Wall clock time and date at job start Mon Mar 30 2020 17:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47337 * 2 1 4 4 H 1.09004 * 109.46983 * 305.43918 * 3 2 1 5 5 C 1.50699 * 109.47524 * 185.44240 * 3 2 1 6 6 H 1.08000 * 119.99988 * 240.00027 * 5 3 2 7 7 C 1.37884 * 119.99684 * 59.99404 * 5 3 2 8 8 N 1.31514 * 120.00166 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99812 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.46915 * 179.97438 * 9 7 5 11 11 H 1.48492 * 109.47437 * 300.00531 * 9 7 5 12 12 H 1.48507 * 109.46730 * 60.00469 * 9 7 5 13 13 N 1.46900 * 109.47351 * 65.43955 * 3 2 1 14 14 C 1.46897 * 111.00258 * 205.21081 * 13 3 2 15 15 H 1.09004 * 110.67513 * 325.14044 * 14 13 3 16 16 C 1.54888 * 110.75499 * 88.37499 * 14 13 3 17 17 C 1.54270 * 104.19803 * 156.25801 * 16 14 13 18 18 C 1.53002 * 110.03349 * 95.67177 * 17 16 14 19 19 C 1.52997 * 110.03302 * 217.10683 * 17 16 14 20 20 C 1.53873 * 106.59503 * 336.39274 * 17 16 14 21 21 C 1.54266 * 106.60149 * 359.97438 * 20 17 16 22 22 H 1.09001 * 110.48889 * 142.29308 * 21 20 17 23 23 C 1.53003 * 110.48553 * 264.93011 * 21 20 17 24 24 H 1.08992 * 109.47165 * 179.57864 * 1 2 3 25 25 H 1.09001 * 109.47418 * 299.58393 * 1 2 3 26 26 H 1.09007 * 109.46778 * 59.57561 * 1 2 3 27 27 H 1.08994 * 109.47797 * 239.99797 * 2 1 3 28 28 H 1.09004 * 109.46706 * 119.99321 * 2 1 3 29 29 H 0.96992 * 120.00213 * 179.97438 * 8 7 5 30 30 H 1.00894 * 111.00270 * 329.16525 * 13 3 2 31 31 H 1.09004 * 110.48730 * 274.93346 * 16 14 13 32 32 H 1.08999 * 110.48891 * 37.57883 * 16 14 13 33 33 H 1.09001 * 109.46803 * 60.00127 * 18 17 16 34 34 H 1.08997 * 109.47135 * 179.97438 * 18 17 16 35 35 H 1.08996 * 109.47275 * 300.00570 * 18 17 16 36 36 H 1.08994 * 109.47409 * 60.00165 * 19 17 16 37 37 H 1.09007 * 109.46955 * 180.02562 * 19 17 16 38 38 H 1.08997 * 109.47039 * 299.99433 * 19 17 16 39 39 H 1.09006 * 110.03494 * 119.28460 * 20 17 16 40 40 H 1.09003 * 110.03368 * 240.70893 * 20 17 16 41 41 H 1.08997 * 109.46960 * 174.77119 * 23 21 20 42 42 H 1.09000 * 109.47316 * 294.77526 * 23 21 20 43 43 H 1.09009 * 109.46908 * 54.77571 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5993 1.9837 -0.8373 5 6 3.5410 1.4447 -0.1348 6 1 4.1519 1.8872 0.6381 7 6 4.1343 0.8815 -1.2447 8 7 3.3903 0.3429 -2.1860 9 14 5.9948 0.8835 -1.4114 10 1 6.3784 0.2223 -2.6846 11 1 6.4904 2.2833 -1.4111 12 1 6.5948 0.1457 -0.2708 13 7 1.6605 2.0961 1.2597 14 6 1.5757 3.5530 1.0921 15 1 2.3292 3.9038 0.3869 16 6 0.1569 3.9709 0.6325 17 6 0.0312 5.4413 1.0822 18 6 0.3906 6.3758 -0.0748 19 6 -1.3943 5.7230 1.5609 20 6 1.0242 5.6325 2.2420 21 6 1.7181 4.2716 2.4571 22 1 2.7700 4.4145 2.7046 23 6 1.0109 3.4779 3.5574 24 1 -0.3633 -1.0276 -0.0076 25 1 -0.3634 0.5074 0.8937 26 1 -0.3633 0.5205 -0.8862 27 1 1.8934 -0.5138 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 3.8076 -0.0530 -2.9670 30 1 0.7933 1.7218 1.6143 31 1 0.0690 3.8947 -0.4513 32 1 -0.5990 3.3566 1.1216 33 1 -0.2870 6.1973 -0.9097 34 1 0.2984 7.4113 0.2526 35 1 1.4158 6.1843 -0.3915 36 1 -1.6313 5.0700 2.4008 37 1 -1.4729 6.7636 1.8758 38 1 -2.0945 5.5364 0.7467 39 1 1.7621 6.3911 1.9806 40 1 0.4905 5.9261 3.1459 41 1 1.4548 2.4853 3.6320 42 1 1.1217 3.9979 4.5090 43 1 -0.0479 3.3851 3.3152 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248843273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:47:56 Heat of formation + Delta-G solvation = -48.425944 kcal Electronic energy + Delta-G solvation = -18591.667266 eV Core-core repulsion = 16055.605107 eV Total energy + Delta-G solvation = -2536.062159 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.60255 -37.54892 -34.65107 -33.63647 -32.02415 -29.31214 -28.29673 -27.87191 -27.19772 -24.90673 -23.88100 -21.44950 -20.17287 -19.55711 -18.24402 -17.04099 -16.60905 -16.06170 -15.63226 -14.93930 -14.86738 -14.45684 -14.29809 -14.03886 -13.83864 -13.62757 -13.38699 -13.15497 -12.98633 -12.75146 -12.70717 -12.55730 -12.38004 -12.21409 -11.98407 -11.91285 -11.54700 -11.49262 -11.40901 -11.26263 -11.09152 -10.98845 -10.90246 -10.41621 -8.81932 -8.05225 -6.17324 1.39946 1.41348 1.49117 2.43662 3.18902 3.60491 3.68841 3.82263 4.07262 4.41184 4.42044 4.48865 4.53246 4.57257 4.59160 4.63471 4.65671 4.72438 4.84209 4.87242 4.93770 4.95837 5.04911 5.14342 5.14993 5.18910 5.22197 5.27437 5.35853 5.37204 5.39928 5.43724 5.58766 5.59666 5.66252 5.71552 5.79413 5.93588 6.40398 6.60963 6.98184 7.10480 7.51960 8.97141 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.024111 B = 0.007284 C = 0.006746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.036810 B = 3843.362713 C = 4149.794592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.122 4.122 3 C 0.229 3.771 4 H -0.035 1.035 5 C -0.511 4.511 6 H 0.046 0.954 7 C 0.009 3.991 8 N -0.920 5.920 9 Si 0.953 3.047 10 H -0.283 1.283 11 H -0.276 1.276 12 H -0.273 1.273 13 N -0.675 5.675 14 C 0.095 3.905 15 H 0.043 0.957 16 C -0.134 4.134 17 C -0.064 4.064 18 C -0.137 4.137 19 C -0.131 4.131 20 C -0.104 4.104 21 C -0.084 4.084 22 H 0.054 0.946 23 C -0.128 4.128 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.034 0.966 27 H 0.066 0.934 28 H 0.035 0.965 29 H 0.259 0.741 30 H 0.328 0.672 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.071 0.929 35 H 0.037 0.963 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.062 0.938 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.700 9.357 8.138 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.161 4.161 3 C 0.121 3.879 4 H -0.017 1.017 5 C -0.550 4.550 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.560 5.560 9 Si 0.779 3.221 10 H -0.208 1.208 11 H -0.202 1.202 12 H -0.198 1.198 13 N -0.306 5.306 14 C -0.016 4.016 15 H 0.062 0.938 16 C -0.173 4.173 17 C -0.065 4.065 18 C -0.194 4.194 19 C -0.188 4.188 20 C -0.142 4.142 21 C -0.103 4.103 22 H 0.073 0.927 23 C -0.185 4.185 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.147 0.853 31 H 0.055 0.945 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.056 0.944 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.031 9.260 8.205 14.750 hybrid contribution 0.476 -0.255 -1.266 1.377 sum -7.555 9.005 6.938 13.650 Atomic orbital electron populations 1.21730 0.96316 1.01087 1.00292 1.21597 0.94197 0.99231 1.01036 1.18841 0.93566 0.90410 0.85088 1.01714 1.21481 0.93120 1.36294 1.04084 0.93543 1.25666 1.02128 0.95448 0.95630 1.69993 1.36197 1.39987 1.09861 0.85699 0.81051 0.78130 0.77244 1.20834 1.20170 1.19845 1.60603 1.36523 1.03104 1.30348 1.22400 0.94801 0.88283 0.96137 0.93822 1.23093 0.97831 0.97124 0.99270 1.21069 0.96493 0.93524 0.95404 1.21897 1.00445 0.99525 0.97540 1.21858 0.94065 1.02050 1.00851 1.22322 0.97538 0.96120 0.98185 1.21864 0.98944 0.94874 0.94606 0.92739 1.21598 0.99793 1.00079 0.97076 0.92377 0.92511 0.94674 0.91578 0.94620 0.93146 0.85301 0.94466 0.91371 0.93141 0.91014 0.94369 0.92215 0.91372 0.93045 0.91950 0.89880 0.93044 0.91929 0.92688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 9.74 71.98 0.70 -4.53 16 2 C -0.12 -5.88 5.36 30.59 0.16 -5.71 16 3 C 0.23 11.73 1.90 44.17 0.08 11.81 16 4 H -0.03 -1.99 7.81 -2.38 -0.02 -2.01 16 5 C -0.51 -29.26 8.55 25.60 0.22 -29.04 16 6 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 7 C 0.01 0.52 5.29 84.66 0.45 0.97 16 8 N -0.92 -54.10 11.29 21.45 0.24 -53.85 16 9 Si 0.95 45.30 29.54 68.60 2.03 47.33 16 10 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.68 -28.59 5.10 -466.69 -2.38 -30.97 16 14 C 0.09 3.59 2.74 46.21 0.13 3.71 16 15 H 0.04 1.99 7.73 -2.39 -0.02 1.97 16 16 C -0.13 -4.29 5.08 31.67 0.16 -4.13 16 17 C -0.06 -1.62 0.94 -51.46 -0.05 -1.67 16 18 C -0.14 -3.40 8.15 71.98 0.59 -2.82 16 19 C -0.13 -2.61 8.15 71.98 0.59 -2.02 16 20 C -0.10 -2.55 5.67 31.32 0.18 -2.37 16 21 C -0.08 -2.55 3.47 -9.71 -0.03 -2.58 16 22 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 23 C -0.13 -3.42 8.29 71.98 0.60 -2.82 16 24 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.06 1.90 6.46 -2.39 -0.02 1.89 16 26 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.07 3.63 5.94 -2.39 -0.01 3.61 16 28 H 0.03 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 30 H 0.33 12.48 5.40 -89.70 -0.48 12.00 16 31 H 0.04 1.34 7.84 -2.38 -0.02 1.32 16 32 H 0.07 2.05 7.10 -2.39 -0.02 2.04 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 1.50 7.67 -2.38 -0.02 1.48 16 40 H 0.08 1.69 7.38 -2.39 -0.02 1.67 16 41 H 0.05 1.57 7.31 -2.39 -0.02 1.55 16 42 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.05 1.35 7.47 -2.38 -0.02 1.33 16 Total: -1.00 -60.95 324.40 4.11 -56.84 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.46 Total: 21.86 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 3.77 Total: -41.20 kcal Atomic # 7 Polarization: -82.69 SS G_CDS: -2.14 Total: -84.83 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -60.95 4.11 -56.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248843273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.409 kcal (2) G-P(sol) polarization free energy of solvation -60.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds