Wall clock time and date at job start Mon Mar 30 2020 17:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46878 * 2 1 4 4 H 1.08998 * 109.47320 * 305.11279 * 3 2 1 5 5 C 1.50708 * 109.47014 * 185.11630 * 3 2 1 6 6 H 1.07999 * 119.99947 * 240.00661 * 5 3 2 7 7 C 1.37878 * 120.00071 * 59.99646 * 5 3 2 8 8 N 1.31519 * 119.99934 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99986 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47111 * 90.00231 * 9 7 5 11 11 H 1.48497 * 109.46973 * 210.00156 * 9 7 5 12 12 H 1.48495 * 109.47376 * 330.00460 * 9 7 5 13 13 N 1.46899 * 109.47312 * 65.11598 * 3 2 1 14 14 C 1.46896 * 111.00209 * 207.96933 * 13 3 2 15 15 H 1.09003 * 109.47210 * 33.03373 * 14 13 3 16 16 C 1.52990 * 109.47468 * 273.03174 * 14 13 3 17 17 C 1.53005 * 109.47570 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.46718 * 59.99936 * 17 16 14 19 19 H 1.09000 * 109.47075 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46870 * 59.99985 * 18 17 16 21 21 C 1.53003 * 109.46981 * 300.00480 * 18 17 16 22 22 C 1.52995 * 109.47409 * 60.00252 * 21 18 17 23 23 H 1.08998 * 109.47268 * 59.99452 * 22 21 18 24 24 C 1.52999 * 109.47087 * 180.02562 * 22 21 18 25 25 H 1.08998 * 109.47673 * 54.69089 * 1 2 3 26 26 H 1.09005 * 109.47491 * 174.69117 * 1 2 3 27 27 H 1.09000 * 109.47185 * 294.68905 * 1 2 3 28 28 H 1.09002 * 109.47013 * 240.00163 * 2 1 3 29 29 H 1.09002 * 109.47427 * 120.00569 * 2 1 3 30 30 H 0.96999 * 119.99573 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99527 * 84.01493 * 13 3 2 32 32 H 1.09000 * 109.47149 * 60.00158 * 16 14 13 33 33 H 1.08998 * 109.47398 * 299.99945 * 16 14 13 34 34 H 1.08998 * 109.47017 * 300.00548 * 17 16 14 35 35 H 1.08997 * 109.47595 * 179.97438 * 17 16 14 36 36 H 1.09004 * 109.46491 * 60.00240 * 20 18 17 37 37 H 1.09001 * 109.46861 * 179.97438 * 20 18 17 38 38 H 1.09000 * 109.47560 * 300.00083 * 20 18 17 39 39 H 1.09001 * 109.46728 * 180.02562 * 21 18 17 40 40 H 1.08995 * 109.46699 * 299.99421 * 21 18 17 41 41 H 1.08998 * 109.47601 * 59.99549 * 24 22 21 42 42 H 1.09000 * 109.46988 * 179.97438 * 24 22 21 43 43 H 1.09000 * 109.47051 * 299.99272 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6037 1.9821 -0.8406 5 6 3.5416 1.4444 -0.1267 6 1 4.1484 1.8884 0.6486 7 6 4.1409 0.8792 -1.2323 8 7 3.4020 0.3388 -2.1767 9 14 6.0023 0.8810 -1.3890 10 1 6.5524 -0.3515 -0.7695 11 1 6.3781 0.9233 -2.8250 12 1 6.5562 2.0723 -0.6970 13 7 1.6537 2.0984 1.2564 14 6 1.5059 3.5480 1.0697 15 1 1.1382 3.7492 0.0635 16 6 2.8628 4.2279 1.2623 17 6 2.7091 5.7377 1.0673 18 6 1.7140 6.2856 2.0923 19 1 1.6047 7.3612 1.9538 20 6 2.2298 6.0036 3.5050 21 6 0.3570 5.6055 1.8997 22 6 0.5108 4.0958 2.0948 23 1 0.8783 3.8950 3.1011 24 6 -0.8460 3.4157 1.9015 25 1 -0.3634 0.5939 -0.8386 26 1 -0.3634 -1.0233 -0.0951 27 1 -0.3633 0.4292 0.9337 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8236 -0.0585 -2.9546 31 1 2.3161 1.8939 1.9895 32 1 3.5716 3.8380 0.5318 33 1 3.2305 4.0269 2.2685 34 1 2.3416 5.9385 0.0610 35 1 3.6757 6.2222 1.2050 36 1 3.1965 6.4881 3.6421 37 1 1.5211 6.3943 4.2352 38 1 2.3394 4.9281 3.6439 39 1 -0.3520 5.9961 2.6297 40 1 -0.0104 5.8063 0.8934 41 1 -1.2131 3.6165 0.8951 42 1 -0.7363 2.3402 2.0401 43 1 -1.5552 3.8059 2.6315 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251337811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:42 Heat of formation + Delta-G solvation = -40.143678 kcal Electronic energy + Delta-G solvation = -18727.712197 eV Core-core repulsion = 16192.009184 eV Total energy + Delta-G solvation = -2535.703013 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.17715 -35.72462 -32.98501 -31.90227 -31.24864 -28.97720 -26.62139 -26.11142 -24.90006 -22.60227 -21.46854 -20.30396 -19.52495 -18.25705 -16.41258 -15.22229 -14.84966 -14.45293 -14.18128 -13.82811 -13.49068 -13.10276 -12.86475 -12.67323 -12.12821 -11.82934 -11.66024 -11.52842 -11.40238 -11.22305 -11.06646 -11.04288 -10.81907 -10.63542 -10.55810 -10.41322 -10.24782 -9.85779 -9.82872 -9.66506 -9.47631 -9.15838 -8.86364 -8.33857 -7.13079 -5.96455 -4.08428 3.27342 3.34877 3.36967 4.41016 4.97891 5.05514 5.11593 5.27603 5.47198 5.53253 5.64078 5.74653 5.83493 5.91452 5.95816 6.04684 6.11309 6.14453 6.23257 6.27806 6.34561 6.42437 6.47128 6.51853 6.53532 6.60938 6.67058 6.71809 6.76882 6.94856 6.99869 7.12488 7.21908 7.23496 7.51671 7.65074 7.82120 8.15354 8.22062 8.41705 8.74945 9.05845 9.58451 11.03341 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.022238 B = 0.008542 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.783814 B = 3277.155005 C = 4243.148368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.217 3.783 4 H 0.029 0.971 5 C -0.539 4.539 6 H 0.056 0.944 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.683 5.683 14 C 0.106 3.894 15 H 0.064 0.936 16 C -0.150 4.150 17 C -0.111 4.111 18 C -0.091 4.091 19 H 0.059 0.941 20 C -0.148 4.148 21 C -0.107 4.107 22 C -0.080 4.080 23 H 0.064 0.936 24 C -0.134 4.134 25 H 0.035 0.965 26 H 0.022 0.978 27 H 0.047 0.953 28 H 0.088 0.912 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.326 0.674 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 8.402 7.433 12.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.145 4.145 3 C 0.109 3.891 4 H 0.047 0.953 5 C -0.578 4.578 6 H 0.074 0.926 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.713 3.287 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.310 5.310 14 C -0.005 4.005 15 H 0.083 0.917 16 C -0.189 4.189 17 C -0.149 4.149 18 C -0.109 4.109 19 H 0.077 0.923 20 C -0.205 4.205 21 C -0.145 4.145 22 C -0.099 4.099 23 H 0.082 0.918 24 C -0.192 4.192 25 H 0.054 0.946 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.142 0.858 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.135 8.152 7.152 11.999 hybrid contribution 2.122 0.287 -0.321 2.165 sum -3.013 8.439 6.831 11.268 Atomic orbital electron populations 1.21697 0.99110 0.98118 1.00317 1.21501 0.92010 0.99507 1.01480 1.19171 0.92732 0.91045 0.86118 0.95263 1.21924 0.92820 1.37725 1.05341 0.92597 1.24937 0.97617 0.95166 0.95883 1.69884 1.34647 1.38440 1.09411 0.86717 0.86481 0.78347 0.77161 1.20755 1.21320 1.20099 1.60908 1.53000 1.06803 1.10332 1.21386 0.92651 0.88837 0.97597 0.91741 1.22417 1.00121 0.94295 1.02030 1.21534 0.98028 0.96942 0.98397 1.21093 0.95680 0.98704 0.95444 0.92299 1.21920 1.00038 1.02443 0.96120 1.21614 0.95991 0.95898 1.01045 1.21141 0.96152 0.93015 0.99631 0.91758 1.21682 0.95467 1.02087 0.99922 0.94565 0.95872 0.93428 0.89355 0.95236 0.92997 0.85768 0.89895 0.92759 0.92420 0.93006 0.93423 0.93451 0.91651 0.92783 0.92415 0.93768 0.91026 0.94676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.74 37.16 0.36 -2.41 16 2 C -0.11 -2.52 5.45 -26.73 -0.15 -2.67 16 3 C 0.22 5.21 1.98 -68.86 -0.14 5.07 16 4 H 0.03 0.79 7.35 -51.93 -0.38 0.41 16 5 C -0.54 -14.02 7.16 -34.44 -0.25 -14.27 16 6 H 0.06 1.44 6.75 -52.49 -0.35 1.09 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.89 -24.84 11.29 55.43 0.63 -24.21 16 9 Si 0.88 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 N -0.68 -13.70 4.85 -100.96 -0.49 -14.19 16 14 C 0.11 1.91 1.92 -67.72 -0.13 1.78 16 15 H 0.06 1.30 7.36 -51.93 -0.38 0.92 16 16 C -0.15 -2.61 4.54 -26.73 -0.12 -2.73 16 17 C -0.11 -1.65 5.45 -26.73 -0.15 -1.79 16 18 C -0.09 -1.17 3.20 -90.61 -0.29 -1.46 16 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 20 C -0.15 -1.80 8.50 37.16 0.32 -1.49 16 21 C -0.11 -1.43 4.73 -26.73 -0.13 -1.56 16 22 C -0.08 -1.21 2.16 -90.62 -0.20 -1.40 16 23 H 0.06 0.97 6.43 -51.93 -0.33 0.64 16 24 C -0.13 -2.01 9.04 37.16 0.34 -1.67 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.92 7.30 -51.93 -0.38 0.55 16 28 H 0.09 2.36 5.95 -51.93 -0.31 2.05 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.33 6.61 8.05 -39.29 -0.32 6.29 16 32 H 0.08 1.72 6.08 -51.93 -0.32 1.40 16 33 H 0.05 0.91 6.41 -51.93 -0.33 0.58 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.86 4.81 -51.93 -0.25 0.61 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.18 7.00 -51.93 -0.36 0.81 16 43 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 315.65 15.07 4.76 4.76 Total: -1.00 -25.95 315.65 -8.67 -34.62 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -7.93 Total: 5.95 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: -0.62 Total: -22.92 kcal Atomic # 7 Polarization: -38.53 SS G_CDS: 0.14 Total: -38.40 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -25.95 -8.67 -34.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251337811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.520 kcal (2) G-P(sol) polarization free energy of solvation -25.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds