Wall clock time and date at job start Mon Mar 30 2020 17:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46849 * 2 1 4 4 H 1.09006 * 109.46891 * 176.73708 * 3 2 1 5 5 C 1.50695 * 109.47722 * 56.73874 * 3 2 1 6 6 H 1.07995 * 120.00126 * 240.00405 * 5 3 2 7 7 C 1.37884 * 119.99907 * 59.99540 * 5 3 2 8 8 N 1.31509 * 120.00123 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99868 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47229 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47267 * 120.00191 * 9 7 5 12 12 H 1.48505 * 109.47286 * 240.00044 * 9 7 5 13 13 N 1.46903 * 109.47136 * 296.73223 * 3 2 1 14 14 C 1.46894 * 111.00521 * 273.21746 * 13 3 2 15 15 H 1.09003 * 108.76867 * 35.62117 * 14 13 3 16 16 C 1.54066 * 108.87731 * 277.11375 * 14 13 3 17 17 C 1.54068 * 112.81759 * 197.50257 * 16 14 13 18 18 C 1.50463 * 112.49826 * 318.28304 * 17 16 14 19 19 C 1.54246 * 108.52446 * 94.14757 * 18 17 16 20 20 C 1.45537 * 112.40705 * 280.01394 * 19 18 17 21 21 C 1.50474 * 108.87800 * 154.13210 * 14 13 3 22 22 H 1.08997 * 109.78614 * 95.12737 * 21 14 13 23 23 C 1.52997 * 109.63023 * 334.64133 * 21 14 13 24 24 H 1.09002 * 109.47015 * 174.59017 * 1 2 3 25 25 H 1.09004 * 109.47217 * 294.58480 * 1 2 3 26 26 H 1.09002 * 109.46897 * 54.58427 * 1 2 3 27 27 H 1.08996 * 109.47475 * 239.99720 * 2 1 3 28 28 H 1.08997 * 109.46935 * 119.99563 * 2 1 3 29 29 H 0.96998 * 120.00300 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99882 * 149.26123 * 13 3 2 31 31 H 1.09002 * 108.81538 * 76.64189 * 16 14 13 32 32 H 1.09003 * 108.81397 * 318.36429 * 16 14 13 33 33 H 1.08998 * 108.87405 * 197.50234 * 17 16 14 34 34 H 1.09000 * 108.87539 * 79.06313 * 17 16 14 35 35 H 1.09000 * 109.63075 * 334.43979 * 18 17 16 36 36 H 1.09000 * 109.79146 * 213.95261 * 18 17 16 37 37 H 1.09006 * 108.89148 * 159.26031 * 19 18 17 38 38 H 1.09001 * 108.81266 * 40.71819 * 19 18 17 39 39 H 1.09006 * 108.89235 * 301.18198 * 20 19 18 40 40 H 1.08994 * 108.81932 * 182.63792 * 20 19 18 41 41 H 1.09006 * 109.46986 * 300.97515 * 23 21 14 42 42 H 1.08998 * 109.47070 * 60.97076 * 23 21 14 43 43 H 1.08997 * 109.46994 * 180.97503 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1284 1.4431 0.0585 5 6 1.4728 2.1760 1.1880 6 1 0.8585 3.0516 1.0391 7 6 1.7379 1.7289 2.4651 8 7 2.4862 0.6628 2.6465 9 14 1.0343 2.6376 3.9376 10 1 0.2319 3.7955 3.4676 11 1 0.1669 1.7190 4.7180 12 1 2.1442 3.1206 4.7980 13 7 1.6158 2.1118 -1.2370 14 6 2.5816 1.8796 -2.3191 15 1 2.9816 0.8704 -2.2216 16 6 3.7371 2.8893 -2.1811 17 6 4.5674 3.0270 -3.4716 18 6 4.8276 1.7009 -4.1332 19 6 3.7389 1.4634 -5.1997 20 6 2.4924 0.9826 -4.6224 21 6 1.8701 1.9958 -3.6399 22 1 1.9853 3.0056 -4.0336 23 6 0.3840 1.6837 -3.4524 24 1 -0.3633 -1.0231 -0.0969 25 1 -0.3634 0.4276 0.9345 26 1 -0.3633 0.5956 -0.8375 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.6731 0.3485 3.5449 30 1 1.4748 3.0992 -1.0838 31 1 4.3934 2.5642 -1.3739 32 1 3.3232 3.8642 -1.9237 33 1 5.5222 3.4932 -3.2284 34 1 4.0308 3.6700 -4.1692 35 1 4.7897 0.9063 -3.3880 36 1 5.8088 1.7114 -4.6077 37 1 4.1024 0.7279 -5.9174 38 1 3.5477 2.4009 -5.7217 39 1 2.6855 0.0498 -4.0924 40 1 1.7832 0.7903 -5.4275 41 1 0.2721 0.6760 -3.0522 42 1 -0.0530 2.4011 -2.7579 43 1 -0.1256 1.7516 -4.4136 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251351054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:45 Heat of formation + Delta-G solvation = -29.259006 kcal Electronic energy + Delta-G solvation = -18771.431776 eV Core-core repulsion = 16236.200758 eV Total energy + Delta-G solvation = -2535.231018 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.18719 -35.81302 -33.24887 -32.66763 -31.09262 -29.27004 -26.87796 -25.85372 -23.47290 -23.09629 -22.36914 -20.22101 -19.29568 -18.34078 -16.28127 -15.21426 -14.89035 -14.81552 -14.10851 -13.94954 -13.41606 -13.22536 -13.05452 -12.64513 -12.48141 -12.11214 -11.84082 -11.53301 -11.35697 -11.07948 -10.99014 -10.90056 -10.61902 -10.39310 -10.34952 -10.23513 -10.06467 -10.05091 -9.85143 -9.68722 -9.47616 -9.25276 -8.70181 -8.43582 -7.06569 -5.98322 -4.02773 3.29502 3.38034 3.41543 4.43043 4.84403 4.93725 5.10595 5.31845 5.37352 5.45737 5.51736 5.59648 5.67105 5.75542 5.93607 5.99403 6.16989 6.24227 6.25931 6.31495 6.35770 6.43797 6.47170 6.54733 6.56558 6.60772 6.68212 6.76473 6.82512 6.91199 6.99406 7.11642 7.30051 7.43497 7.58238 7.80660 7.85643 7.92481 8.32089 8.48259 8.76801 9.08593 9.61850 11.07754 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.031548 B = 0.006948 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.336968 B = 4028.683375 C = 4369.011086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.099 4.099 3 C 0.215 3.785 4 H 0.000 1.000 5 C -0.510 4.510 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.677 5.677 14 C 0.094 3.906 15 H 0.067 0.933 16 C -0.142 4.142 17 C -0.112 4.112 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.115 4.115 21 C -0.075 4.075 22 H 0.058 0.942 23 C -0.118 4.118 24 H 0.010 0.990 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.008 0.992 28 H 0.081 0.919 29 H 0.259 0.741 30 H 0.327 0.673 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 1.837 -12.538 12.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.138 4.138 3 C 0.108 3.892 4 H 0.017 0.983 5 C -0.548 4.548 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.306 5.306 14 C -0.017 4.017 15 H 0.085 0.915 16 C -0.182 4.182 17 C -0.150 4.150 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.153 4.153 21 C -0.094 4.094 22 H 0.077 0.923 23 C -0.176 4.176 24 H 0.029 0.971 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.027 0.973 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.253 1.199 -12.553 12.673 hybrid contribution 0.531 0.976 1.267 1.686 sum 1.785 2.175 -11.286 11.632 Atomic orbital electron populations 1.21462 0.97613 0.96984 1.01596 1.21394 0.95020 0.98387 0.98949 1.19110 0.93391 0.91538 0.85202 0.98254 1.21253 1.31269 1.11789 0.90522 0.92427 1.24875 0.95189 0.95018 0.98766 1.69901 1.37988 1.23417 1.21500 0.86579 0.78827 0.79856 0.82964 1.19835 1.21079 1.21253 1.61069 1.45110 1.16291 1.08148 1.21347 0.90120 0.98108 0.92131 0.91512 1.22680 0.98499 1.00057 0.96934 1.21270 0.99219 0.97129 0.97413 1.21341 0.97674 0.98384 0.98161 1.20478 0.95846 1.00884 0.97836 1.20547 0.96447 0.99415 0.98854 1.20890 0.95986 0.97919 0.94601 0.92340 1.21543 0.94273 1.02955 0.98788 0.97118 0.93069 0.93220 0.97317 0.90046 0.93143 0.85518 0.92340 0.92590 0.93174 0.92561 0.91515 0.92642 0.93017 0.92626 0.92305 0.92772 0.92668 0.91393 0.95563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.44 37.16 0.35 -2.33 16 2 C -0.10 -2.39 5.56 -26.73 -0.15 -2.54 16 3 C 0.22 5.22 2.08 -68.87 -0.14 5.08 16 4 H 0.00 0.00 7.14 -51.93 -0.37 -0.38 16 5 C -0.51 -13.50 7.28 -34.44 -0.25 -13.75 16 6 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -25.16 11.35 55.43 0.63 -24.53 16 9 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 13 N -0.68 -13.57 3.27 -101.70 -0.33 -13.91 16 14 C 0.09 1.62 1.65 -68.42 -0.11 1.51 16 15 H 0.07 1.28 5.66 -51.93 -0.29 0.99 16 16 C -0.14 -2.32 5.13 -25.62 -0.13 -2.45 16 17 C -0.11 -1.49 5.31 -27.44 -0.15 -1.64 16 18 C -0.12 -1.48 5.61 -27.35 -0.15 -1.64 16 19 C -0.11 -1.33 5.27 -29.60 -0.16 -1.49 16 20 C -0.11 -1.51 4.68 -29.60 -0.14 -1.65 16 21 C -0.07 -1.11 2.35 -91.23 -0.21 -1.32 16 22 H 0.06 0.84 7.00 -51.93 -0.36 0.48 16 23 C -0.12 -1.82 8.28 37.16 0.31 -1.51 16 24 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.05 1.24 7.34 -51.93 -0.38 0.86 16 26 H 0.05 1.06 7.19 -51.93 -0.37 0.69 16 27 H 0.01 0.19 7.49 -51.93 -0.39 -0.20 16 28 H 0.08 2.20 6.16 -51.93 -0.32 1.88 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.33 6.62 7.67 -39.29 -0.30 6.31 16 31 H 0.06 1.07 7.59 -51.93 -0.39 0.68 16 32 H 0.06 0.92 7.71 -51.93 -0.40 0.52 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.71 6.64 -51.93 -0.34 0.36 16 35 H 0.07 0.94 6.98 -51.93 -0.36 0.58 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.63 7.46 -51.93 -0.39 0.24 16 39 H 0.06 0.84 7.47 -51.93 -0.39 0.45 16 40 H 0.05 0.66 7.97 -51.93 -0.41 0.25 16 41 H 0.05 0.93 7.79 -51.93 -0.40 0.53 16 42 H 0.07 1.12 7.22 -51.93 -0.38 0.75 16 43 H 0.03 0.35 8.13 -51.93 -0.42 -0.07 16 LS Contribution 312.49 15.07 4.71 4.71 Total: -1.00 -26.54 312.49 -8.95 -35.50 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.91 Total: 4.17 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -1.03 Total: -22.12 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.30 Total: -38.44 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.54 -8.95 -35.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251351054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.238 kcal (2) G-P(sol) polarization free energy of solvation -26.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds