Wall clock time and date at job start Mon Mar 30 2020 17:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47018 * 2 1 4 4 H 1.09000 * 109.47376 * 305.67221 * 3 2 1 5 5 C 1.50698 * 109.47071 * 185.67487 * 3 2 1 6 6 H 1.08001 * 120.00058 * 239.99965 * 5 3 2 7 7 C 1.37880 * 120.00006 * 59.99923 * 5 3 2 8 8 N 1.31507 * 120.00125 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99776 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47630 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47198 * 120.00449 * 9 7 5 12 12 H 1.48501 * 109.46853 * 239.99869 * 9 7 5 13 13 N 1.46904 * 109.47402 * 65.67526 * 3 2 1 14 14 C 1.46903 * 111.00076 * 208.10618 * 13 3 2 15 15 H 1.09000 * 109.46721 * 32.84012 * 14 13 3 16 16 C 1.52998 * 109.46992 * 272.83921 * 14 13 3 17 17 C 1.52998 * 109.47052 * 180.02562 * 16 14 13 18 18 C 1.52990 * 109.47416 * 59.99930 * 17 16 14 19 19 C 1.53008 * 109.47119 * 300.00196 * 18 17 16 20 20 H 1.08999 * 109.46827 * 299.99743 * 19 18 17 21 21 C 1.53001 * 109.46835 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.46755 * 152.84133 * 14 13 3 23 23 H 1.08999 * 109.47137 * 60.00166 * 22 14 13 24 24 C 1.52998 * 109.47197 * 299.99662 * 22 14 13 25 25 H 1.08994 * 109.46911 * 173.75729 * 1 2 3 26 26 H 1.09010 * 109.46842 * 293.75480 * 1 2 3 27 27 H 1.09002 * 109.47057 * 53.74739 * 1 2 3 28 28 H 1.09000 * 109.47218 * 240.00285 * 2 1 3 29 29 H 1.08996 * 109.47025 * 119.99494 * 2 1 3 30 30 H 0.96998 * 120.00303 * 179.97438 * 8 7 5 31 31 H 1.00904 * 110.99627 * 332.05891 * 13 3 2 32 32 H 1.08999 * 109.47488 * 300.00193 * 16 14 13 33 33 H 1.09000 * 109.47245 * 59.99927 * 16 14 13 34 34 H 1.09004 * 109.47400 * 180.02562 * 17 16 14 35 35 H 1.09010 * 109.46747 * 299.99524 * 17 16 14 36 36 H 1.09003 * 109.47305 * 180.02562 * 18 17 16 37 37 H 1.08999 * 109.47061 * 59.99795 * 18 17 16 38 38 H 1.08999 * 109.47330 * 299.99591 * 21 19 18 39 39 H 1.09007 * 109.46784 * 179.97438 * 21 19 18 40 40 H 1.09003 * 109.47319 * 60.00097 * 21 19 18 41 41 H 1.08999 * 109.47488 * 300.00289 * 24 22 14 42 42 H 1.08995 * 109.47162 * 60.00660 * 24 22 14 43 43 H 1.09003 * 109.46990 * 180.02562 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5961 1.9849 -0.8348 5 6 3.5404 1.4449 -0.1405 6 1 4.1543 1.8864 0.6306 7 6 4.1295 0.8833 -1.2535 8 7 3.3820 0.3452 -2.1922 9 14 5.9894 0.8856 -1.4272 10 1 6.5964 1.5461 -0.2439 11 1 6.4796 -0.5131 -1.5198 12 1 6.3707 1.6260 -2.6567 13 7 1.6654 2.0944 1.2620 14 6 1.5128 3.5442 1.0807 15 1 1.1377 3.7473 0.0777 16 6 2.8695 4.2268 1.2659 17 6 2.7105 5.7369 1.0777 18 6 1.7217 6.2785 2.1119 19 6 0.3649 5.5957 1.9267 20 1 -0.0103 5.7994 0.9238 21 6 -0.6237 6.1370 2.9614 22 6 0.5238 4.0861 2.1147 23 1 0.8990 3.8829 3.1177 24 6 -0.8329 3.4035 1.9295 25 1 -0.3633 -1.0215 -0.1117 26 1 -0.3633 0.4140 0.9407 27 1 -0.3633 0.6077 -0.8287 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 3.7964 -0.0496 -2.9753 31 1 0.8247 1.6873 1.6436 32 1 3.2446 4.0236 2.2689 33 1 3.5741 3.8407 0.5293 34 1 3.6771 6.2232 1.2091 35 1 2.3352 5.9404 0.0746 36 1 1.6081 7.3542 1.9775 37 1 2.0970 6.0748 3.1148 38 1 -0.2482 5.9330 3.9642 39 1 -1.5904 5.6509 2.8292 40 1 -0.7371 7.2128 2.8277 41 1 -1.2080 3.6067 0.9265 42 1 -0.7197 2.3278 2.0640 43 1 -1.5376 3.7899 2.6658 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248898414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:03 Heat of formation + Delta-G solvation = -51.582608 kcal Electronic energy + Delta-G solvation = -18639.078323 eV Core-core repulsion = 16102.879281 eV Total energy + Delta-G solvation = -2536.199042 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.45054 -37.52515 -34.45717 -33.93357 -33.13329 -30.51829 -28.26796 -27.65192 -26.15987 -24.64214 -21.95756 -21.87764 -21.21995 -20.44375 -18.30154 -16.77350 -16.61517 -15.92558 -15.51062 -15.37782 -15.27030 -14.70139 -14.40361 -14.19654 -13.82696 -13.53043 -13.17953 -12.96540 -12.91983 -12.77867 -12.66396 -12.57375 -12.40491 -12.17033 -12.01636 -11.92503 -11.67576 -11.56770 -11.52643 -11.29165 -10.95822 -10.80640 -10.55869 -10.38090 -8.93933 -8.04030 -6.13848 1.38366 1.40664 1.52233 2.44477 3.20467 3.56611 3.87058 3.88857 4.04414 4.25870 4.37692 4.46592 4.53007 4.56331 4.59452 4.63571 4.68094 4.71528 4.75088 4.86679 4.97744 5.04436 5.06812 5.10395 5.15909 5.18030 5.24846 5.28814 5.32434 5.36578 5.43344 5.47800 5.58337 5.61513 5.63274 5.73433 5.80852 5.95036 6.41620 6.61801 7.00438 7.09836 7.54280 8.99505 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.024751 B = 0.007939 C = 0.006293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.014039 B = 3526.002635 C = 4448.341736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.228 3.772 4 H -0.037 1.037 5 C -0.497 4.497 6 H 0.054 0.946 7 C 0.006 3.994 8 N -0.923 5.923 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.686 5.686 14 C 0.106 3.894 15 H 0.005 0.995 16 C -0.105 4.105 17 C -0.117 4.117 18 C -0.106 4.106 19 C -0.083 4.083 20 H 0.058 0.942 21 C -0.141 4.141 22 C -0.081 4.081 23 H 0.073 0.927 24 C -0.150 4.150 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.036 0.964 30 H 0.258 0.742 31 H 0.328 0.672 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.049 0.951 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.632 9.719 8.967 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 C 0.120 3.880 4 H -0.019 1.019 5 C -0.536 4.536 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.565 5.565 9 Si 0.777 3.223 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.210 1.210 13 N -0.320 5.320 14 C -0.004 4.004 15 H 0.023 0.977 16 C -0.143 4.143 17 C -0.155 4.155 18 C -0.143 4.143 19 C -0.102 4.102 20 H 0.076 0.924 21 C -0.198 4.198 22 C -0.100 4.100 23 H 0.091 0.909 24 C -0.207 4.207 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.149 0.851 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.971 9.661 9.031 14.949 hybrid contribution 0.426 -0.426 -1.280 1.415 sum -6.545 9.235 7.750 13.718 Atomic orbital electron populations 1.21752 0.96362 1.01029 1.00367 1.21637 0.94197 0.99328 1.01141 1.18962 0.94096 0.90325 0.84642 1.01920 1.21553 0.92802 1.35386 1.03821 0.92827 1.25674 1.01925 0.95707 0.95861 1.70010 1.35968 1.40504 1.09968 0.85620 0.81346 0.77629 0.77736 1.19477 1.20665 1.20978 1.60680 1.38927 1.02890 1.29467 1.21405 0.95142 0.88198 0.95626 0.97712 1.21520 0.97140 0.94690 1.00939 1.21537 0.99862 0.94816 0.99249 1.21560 0.94141 0.99765 0.98832 1.21108 0.96057 0.93330 0.99717 0.92392 1.21830 0.98577 1.01026 0.98344 1.21281 0.94590 0.95461 0.98706 0.90858 1.21943 0.96843 1.00112 1.01785 0.92401 0.92415 0.94740 0.91475 0.94522 0.93287 0.85080 0.92722 0.94002 0.91526 0.93345 0.90580 0.91610 0.92274 0.91969 0.91798 0.93764 0.93224 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.31 9.65 71.98 0.69 -4.61 16 2 C -0.12 -6.02 5.34 30.59 0.16 -5.86 16 3 C 0.23 11.74 2.03 44.17 0.09 11.83 16 4 H -0.04 -2.14 7.34 -2.39 -0.02 -2.15 16 5 C -0.50 -28.10 7.41 25.60 0.19 -27.91 16 6 H 0.05 3.09 6.88 -2.91 -0.02 3.07 16 7 C 0.01 0.32 5.29 84.66 0.45 0.77 16 8 N -0.92 -54.44 11.29 21.45 0.24 -54.20 16 9 Si 0.95 45.28 29.54 68.60 2.03 47.31 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 N -0.69 -29.52 6.16 -473.31 -2.92 -32.43 16 14 C 0.11 4.06 1.98 44.91 0.09 4.15 16 15 H 0.00 0.21 7.35 -2.39 -0.02 0.20 16 16 C -0.10 -3.98 5.10 30.59 0.16 -3.83 16 17 C -0.12 -3.47 5.92 30.59 0.18 -3.29 16 18 C -0.11 -2.49 5.20 30.59 0.16 -2.33 16 19 C -0.08 -1.98 2.25 -10.81 -0.02 -2.01 16 20 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 21 C -0.14 -2.53 8.84 71.98 0.64 -1.89 16 22 C -0.08 -2.33 1.90 -10.81 -0.02 -2.35 16 23 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 24 C -0.15 -3.84 8.61 71.98 0.62 -3.22 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 1.94 6.21 -2.38 -0.01 1.92 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 3.70 5.94 -2.39 -0.01 3.68 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.33 12.67 4.06 -89.69 -0.36 12.31 16 32 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.04 1.92 6.09 -2.39 -0.01 1.90 16 34 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.05 6.43 -2.38 -0.02 1.03 16 40 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.05 1.34 5.73 -2.39 -0.01 1.33 16 43 H 0.08 1.65 6.43 -2.39 -0.02 1.64 16 Total: -1.00 -61.44 314.44 3.32 -58.12 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.59 Total: 21.75 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 3.38 Total: -40.55 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -2.67 Total: -86.63 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -61.44 3.32 -58.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248898414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.536 kcal (2) G-P(sol) polarization free energy of solvation -61.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds