Wall clock time and date at job start Mon Mar 30 2020 17:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 H 1.09000 * 109.47376 * 305.67221 * 3 2 1 5 5 C 1.50698 * 109.47071 * 185.67487 * 3 2 1 6 6 H 1.08001 * 120.00058 * 239.99965 * 5 3 2 7 7 C 1.37880 * 120.00006 * 59.99923 * 5 3 2 8 8 N 1.31507 * 120.00125 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99776 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47630 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47198 * 120.00449 * 9 7 5 12 12 H 1.48501 * 109.46853 * 239.99869 * 9 7 5 13 13 N 1.46904 * 109.47402 * 65.67526 * 3 2 1 14 14 C 1.46903 * 111.00076 * 208.10618 * 13 3 2 15 15 H 1.09000 * 109.46721 * 32.84012 * 14 13 3 16 16 C 1.52998 * 109.46992 * 272.83921 * 14 13 3 17 17 C 1.52998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.52990 * 109.47416 * 59.99930 * 17 16 14 19 19 C 1.53008 * 109.47119 * 300.00196 * 18 17 16 20 20 H 1.08999 * 109.46827 * 299.99743 * 19 18 17 21 21 C 1.53001 * 109.46835 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.46755 * 152.84133 * 14 13 3 23 23 H 1.08999 * 109.47137 * 60.00166 * 22 14 13 24 24 C 1.52998 * 109.47197 * 299.99662 * 22 14 13 25 25 H 1.08994 * 109.46911 * 173.75729 * 1 2 3 26 26 H 1.09010 * 109.46842 * 293.75480 * 1 2 3 27 27 H 1.09002 * 109.47057 * 53.74739 * 1 2 3 28 28 H 1.09000 * 109.47218 * 240.00285 * 2 1 3 29 29 H 1.08996 * 109.47025 * 119.99494 * 2 1 3 30 30 H 0.96998 * 120.00303 * 179.97438 * 8 7 5 31 31 H 1.00904 * 110.99627 * 332.05891 * 13 3 2 32 32 H 1.08999 * 109.47488 * 300.00193 * 16 14 13 33 33 H 1.09000 * 109.47245 * 59.99927 * 16 14 13 34 34 H 1.09004 * 109.47400 * 180.02562 * 17 16 14 35 35 H 1.09010 * 109.46747 * 299.99524 * 17 16 14 36 36 H 1.09003 * 109.47305 * 180.02562 * 18 17 16 37 37 H 1.08999 * 109.47061 * 59.99795 * 18 17 16 38 38 H 1.08999 * 109.47330 * 299.99591 * 21 19 18 39 39 H 1.09007 * 109.46784 * 179.97438 * 21 19 18 40 40 H 1.09003 * 109.47319 * 60.00097 * 21 19 18 41 41 H 1.08999 * 109.47488 * 300.00289 * 24 22 14 42 42 H 1.08995 * 109.47162 * 60.00660 * 24 22 14 43 43 H 1.09003 * 109.46990 * 180.02562 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9849 -0.8348 5 6 3.5404 1.4449 -0.1405 6 1 4.1543 1.8864 0.6306 7 6 4.1295 0.8833 -1.2535 8 7 3.3820 0.3452 -2.1922 9 14 5.9894 0.8856 -1.4272 10 1 6.5964 1.5461 -0.2439 11 1 6.4796 -0.5131 -1.5198 12 1 6.3707 1.6260 -2.6567 13 7 1.6654 2.0944 1.2620 14 6 1.5128 3.5442 1.0807 15 1 1.1377 3.7473 0.0777 16 6 2.8695 4.2268 1.2659 17 6 2.7105 5.7369 1.0777 18 6 1.7217 6.2785 2.1119 19 6 0.3649 5.5957 1.9267 20 1 -0.0103 5.7994 0.9238 21 6 -0.6237 6.1370 2.9614 22 6 0.5238 4.0861 2.1147 23 1 0.8990 3.8829 3.1177 24 6 -0.8329 3.4035 1.9295 25 1 -0.3633 -1.0215 -0.1117 26 1 -0.3633 0.4140 0.9407 27 1 -0.3633 0.6077 -0.8287 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 3.7964 -0.0496 -2.9753 31 1 0.8247 1.6873 1.6436 32 1 3.2446 4.0236 2.2689 33 1 3.5741 3.8407 0.5293 34 1 3.6771 6.2232 1.2091 35 1 2.3352 5.9404 0.0746 36 1 1.6081 7.3542 1.9775 37 1 2.0970 6.0748 3.1148 38 1 -0.2482 5.9330 3.9642 39 1 -1.5904 5.6509 2.8292 40 1 -0.7371 7.2128 2.8277 41 1 -1.2080 3.6067 0.9265 42 1 -0.7197 2.3278 2.0640 43 1 -1.5376 3.7899 2.6658 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248898414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:03 Heat of formation + Delta-G solvation = -36.495621 kcal Electronic energy + Delta-G solvation = -18638.424103 eV Core-core repulsion = 16102.879281 eV Total energy + Delta-G solvation = -2535.544821 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.10931 -35.80076 -32.70161 -32.64901 -31.36995 -29.06535 -26.57160 -26.17961 -24.94856 -22.76132 -20.68275 -20.43210 -19.51821 -19.06229 -16.20087 -15.12518 -14.84845 -14.45321 -14.30873 -13.97589 -13.74835 -13.18457 -12.90186 -12.60081 -12.46364 -12.10647 -11.69107 -11.58704 -11.51934 -11.41951 -11.11574 -10.90601 -10.86239 -10.68202 -10.56005 -10.40106 -10.10848 -10.06381 -9.87373 -9.62253 -9.43326 -9.16366 -8.88781 -8.27910 -7.11280 -5.90903 -3.93494 3.34042 3.42202 3.47244 4.49222 4.87997 4.99370 5.05951 5.34542 5.39006 5.44000 5.60756 5.67026 5.71613 5.79084 5.86643 5.90308 6.07304 6.09590 6.14294 6.16776 6.19602 6.22425 6.24993 6.33767 6.39400 6.46349 6.56256 6.62957 6.71066 6.80208 6.88428 7.03928 7.14009 7.20203 7.30103 7.59239 7.84449 8.00906 8.43705 8.50043 8.87456 9.14894 9.70738 11.14550 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.024751 B = 0.007939 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.014039 B = 3526.002635 C = 4448.341736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.219 3.781 4 H 0.002 0.998 5 C -0.485 4.485 6 H 0.065 0.935 7 C 0.052 3.948 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.686 5.686 14 C 0.107 3.893 15 H 0.032 0.968 16 C -0.108 4.108 17 C -0.121 4.121 18 C -0.111 4.111 19 C -0.084 4.084 20 H 0.065 0.935 21 C -0.147 4.147 22 C -0.089 4.089 23 H 0.071 0.929 24 C -0.152 4.152 25 H 0.036 0.964 26 H 0.034 0.966 27 H 0.041 0.959 28 H 0.099 0.901 29 H 0.039 0.961 30 H 0.257 0.743 31 H 0.318 0.682 32 H 0.056 0.944 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.052 0.948 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.774 8.516 7.272 13.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.112 3.888 4 H 0.019 0.981 5 C -0.524 4.524 6 H 0.083 0.917 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.319 5.319 14 C -0.003 4.003 15 H 0.050 0.950 16 C -0.146 4.146 17 C -0.159 4.159 18 C -0.148 4.148 19 C -0.103 4.103 20 H 0.084 0.916 21 C -0.204 4.204 22 C -0.108 4.108 23 H 0.090 0.910 24 C -0.210 4.210 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.117 0.883 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.138 0.862 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.104 8.452 7.322 12.740 hybrid contribution 0.146 -0.061 -0.746 0.763 sum -5.958 8.391 6.575 12.212 Atomic orbital electron populations 1.21893 0.99717 0.99607 0.99455 1.21803 0.91152 1.00729 1.02973 1.19222 0.95455 0.89743 0.84390 0.98077 1.21325 0.91393 1.35674 1.03979 0.91722 1.24969 0.97833 0.95875 0.96053 1.69880 1.34445 1.39906 1.09617 0.86557 0.86198 0.77541 0.77816 1.19780 1.21244 1.21348 1.60763 1.38169 1.01419 1.31556 1.21353 0.93875 0.89556 0.95558 0.94971 1.21610 0.98247 0.92119 1.02609 1.21577 0.98277 0.97398 0.98621 1.21580 0.95101 0.98563 0.99598 1.21112 0.95187 0.94952 0.99083 0.91622 1.21884 0.99235 1.00142 0.99125 1.21351 0.95188 0.93845 1.00442 0.91032 1.21959 0.97073 1.00661 1.01256 0.94485 0.94707 0.93938 0.88300 0.94183 0.93282 0.86209 0.92544 0.89783 0.92636 0.92563 0.92905 0.92282 0.92918 0.92630 0.93270 0.93091 0.92426 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.65 37.16 0.36 -2.56 16 2 C -0.13 -3.04 5.34 -26.73 -0.14 -3.18 16 3 C 0.22 5.44 2.03 -68.86 -0.14 5.30 16 4 H 0.00 0.05 7.34 -51.93 -0.38 -0.34 16 5 C -0.48 -13.22 7.41 -34.44 -0.26 -13.48 16 6 H 0.06 1.79 6.88 -52.49 -0.36 1.43 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.68 11.29 55.43 0.63 -25.05 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.69 -14.50 6.16 -100.95 -0.62 -15.12 16 14 C 0.11 2.00 1.98 -67.71 -0.13 1.87 16 15 H 0.03 0.67 7.35 -51.93 -0.38 0.29 16 16 C -0.11 -2.01 5.10 -26.73 -0.14 -2.14 16 17 C -0.12 -1.84 5.92 -26.74 -0.16 -1.99 16 18 C -0.11 -1.45 5.20 -26.73 -0.14 -1.59 16 19 C -0.08 -1.11 2.25 -90.64 -0.20 -1.31 16 20 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 21 C -0.15 -1.60 8.84 37.16 0.33 -1.27 16 22 C -0.09 -1.34 1.90 -90.65 -0.17 -1.51 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 24 C -0.15 -2.11 8.61 37.16 0.32 -1.79 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.61 6.21 -51.92 -0.32 0.29 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.32 6.20 4.06 -39.29 -0.16 6.04 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.84 6.09 -51.93 -0.32 1.52 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.58 6.43 -51.92 -0.33 0.24 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.83 5.73 -51.93 -0.30 0.54 16 43 H 0.05 0.64 6.43 -51.93 -0.33 0.30 16 LS Contribution 314.44 15.07 4.74 4.74 Total: -1.00 -27.56 314.44 -8.67 -36.23 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -7.83 Total: 4.93 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: -0.57 Total: -22.30 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.00 Total: -40.18 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -27.56 -8.67 -36.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248898414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.261 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds