96467 5.00044 5.06091 5.06667 5.08655 5.14609 5.20166 5.30198 5.33132 5.38024 5.41535 5.51116 5.59826 5.65408 5.73054 5.79240 6.24961 6.36476 6.46386 6.74832 7.33124 8.84030 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.010450 C = 0.009341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.715818 B = 2678.817511 C = 2996.904192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.081 3.919 3 H 0.078 0.922 4 N -0.513 5.513 5 C 0.036 3.964 6 C 0.083 3.917 7 C -0.014 4.014 8 C -0.469 4.469 9 H 0.031 0.969 10 C 0.028 3.972 11 N -0.941 5.941 12 Si 0.951 3.049 13 H -0.278 1.278 14 H -0.316 1.316 15 H -0.249 1.249 16 C -0.203 4.203 17 C -0.152 4.152 18 C -0.050 4.050 19 C -0.152 4.152 20 C -0.129 4.129 21 C -0.138 4.138 22 H 0.056 0.944 23 H 0.028 0.972 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.065 0.935 27 H -0.005 1.005 28 H 0.095 0.905 29 H 0.004 0.996 30 H 0.263 0.737 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 1.964 17.737 17.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.027 4.027 3 H 0.096 0.904 4 N -0.235 5.235 5 C -0.113 4.113 6 C -0.044 4.044 7 C -0.015 4.015 8 C -0.506 4.506 9 H 0.050 0.950 10 C -0.170 4.170 11 N -0.581 5.581 12 Si 0.783 3.217 13 H -0.206 1.206 14 H -0.246 1.246 15 H -0.173 1.173 16 C -0.241 4.241 17 C -0.189 4.189 18 C -0.051 4.051 19 C -0.209 4.209 20 C -0.186 4.186 21 C -0.196 4.196 22 H 0.075 0.925 23 H 0.047 0.953 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.083 0.917 27 H 0.013 0.987 28 H 0.113 0.887 29 H 0.022 0.978 30 H 0.072 0.928 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.085 0.915 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.813 1.852 17.705 17.820 hybrid contribution -1.592 0.539 -0.963 1.938 sum -0.780 2.391 16.741 16.929 Atomic orbital electron populations 1.22661 0.98014 1.02082 1.01821 1.21942 0.92394 0.97545 0.90845 0.90403 1.62021 1.46625 1.10564 1.04292 1.22348 0.98360 0.95517 0.95030 1.22384 0.91933 0.92811 0.97256 1.19262 0.99484 0.89909 0.92884 1.20526 1.00283 1.36500 0.93302 0.95046 1.25611 1.01260 0.94462 0.95620 1.70040 1.30952 1.39282 1.17861 0.85887 0.78985 0.79171 0.77674 1.20553 1.24638 1.17307 1.23165 1.02449 0.96731 1.01771 1.22584 0.90647 1.04812 1.00855 1.20439 0.96327 0.95097 0.93203 1.22190 1.00346 0.96214 1.02101 1.21704 0.93981 1.01242 1.01668 1.21916 1.00842 1.00509 0.96324 0.92520 0.95285 0.89482 0.90916 0.91658 0.98666 0.88717 0.97835 0.92801 0.89049 0.91043 0.91698 0.88091 0.92253 0.91688 0.93368 0.92985 0.92355 0.92916 0.92421 0.91535 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.53 7.45 71.98 0.54 -4.99 16 2 C 0.08 2.37 1.85 44.92 0.08 2.45 16 3 H 0.08 2.18 7.62 -2.39 -0.02 2.16 16 4 N -0.51 -18.74 3.53 -897.03 -3.17 -21.91 16 5 C 0.04 1.47 8.79 127.69 1.12 2.59 16 6 C 0.08 3.35 1.40 86.30 0.12 3.47 16 7 C -0.01 -0.65 1.25 -52.93 -0.07 -0.71 16 8 C -0.47 -26.39 7.56 25.60 0.19 -26.20 16 9 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 10 C 0.03 1.61 5.14 84.65 0.43 2.05 16 11 N -0.94 -58.48 13.96 21.45 0.30 -58.18 16 12 Si 0.95 46.72 23.93 68.60 1.64 48.36 16 13 H -0.28 -13.16 6.12 99.48 0.61 -12.55 16 14 H -0.32 -15.89 7.11 99.48 0.71 -15.18 16 15 H -0.25 -11.31 6.34 99.48 0.63 -10.68 16 16 C -0.20 -8.22 9.88 30.59 0.30 -7.92 16 17 C -0.15 -6.05 9.64 30.59 0.29 -5.75 16 18 C -0.05 -1.19 0.62 -52.18 -0.03 -1.22 16 19 C -0.15 -3.78 6.73 71.98 0.48 -3.29 16 20 C -0.13 -2.99 8.41 71.98 0.61 -2.38 16 21 C -0.14 -2.56 8.04 71.98 0.58 -1.98 16 22 H 0.06 1.73 4.82 -2.38 -0.01 1.72 16 23 H 0.03 0.98 7.18 -2.39 -0.02 0.97 16 24 H 0.09 2.02 6.37 -2.38 -0.02 2.01 16 25 H 0.07 2.52 7.91 -2.38 -0.02 2.50 16 26 H 0.06 3.18 6.01 -2.39 -0.01 3.17 16 27 H -0.01 -0.24 7.49 -2.39 -0.02 -0.25 16 28 H 0.10 3.45 3.30 -2.39 -0.01 3.44 16 29 H 0.00 0.20 0.94 -2.39 0.00 0.20 16 30 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 31 H 0.09 3.21 8.06 -2.38 -0.02 3.19 16 32 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 34 H 0.10 3.55 6.61 -2.39 -0.02 3.54 16 35 H 0.06 1.72 4.58 -2.39 -0.01 1.71 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 1.22 5.57 -2.38 -0.01 1.21 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 1.47 7.56 -2.39 -0.02 1.45 16 41 H 0.06 1.04 6.37 -2.39 -0.02 1.02 16 42 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -62.22 301.48 4.23 -57.99 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: 0.80 Total: 17.63 kcal Atomic # 6 Polarization: -48.55 SS G_CDS: 4.66 Total: -43.89 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -2.87 Total: -80.08 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.64 Total: 48.36 kcal Total: -62.22 4.23 -57.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259426.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.228 kcal (2) G-P(sol) polarization free energy of solvation -62.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds