Wall clock time and date at job start Mon Mar 30 2020 17:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46898 * 109.46714 * 2 1 4 4 C 1.46907 * 111.00293 * 288.90892 * 3 2 1 5 5 C 1.50698 * 109.47171 * 160.56336 * 4 3 2 6 6 H 1.08000 * 120.00039 * 4.49142 * 5 4 3 7 7 C 1.37880 * 119.99964 * 184.49944 * 5 4 3 8 8 N 1.31507 * 119.99787 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99876 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.46590 * 90.00436 * 9 7 5 11 11 H 1.48498 * 109.47051 * 210.00415 * 9 7 5 12 12 H 1.48497 * 109.47362 * 330.00937 * 9 7 5 13 13 C 1.46904 * 110.99786 * 164.95706 * 3 2 1 14 14 H 1.09007 * 109.47149 * 178.95070 * 13 3 2 15 15 C 1.53002 * 109.47023 * 58.95381 * 13 3 2 16 16 C 1.53001 * 109.46911 * 179.97438 * 15 13 3 17 17 C 1.53009 * 109.47013 * 60.00427 * 16 15 13 18 18 H 1.08999 * 109.46921 * 59.99472 * 17 16 15 19 19 C 1.52991 * 109.47078 * 180.02562 * 17 16 15 20 20 C 1.52994 * 109.46711 * 299.99631 * 17 16 15 21 21 H 1.09004 * 109.47686 * 300.00212 * 20 17 16 22 22 C 1.53002 * 109.47153 * 179.97438 * 20 17 16 23 23 C 1.52995 * 109.47273 * 298.95529 * 13 3 2 24 24 H 1.08991 * 109.47071 * 302.86201 * 1 2 3 25 25 H 1.08998 * 109.47107 * 62.86509 * 1 2 3 26 26 H 1.09008 * 109.46761 * 182.85913 * 1 2 3 27 27 H 1.08999 * 109.47198 * 240.00285 * 2 1 3 28 28 H 1.08993 * 109.46972 * 120.00004 * 2 1 3 29 29 H 1.08998 * 109.46947 * 280.56217 * 4 3 2 30 30 H 1.08997 * 109.46649 * 40.55905 * 4 3 2 31 31 H 0.97003 * 120.00305 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.47039 * 60.00460 * 15 13 3 33 33 H 1.08995 * 109.47562 * 299.99994 * 15 13 3 34 34 H 1.08999 * 109.47708 * 300.00381 * 16 15 13 35 35 H 1.09006 * 109.47179 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.47250 * 180.02562 * 19 17 16 37 37 H 1.09006 * 109.47133 * 299.99429 * 19 17 16 38 38 H 1.08997 * 109.47620 * 59.99378 * 19 17 16 39 39 H 1.09003 * 109.46648 * 60.00338 * 22 20 17 40 40 H 1.08995 * 109.46964 * 300.00525 * 22 20 17 41 41 H 1.09001 * 109.47287 * 179.97438 * 22 20 17 42 42 H 1.08997 * 109.47272 * 59.99528 * 23 13 3 43 43 H 1.09006 * 109.46714 * 300.00049 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7760 2.0296 -1.2975 5 6 1.8346 3.5264 -1.1336 6 1 2.1043 3.9551 -0.1797 7 6 1.5438 4.3488 -2.2015 8 7 1.5945 5.6550 -2.0583 9 14 1.0779 3.6073 -3.8515 10 1 -0.3942 3.4220 -3.9128 11 1 1.5082 4.5180 -4.9426 12 1 1.7493 2.2923 -4.0106 13 6 3.4438 1.4399 0.3560 14 1 3.7851 2.4748 0.3303 15 6 4.2519 0.6114 -0.6448 16 6 5.7353 0.6691 -0.2744 17 6 5.9319 0.1024 1.1332 18 1 5.5909 -0.9325 1.1590 19 6 7.4151 0.1607 1.5038 20 6 5.1238 0.9309 2.1338 21 1 5.4647 1.9659 2.1079 22 6 5.3198 0.3639 3.5413 23 6 3.6400 0.8729 1.7634 24 1 -0.3633 0.5576 0.8631 25 1 -0.3633 0.4687 -0.9145 26 1 -0.3633 -1.0265 0.0513 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 2.5377 1.7119 -2.0096 30 1 0.7914 1.7426 -1.6664 31 1 1.3903 6.2336 -2.8096 32 1 4.1122 1.0154 -1.6475 33 1 3.9107 -0.4234 -0.6192 34 1 6.0763 1.7041 -0.3003 35 1 6.3110 0.0785 -0.9871 36 1 7.5553 -0.2434 2.5064 37 1 7.9912 -0.4293 0.7909 38 1 7.7557 1.1958 1.4779 39 1 6.3766 0.4047 3.8055 40 1 4.9786 -0.6709 3.5669 41 1 4.7445 0.9544 4.2544 42 1 3.2986 -0.1619 1.7890 43 1 3.0642 1.4632 2.4763 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249796784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:13 Heat of formation + Delta-G solvation = -42.372370 kcal Electronic energy + Delta-G solvation = -18521.203131 eV Core-core repulsion = 15985.403475 eV Total energy + Delta-G solvation = -2535.799656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.76746 -37.88109 -34.74811 -33.28990 -32.70708 -31.39294 -29.03163 -27.63621 -25.68640 -24.20055 -23.04538 -22.69515 -20.65259 -19.98495 -18.88874 -16.86310 -16.60366 -15.95851 -15.67430 -15.40589 -15.02689 -14.99321 -14.87704 -14.49947 -13.88969 -13.67224 -13.35809 -13.02646 -12.87329 -12.83077 -12.71947 -12.63417 -12.46523 -12.37521 -12.04098 -11.96875 -11.88014 -11.63574 -11.52196 -11.39998 -11.12736 -10.90055 -10.79069 -10.75060 -8.83595 -8.28022 -6.29077 1.31126 1.32419 1.43238 2.32886 3.04226 3.24848 3.74056 3.84151 4.01895 4.13502 4.19604 4.23758 4.43303 4.53651 4.56593 4.56760 4.64144 4.73399 4.75509 4.77242 4.82928 4.86201 5.00828 5.02244 5.04972 5.07133 5.14770 5.17778 5.21085 5.22662 5.29475 5.35603 5.39908 5.42598 5.55220 5.59068 5.63987 5.69260 6.06776 6.52279 6.73711 6.77067 7.33527 8.89346 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.025037 B = 0.007173 C = 0.006500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.088506 B = 3902.708259 C = 4306.929709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.044 3.956 3 N -0.540 5.540 4 C 0.170 3.830 5 C -0.507 4.507 6 H 0.031 0.969 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.944 3.056 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.254 1.254 13 C 0.094 3.906 14 H 0.042 0.958 15 C -0.144 4.144 16 C -0.106 4.106 17 C -0.079 4.079 18 H 0.077 0.923 19 C -0.144 4.144 20 C -0.085 4.085 21 H 0.052 0.948 22 C -0.140 4.140 23 C -0.095 4.095 24 H 0.052 0.948 25 H 0.035 0.965 26 H 0.081 0.919 27 H 0.026 0.974 28 H 0.090 0.910 29 H -0.009 1.009 30 H 0.026 0.974 31 H 0.265 0.735 32 H 0.038 0.962 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.780 -16.284 6.514 19.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.084 4.084 3 N -0.263 5.263 4 C 0.043 3.957 5 C -0.545 4.545 6 H 0.050 0.950 7 C -0.190 4.190 8 N -0.592 5.592 9 Si 0.767 3.233 10 H -0.189 1.189 11 H -0.207 1.207 12 H -0.178 1.178 13 C -0.015 4.015 14 H 0.061 0.939 15 C -0.183 4.183 16 C -0.145 4.145 17 C -0.097 4.097 18 H 0.096 0.904 19 C -0.202 4.202 20 C -0.104 4.104 21 H 0.070 0.930 22 C -0.197 4.197 23 C -0.133 4.133 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.045 0.955 28 H 0.108 0.892 29 H 0.009 0.991 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.468 -15.865 6.786 18.802 hybrid contribution -0.031 0.393 -1.606 1.653 sum 7.436 -15.473 5.181 17.932 Atomic orbital electron populations 1.21772 0.95047 1.01870 1.01352 1.22218 0.96251 0.89221 1.00699 1.62117 1.16853 1.16122 1.31250 1.19965 0.95064 0.93115 0.87595 1.21275 1.45142 0.91082 0.97049 0.95041 1.25821 0.95347 0.95003 1.02854 1.70054 1.51651 1.04411 1.33058 0.85765 0.79485 0.79059 0.78962 1.18936 1.20652 1.17785 1.21545 0.86582 0.98059 0.95268 0.93922 1.22119 0.97002 1.00296 0.98906 1.21518 0.94673 1.00676 0.97587 1.21116 0.96096 0.99393 0.93119 0.90443 1.21859 0.94492 1.01661 1.02144 1.21139 0.93970 0.99269 0.96037 0.92979 1.21818 1.02237 1.01083 0.94578 1.21612 0.96437 1.00887 0.94340 0.92905 0.94549 0.90047 0.95549 0.89222 0.99122 0.95612 0.92558 0.94372 0.91101 0.93592 0.91095 0.91062 0.92139 0.93436 0.91264 0.91838 0.93095 0.90702 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 9.92 71.98 0.71 -3.70 16 2 C 0.04 1.43 4.62 86.30 0.40 1.83 16 3 N -0.54 -22.72 4.38 -875.51 -3.83 -26.55 16 4 C 0.17 8.39 3.54 85.55 0.30 8.69 16 5 C -0.51 -30.42 9.22 25.60 0.24 -30.18 16 6 H 0.03 2.12 7.85 -2.91 -0.02 2.10 16 7 C 0.01 0.38 5.47 84.66 0.46 0.85 16 8 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 9 Si 0.94 45.45 27.38 68.60 1.88 47.33 16 10 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.25 -11.51 6.67 99.48 0.66 -10.85 16 13 C 0.09 3.57 2.14 44.91 0.10 3.67 16 14 H 0.04 1.99 7.37 -2.38 -0.02 1.98 16 15 C -0.14 -4.78 4.58 30.60 0.14 -4.64 16 16 C -0.11 -2.91 5.20 30.60 0.16 -2.75 16 17 C -0.08 -1.75 2.25 -10.80 -0.02 -1.78 16 18 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 19 C -0.14 -2.63 8.84 71.98 0.64 -1.99 16 20 C -0.09 -2.11 2.25 -10.78 -0.02 -2.14 16 21 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 22 C -0.14 -2.68 8.84 71.98 0.64 -2.05 16 23 C -0.10 -2.83 4.33 30.61 0.13 -2.70 16 24 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.04 1.24 6.58 -2.39 -0.02 1.23 16 26 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 27 H 0.03 0.85 7.10 -2.39 -0.02 0.83 16 28 H 0.09 2.50 5.70 -2.39 -0.01 2.49 16 29 H -0.01 -0.43 5.26 -2.39 -0.01 -0.45 16 30 H 0.03 1.26 5.41 -2.39 -0.01 1.25 16 31 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 32 H 0.04 1.47 6.25 -2.39 -0.01 1.46 16 33 H 0.07 2.09 6.74 -2.39 -0.02 2.08 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.07 1.08 6.43 -2.39 -0.02 1.07 16 37 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 1.13 6.43 -2.39 -0.02 1.12 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.96 6.14 -2.39 -0.01 1.94 16 43 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 Total: -1.00 -67.36 312.92 3.12 -64.24 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.90 Total: 12.68 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 3.87 Total: -36.89 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -3.53 Total: -87.36 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.33 kcal Total: -67.36 3.12 -64.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249796784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.867 kcal (2) G-P(sol) polarization free energy of solvation -67.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds