Wall clock time and date at job start Mon Mar 30 2020 17:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46878 * 2 1 4 4 H 1.08998 * 109.47320 * 305.11279 * 3 2 1 5 5 C 1.50708 * 109.47014 * 185.11630 * 3 2 1 6 6 H 1.07999 * 119.99947 * 240.00661 * 5 3 2 7 7 C 1.37878 * 120.00071 * 59.99646 * 5 3 2 8 8 N 1.31519 * 119.99934 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99986 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47111 * 90.00231 * 9 7 5 11 11 H 1.48497 * 109.46973 * 210.00156 * 9 7 5 12 12 H 1.48495 * 109.47376 * 330.00460 * 9 7 5 13 13 N 1.46899 * 109.47312 * 65.11598 * 3 2 1 14 14 C 1.46896 * 111.00209 * 207.96933 * 13 3 2 15 15 H 1.09003 * 109.47210 * 33.03373 * 14 13 3 16 16 C 1.52990 * 109.47468 * 273.03174 * 14 13 3 17 17 C 1.53005 * 109.47570 * 179.97438 * 16 14 13 18 18 C 1.53005 * 109.46718 * 59.99936 * 17 16 14 19 19 H 1.09000 * 109.47075 * 179.97438 * 18 17 16 20 20 C 1.53006 * 109.46870 * 59.99985 * 18 17 16 21 21 C 1.53003 * 109.46981 * 300.00480 * 18 17 16 22 22 C 1.52995 * 109.47409 * 60.00252 * 21 18 17 23 23 H 1.08998 * 109.47268 * 59.99452 * 22 21 18 24 24 C 1.52999 * 109.47087 * 180.02562 * 22 21 18 25 25 H 1.08998 * 109.47673 * 54.69089 * 1 2 3 26 26 H 1.09005 * 109.47491 * 174.69117 * 1 2 3 27 27 H 1.09000 * 109.47185 * 294.68905 * 1 2 3 28 28 H 1.09002 * 109.47013 * 240.00163 * 2 1 3 29 29 H 1.09002 * 109.47427 * 120.00569 * 2 1 3 30 30 H 0.96999 * 119.99573 * 179.97438 * 8 7 5 31 31 H 1.00901 * 110.99527 * 84.01493 * 13 3 2 32 32 H 1.09000 * 109.47149 * 60.00158 * 16 14 13 33 33 H 1.08998 * 109.47398 * 299.99945 * 16 14 13 34 34 H 1.08998 * 109.47017 * 300.00548 * 17 16 14 35 35 H 1.08997 * 109.47595 * 179.97438 * 17 16 14 36 36 H 1.09004 * 109.46491 * 60.00240 * 20 18 17 37 37 H 1.09001 * 109.46861 * 179.97438 * 20 18 17 38 38 H 1.09000 * 109.47560 * 300.00083 * 20 18 17 39 39 H 1.09001 * 109.46728 * 180.02562 * 21 18 17 40 40 H 1.08995 * 109.46699 * 299.99421 * 21 18 17 41 41 H 1.08998 * 109.47601 * 59.99549 * 24 22 21 42 42 H 1.09000 * 109.46988 * 179.97438 * 24 22 21 43 43 H 1.09000 * 109.47051 * 299.99272 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6037 1.9821 -0.8406 5 6 3.5416 1.4444 -0.1267 6 1 4.1484 1.8884 0.6486 7 6 4.1409 0.8792 -1.2323 8 7 3.4020 0.3388 -2.1767 9 14 6.0023 0.8810 -1.3890 10 1 6.5524 -0.3515 -0.7695 11 1 6.3781 0.9233 -2.8250 12 1 6.5562 2.0723 -0.6970 13 7 1.6537 2.0984 1.2564 14 6 1.5059 3.5480 1.0697 15 1 1.1382 3.7492 0.0635 16 6 2.8628 4.2279 1.2623 17 6 2.7091 5.7377 1.0673 18 6 1.7140 6.2856 2.0923 19 1 1.6047 7.3612 1.9538 20 6 2.2298 6.0036 3.5050 21 6 0.3570 5.6055 1.8997 22 6 0.5108 4.0958 2.0948 23 1 0.8783 3.8950 3.1011 24 6 -0.8460 3.4157 1.9015 25 1 -0.3634 0.5939 -0.8386 26 1 -0.3634 -1.0233 -0.0951 27 1 -0.3633 0.4292 0.9337 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8236 -0.0585 -2.9546 31 1 2.3161 1.8939 1.9895 32 1 3.5716 3.8380 0.5318 33 1 3.2305 4.0269 2.2685 34 1 2.3416 5.9385 0.0610 35 1 3.6757 6.2222 1.2050 36 1 3.1965 6.4881 3.6421 37 1 1.5211 6.3943 4.2352 38 1 2.3394 4.9281 3.6439 39 1 -0.3520 5.9961 2.6297 40 1 -0.0104 5.8063 0.8934 41 1 -1.2131 3.6165 0.8951 42 1 -0.7363 2.3402 2.0401 43 1 -1.5552 3.8059 2.6315 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251337811.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:41 Heat of formation + Delta-G solvation = -53.218546 kcal Electronic energy + Delta-G solvation = -18728.279166 eV Core-core repulsion = 16192.009184 eV Total energy + Delta-G solvation = -2536.269982 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49120 -37.44636 -34.56466 -33.46933 -32.93580 -30.43867 -28.25753 -27.35725 -26.34939 -24.44387 -22.85120 -21.68167 -21.30210 -19.57054 -18.38897 -16.80204 -16.52729 -15.67639 -15.61447 -15.39014 -14.97871 -14.60095 -14.38841 -14.14185 -13.44711 -13.35395 -13.25892 -13.08153 -12.88118 -12.72436 -12.65830 -12.52657 -12.49323 -12.19784 -12.00028 -11.78473 -11.71394 -11.50130 -11.40663 -11.17664 -10.89658 -10.82907 -10.55976 -10.38842 -8.87932 -8.01115 -6.21807 1.36615 1.38711 1.46638 2.40782 3.17520 3.67510 3.88480 3.95324 4.17421 4.30177 4.40995 4.53530 4.60923 4.64523 4.69368 4.78627 4.79631 4.87005 4.90339 4.94335 5.00245 5.07734 5.16748 5.22556 5.24490 5.27076 5.28818 5.38166 5.39699 5.46184 5.55074 5.58571 5.65193 5.69804 5.71591 5.77637 5.84771 6.16978 6.26904 6.49708 6.92078 7.11092 7.48681 8.94568 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.022238 B = 0.008542 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.783814 B = 3277.155005 C = 4243.148368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.103 4.103 3 C 0.228 3.772 4 H -0.008 1.008 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.944 3.056 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.672 5.672 14 C 0.108 3.892 15 H 0.035 0.965 16 C -0.143 4.143 17 C -0.109 4.109 18 C -0.086 4.086 19 H 0.078 0.922 20 C -0.146 4.146 21 C -0.104 4.104 22 C -0.072 4.072 23 H 0.071 0.929 24 C -0.131 4.131 25 H 0.026 0.974 26 H 0.041 0.959 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.027 0.973 30 H 0.259 0.741 31 H 0.327 0.673 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.034 0.966 42 H 0.054 0.946 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.769 9.736 9.308 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.142 4.142 3 C 0.119 3.881 4 H 0.010 0.990 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.299 5.299 14 C -0.003 4.003 15 H 0.053 0.947 16 C -0.182 4.182 17 C -0.147 4.147 18 C -0.105 4.105 19 H 0.097 0.903 20 C -0.203 4.203 21 C -0.142 4.142 22 C -0.091 4.091 23 H 0.090 0.910 24 C -0.188 4.188 25 H 0.045 0.955 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.143 0.857 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.448 9.497 9.042 14.200 hybrid contribution 2.206 -0.108 -0.908 2.388 sum -3.241 9.389 8.134 12.839 Atomic orbital electron populations 1.21547 0.96558 0.99259 1.00574 1.21365 0.94286 0.98737 0.99786 1.18894 0.91530 0.91167 0.86527 0.99043 1.22214 0.94007 1.36933 1.05149 0.92700 1.25645 1.01560 0.95192 0.95836 1.70020 1.36120 1.39351 1.09846 0.85777 0.81808 0.78399 0.76954 1.20295 1.21315 1.19651 1.60872 1.52382 1.08257 1.08434 1.21421 0.93970 0.87633 0.97264 0.94695 1.22264 0.98594 0.96205 1.01094 1.21515 0.99382 0.94951 0.98852 1.21083 0.94566 0.99620 0.95189 0.90321 1.21893 1.00914 1.01727 0.95763 1.21602 0.96862 0.94253 1.01505 1.21066 0.95104 0.94392 0.98550 0.91023 1.21642 0.95910 1.01101 1.00185 0.95484 0.94025 0.92126 0.92432 0.95383 0.93166 0.85661 0.93882 0.91923 0.93400 0.92131 0.92827 0.91653 0.92931 0.90369 0.93019 0.94693 0.92685 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 9.74 71.98 0.70 -4.30 16 2 C -0.10 -4.99 5.45 30.59 0.17 -4.82 16 3 C 0.23 11.28 1.98 44.17 0.09 11.37 16 4 H -0.01 -0.48 7.35 -2.39 -0.02 -0.49 16 5 C -0.54 -29.04 7.16 25.60 0.18 -28.85 16 6 H 0.05 2.88 6.75 -2.91 -0.02 2.86 16 7 C 0.02 0.94 5.29 84.65 0.45 1.38 16 8 N -0.91 -52.81 11.29 21.45 0.24 -52.57 16 9 Si 0.94 43.78 29.54 68.60 2.03 45.80 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 N -0.67 -27.29 4.85 -473.32 -2.29 -29.59 16 14 C 0.11 3.90 1.92 44.91 0.09 3.98 16 15 H 0.03 1.47 7.36 -2.39 -0.02 1.45 16 16 C -0.14 -4.97 4.54 30.59 0.14 -4.83 16 17 C -0.11 -3.12 5.45 30.60 0.17 -2.95 16 18 C -0.09 -1.98 3.20 -10.79 -0.03 -2.02 16 19 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 20 C -0.15 -3.06 8.50 71.98 0.61 -2.45 16 21 C -0.10 -2.49 4.73 30.59 0.14 -2.34 16 22 C -0.07 -2.05 2.16 -10.79 -0.02 -2.07 16 23 H 0.07 1.98 6.43 -2.39 -0.02 1.96 16 24 C -0.13 -3.69 9.04 71.98 0.65 -3.04 16 25 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.06 2.31 7.30 -2.39 -0.02 2.29 16 28 H 0.06 3.16 5.95 -2.39 -0.01 3.15 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.33 13.26 8.05 -89.69 -0.72 12.53 16 32 H 0.04 1.83 6.08 -2.39 -0.01 1.82 16 33 H 0.06 2.06 6.41 -2.39 -0.02 2.04 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 38 H 0.05 1.24 4.81 -2.39 -0.01 1.23 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.05 1.73 7.00 -2.39 -0.02 1.71 16 43 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -56.84 315.65 3.54 -53.30 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.23 Total: 24.00 kcal Atomic # 6 Polarization: -44.28 SS G_CDS: 3.33 Total: -40.95 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -2.05 Total: -82.16 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -56.84 3.54 -53.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251337811.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.085 kcal (2) G-P(sol) polarization free energy of solvation -56.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds