Wall clock time and date at job start Mon Mar 30 2020 17:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46558 * 2 1 4 4 N 1.46901 * 109.47280 * 119.99898 * 2 1 3 5 5 C 1.46906 * 110.99535 * 88.11878 * 4 2 1 6 6 C 1.53002 * 109.46592 * 287.74690 * 5 4 2 7 7 C 1.50702 * 109.46589 * 186.51755 * 6 5 4 8 8 H 1.08001 * 120.00431 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99967 * 179.97438 * 7 6 5 10 10 N 1.31517 * 120.00352 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99970 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47160 * 89.99698 * 11 9 7 13 13 H 1.48495 * 109.47117 * 209.99920 * 11 9 7 14 14 H 1.48502 * 109.47038 * 329.99898 * 11 9 7 15 15 C 1.46900 * 110.99755 * 212.06650 * 4 2 1 16 16 C 1.52995 * 109.47580 * 287.92629 * 15 4 2 17 17 C 1.52991 * 109.47417 * 180.02562 * 16 15 4 18 18 C 1.53000 * 109.47376 * 59.99991 * 17 16 15 19 19 C 1.53001 * 109.47122 * 300.00173 * 18 17 16 20 20 C 1.53001 * 109.46753 * 167.92508 * 15 4 2 21 21 H 1.09006 * 109.47331 * 306.67099 * 1 2 3 22 22 H 1.08996 * 109.47737 * 66.67685 * 1 2 3 23 23 H 1.09010 * 109.46929 * 186.67628 * 1 2 3 24 24 H 1.08996 * 109.47270 * 240.00747 * 2 1 3 25 25 H 1.09006 * 109.47055 * 186.21917 * 3 2 1 26 26 H 1.09002 * 109.47569 * 306.21976 * 3 2 1 27 27 H 1.08997 * 109.47441 * 66.22307 * 3 2 1 28 28 H 1.08993 * 109.47462 * 47.74909 * 5 4 2 29 29 H 1.09002 * 109.46625 * 167.75166 * 5 4 2 30 30 H 1.09003 * 109.47404 * 306.51442 * 6 5 4 31 31 H 1.08992 * 109.47487 * 66.52062 * 6 5 4 32 32 H 0.96990 * 120.00310 * 180.02562 * 10 9 7 33 33 H 1.08996 * 109.46803 * 47.93139 * 15 4 2 34 34 H 1.08996 * 109.47015 * 300.00381 * 16 15 4 35 35 H 1.09001 * 109.46904 * 59.99856 * 16 15 4 36 36 H 1.09006 * 109.47061 * 299.99953 * 17 16 15 37 37 H 1.09002 * 109.47390 * 180.02562 * 17 16 15 38 38 H 1.09002 * 109.47317 * 180.02562 * 18 17 16 39 39 H 1.08996 * 109.46944 * 59.99950 * 18 17 16 40 40 H 1.09006 * 109.47435 * 300.00112 * 19 18 17 41 41 H 1.08993 * 109.47480 * 179.97438 * 19 18 17 42 42 H 1.09002 * 109.47479 * 300.00520 * 20 15 4 43 43 H 1.09006 * 109.47063 * 60.00174 * 20 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.1527 -2.1352 0.9568 6 6 0.7625 -2.7695 0.8792 7 6 0.8983 -4.2678 0.7908 8 1 1.8781 -4.7222 0.7905 9 6 -0.2283 -5.0587 0.7114 10 7 -0.1099 -6.3662 0.6338 11 14 -1.9230 -4.2729 0.7126 12 1 -2.3335 -3.9792 -0.6839 13 1 -2.9003 -5.2048 1.3303 14 1 -1.8824 -3.0098 1.4926 15 6 3.2909 -0.1163 1.6577 16 6 4.4082 -0.5110 0.6899 17 6 5.7322 0.0885 1.1676 18 6 6.0574 -0.4418 2.5655 19 6 4.9401 -0.0471 3.5334 20 6 3.6163 -0.6462 3.0557 21 1 -0.3634 0.6138 0.8243 22 1 -0.3634 0.4068 -0.9436 23 1 -0.3633 -1.0208 0.1195 24 1 1.8933 -0.5137 -0.8900 25 1 3.1242 1.4447 -0.1113 26 1 1.5885 1.9876 -0.8291 27 1 1.7703 1.9232 0.9404 28 1 2.6797 -2.2986 0.0168 29 1 2.7148 -2.5904 1.7723 30 1 0.1936 -2.5083 1.7715 31 1 0.2430 -2.3991 -0.0044 32 1 -0.9024 -6.9225 0.5775 33 1 3.2063 0.9698 1.6915 34 1 4.4928 -1.5972 0.6562 35 1 4.1763 -0.1336 -0.3060 36 1 5.6479 1.1748 1.2017 37 1 6.5281 -0.1923 0.4779 38 1 7.0005 -0.0143 2.9060 39 1 6.1417 -1.5280 2.5314 40 1 4.8557 1.0392 3.5674 41 1 5.1715 -0.4252 4.5291 42 1 2.8203 -0.3650 3.7453 43 1 3.7009 -1.7324 3.0220 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000102768731.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:51:00 Heat of formation + Delta-G solvation = -33.893581 kcal Electronic energy + Delta-G solvation = -18555.785310 eV Core-core repulsion = 16020.353321 eV Total energy + Delta-G solvation = -2535.431989 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.89853 -37.56957 -35.28674 -33.37912 -32.31912 -31.61909 -29.26338 -27.86034 -25.98957 -23.63353 -22.95762 -22.54118 -20.98642 -19.73869 -18.91798 -16.92036 -16.61045 -16.37150 -16.11713 -15.32180 -15.22281 -14.87005 -14.68971 -14.26160 -14.02361 -13.74783 -13.42225 -13.17597 -13.06679 -12.93973 -12.79545 -12.53073 -12.25896 -12.12572 -12.00520 -11.91707 -11.80809 -11.57294 -11.45162 -11.30965 -11.12239 -10.91719 -10.86821 -10.66495 -9.04102 -8.30607 -6.33819 1.33408 1.36095 1.49473 2.35419 3.02787 3.05122 3.79418 3.89271 4.00557 4.15987 4.18318 4.27798 4.37326 4.45190 4.50469 4.54738 4.61864 4.65415 4.71248 4.72682 4.84494 4.85440 4.91808 5.01633 5.04525 5.09845 5.15395 5.19539 5.26234 5.29810 5.33220 5.35829 5.39281 5.42713 5.49272 5.60716 5.65357 5.69545 6.22828 6.36304 6.45717 6.74056 7.30529 8.86431 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.026071 B = 0.007053 C = 0.006090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.735864 B = 3968.905546 C = 4596.275546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.074 3.926 3 C -0.147 4.147 4 N -0.538 5.538 5 C 0.087 3.913 6 C -0.001 4.001 7 C -0.532 4.532 8 H 0.028 0.972 9 C 0.007 3.993 10 N -0.952 5.952 11 Si 0.947 3.053 12 H -0.265 1.265 13 H -0.283 1.283 14 H -0.247 1.247 15 C 0.080 3.920 16 C -0.150 4.150 17 C -0.108 4.108 18 C -0.120 4.120 19 C -0.109 4.109 20 C -0.113 4.113 21 H 0.061 0.939 22 H 0.066 0.934 23 H 0.048 0.952 24 H 0.029 0.971 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.014 0.986 29 H 0.054 0.946 30 H 0.018 0.982 31 H 0.027 0.973 32 H 0.266 0.734 33 H 0.106 0.894 34 H 0.039 0.961 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.295 19.325 1.659 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.034 4.034 3 C -0.204 4.204 4 N -0.262 5.262 5 C -0.040 4.040 6 C -0.038 4.038 7 C -0.571 4.571 8 H 0.046 0.954 9 C -0.189 4.189 10 N -0.593 5.593 11 Si 0.770 3.230 12 H -0.190 1.190 13 H -0.209 1.209 14 H -0.171 1.171 15 C -0.027 4.027 16 C -0.189 4.189 17 C -0.146 4.146 18 C -0.158 4.158 19 C -0.147 4.147 20 C -0.151 4.151 21 H 0.080 0.920 22 H 0.085 0.915 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.033 0.967 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.063 0.937 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 7.841 19.247 2.019 20.881 hybrid contribution -0.210 -1.056 -0.773 1.326 sum 7.632 18.191 1.246 19.766 Atomic orbital electron populations 1.22155 0.95057 1.02354 1.01750 1.21662 0.95911 0.95296 0.90523 1.22108 1.01423 0.93999 1.02865 1.62309 1.28440 1.02548 1.32881 1.21824 0.97168 0.87230 0.97818 1.19642 0.94933 0.92689 0.96580 1.21485 0.93195 0.92314 1.50065 0.95375 1.25953 1.03838 0.95078 0.94070 1.70065 1.31078 1.05555 1.52554 0.85700 0.78488 0.79307 0.79473 1.18967 1.20860 1.17059 1.21983 0.86358 1.00369 0.94024 1.22256 0.97064 1.00192 0.99417 1.21441 0.95700 1.00880 0.96578 1.21555 0.98816 1.00263 0.95142 1.21470 0.93318 1.01278 0.98668 1.21592 0.97988 0.99488 0.96079 0.92009 0.91474 0.93283 0.95273 0.91520 0.91042 0.91349 0.96735 0.92758 0.96382 0.95512 0.92497 0.87639 0.94211 0.92143 0.90449 0.91852 0.90301 0.93691 0.90473 0.91499 0.92015 0.94327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.77 9.21 71.98 0.66 -4.10 16 2 C 0.07 2.22 2.16 44.92 0.10 2.31 16 3 C -0.15 -3.15 7.72 71.98 0.56 -2.60 16 4 N -0.54 -18.13 4.31 -845.90 -3.65 -21.78 16 5 C 0.09 3.69 3.51 86.30 0.30 3.99 16 6 C 0.00 -0.05 3.01 29.85 0.09 0.04 16 7 C -0.53 -32.00 9.66 25.60 0.25 -31.75 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 9 C 0.01 0.44 5.47 84.65 0.46 0.90 16 10 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 11 Si 0.95 45.85 27.47 68.60 1.88 47.73 16 12 H -0.26 -12.20 7.11 99.48 0.71 -11.50 16 13 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 14 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 15 C 0.08 2.17 1.68 44.91 0.08 2.24 16 16 C -0.15 -3.89 4.08 30.59 0.12 -3.77 16 17 C -0.11 -2.12 5.92 30.59 0.18 -1.94 16 18 C -0.12 -2.36 5.92 30.59 0.18 -2.18 16 19 C -0.11 -2.21 5.92 30.58 0.18 -2.02 16 20 C -0.11 -3.08 5.20 30.58 0.16 -2.92 16 21 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 22 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.05 1.82 4.43 -2.38 -0.01 1.81 16 24 H 0.03 0.96 7.54 -2.39 -0.02 0.94 16 25 H 0.07 1.31 5.39 -2.38 -0.01 1.30 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 1.40 7.47 -2.39 -0.02 1.38 16 28 H 0.01 0.63 6.83 -2.39 -0.02 0.62 16 29 H 0.05 2.41 6.05 -2.39 -0.01 2.40 16 30 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 31 H 0.03 1.30 4.97 -2.39 -0.01 1.28 16 32 H 0.27 15.95 8.31 -92.72 -0.77 15.18 16 33 H 0.11 2.42 5.39 -2.39 -0.01 2.41 16 34 H 0.04 1.25 6.68 -2.39 -0.02 1.24 16 35 H 0.06 1.54 6.39 -2.39 -0.02 1.52 16 36 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.04 1.25 6.36 -2.38 -0.02 1.24 16 Total: -1.00 -66.74 308.40 2.76 -63.98 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.90 Total: 12.86 kcal Atomic # 6 Polarization: -45.12 SS G_CDS: 3.32 Total: -41.79 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -3.35 Total: -82.77 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.88 Total: 47.73 kcal Total: -66.74 2.76 -63.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102768731.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.086 kcal (2) G-P(sol) polarization free energy of solvation -66.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds