Wall clock time and date at job start Mon Mar 30 2020 17:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46849 * 2 1 4 4 H 1.09006 * 109.46891 * 176.73708 * 3 2 1 5 5 C 1.50695 * 109.47722 * 56.73874 * 3 2 1 6 6 H 1.07995 * 120.00126 * 240.00405 * 5 3 2 7 7 C 1.37884 * 119.99907 * 59.99540 * 5 3 2 8 8 N 1.31509 * 120.00123 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99868 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47229 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47267 * 120.00191 * 9 7 5 12 12 H 1.48505 * 109.47286 * 240.00044 * 9 7 5 13 13 N 1.46903 * 109.47136 * 296.73223 * 3 2 1 14 14 C 1.46894 * 111.00521 * 273.21746 * 13 3 2 15 15 H 1.09003 * 108.76867 * 35.62117 * 14 13 3 16 16 C 1.54066 * 108.87731 * 277.11375 * 14 13 3 17 17 C 1.54068 * 112.81759 * 197.50257 * 16 14 13 18 18 C 1.50463 * 112.49826 * 318.28304 * 17 16 14 19 19 C 1.54246 * 108.52446 * 94.14757 * 18 17 16 20 20 C 1.45537 * 112.40705 * 280.01394 * 19 18 17 21 21 C 1.50474 * 108.87800 * 154.13210 * 14 13 3 22 22 H 1.08997 * 109.78614 * 95.12737 * 21 14 13 23 23 C 1.52997 * 109.63023 * 334.64133 * 21 14 13 24 24 H 1.09002 * 109.47015 * 174.59017 * 1 2 3 25 25 H 1.09004 * 109.47217 * 294.58480 * 1 2 3 26 26 H 1.09002 * 109.46897 * 54.58427 * 1 2 3 27 27 H 1.08996 * 109.47475 * 239.99720 * 2 1 3 28 28 H 1.08997 * 109.46935 * 119.99563 * 2 1 3 29 29 H 0.96998 * 120.00300 * 179.97438 * 8 7 5 30 30 H 1.00902 * 110.99882 * 149.26123 * 13 3 2 31 31 H 1.09002 * 108.81538 * 76.64189 * 16 14 13 32 32 H 1.09003 * 108.81397 * 318.36429 * 16 14 13 33 33 H 1.08998 * 108.87405 * 197.50234 * 17 16 14 34 34 H 1.09000 * 108.87539 * 79.06313 * 17 16 14 35 35 H 1.09000 * 109.63075 * 334.43979 * 18 17 16 36 36 H 1.09000 * 109.79146 * 213.95261 * 18 17 16 37 37 H 1.09006 * 108.89148 * 159.26031 * 19 18 17 38 38 H 1.09001 * 108.81266 * 40.71819 * 19 18 17 39 39 H 1.09006 * 108.89235 * 301.18198 * 20 19 18 40 40 H 1.08994 * 108.81932 * 182.63792 * 20 19 18 41 41 H 1.09006 * 109.46986 * 300.97515 * 23 21 14 42 42 H 1.08998 * 109.47070 * 60.97076 * 23 21 14 43 43 H 1.08997 * 109.46994 * 180.97503 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1284 1.4431 0.0585 5 6 1.4728 2.1760 1.1880 6 1 0.8585 3.0516 1.0391 7 6 1.7379 1.7289 2.4651 8 7 2.4862 0.6628 2.6465 9 14 1.0343 2.6376 3.9376 10 1 0.2319 3.7955 3.4676 11 1 0.1669 1.7190 4.7180 12 1 2.1442 3.1206 4.7980 13 7 1.6158 2.1118 -1.2370 14 6 2.5816 1.8796 -2.3191 15 1 2.9816 0.8704 -2.2216 16 6 3.7371 2.8893 -2.1811 17 6 4.5674 3.0270 -3.4716 18 6 4.8276 1.7009 -4.1332 19 6 3.7389 1.4634 -5.1997 20 6 2.4924 0.9826 -4.6224 21 6 1.8701 1.9958 -3.6399 22 1 1.9853 3.0056 -4.0336 23 6 0.3840 1.6837 -3.4524 24 1 -0.3633 -1.0231 -0.0969 25 1 -0.3634 0.4276 0.9345 26 1 -0.3633 0.5956 -0.8375 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.6731 0.3485 3.5449 30 1 1.4748 3.0992 -1.0838 31 1 4.3934 2.5642 -1.3739 32 1 3.3232 3.8642 -1.9237 33 1 5.5222 3.4932 -3.2284 34 1 4.0308 3.6700 -4.1692 35 1 4.7897 0.9063 -3.3880 36 1 5.8088 1.7114 -4.6077 37 1 4.1024 0.7279 -5.9174 38 1 3.5477 2.4009 -5.7217 39 1 2.6855 0.0498 -4.0924 40 1 1.7832 0.7903 -5.4275 41 1 0.2721 0.6760 -3.0522 42 1 -0.0530 2.4011 -2.7579 43 1 -0.1256 1.7516 -4.4136 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251351054.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:45 Heat of formation + Delta-G solvation = -42.160204 kcal Electronic energy + Delta-G solvation = -18771.991214 eV Core-core repulsion = 16236.200758 eV Total energy + Delta-G solvation = -2535.790456 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47599 -37.49861 -34.80256 -33.96773 -32.96660 -30.82018 -28.27787 -27.62172 -25.23273 -24.60586 -23.58925 -21.38600 -21.02972 -19.81647 -18.23288 -16.89553 -16.37607 -16.04476 -15.74190 -15.14004 -14.96995 -14.91415 -14.54841 -14.15433 -13.80058 -13.65458 -13.31383 -13.13448 -12.88079 -12.77305 -12.59024 -12.43856 -12.19465 -12.14920 -11.77322 -11.68102 -11.44048 -11.35153 -11.27490 -11.12536 -10.97455 -10.86039 -10.68800 -10.52299 -8.79620 -8.07951 -6.19109 1.39115 1.42106 1.52339 2.42878 3.21053 3.69739 3.74907 3.88042 4.15717 4.23550 4.33370 4.38347 4.53702 4.57329 4.63908 4.72422 4.83008 4.88425 4.96194 4.99112 4.99577 5.09571 5.20486 5.26404 5.29319 5.32150 5.36653 5.40784 5.46732 5.48401 5.51536 5.55976 5.66348 5.71881 5.73795 5.83764 5.92107 5.96829 6.30816 6.58435 6.90245 7.12509 7.49835 8.97439 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.031548 B = 0.006948 C = 0.006407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.336968 B = 4028.683375 C = 4369.011086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.093 4.093 3 C 0.226 3.774 4 H -0.040 1.040 5 C -0.518 4.518 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.951 3.049 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.285 1.285 13 N -0.668 5.668 14 C 0.099 3.901 15 H 0.042 0.958 16 C -0.138 4.138 17 C -0.106 4.106 18 C -0.119 4.119 19 C -0.111 4.111 20 C -0.110 4.110 21 C -0.070 4.070 22 H 0.072 0.928 23 C -0.114 4.114 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.059 0.941 27 H 0.014 0.986 28 H 0.050 0.950 29 H 0.259 0.741 30 H 0.327 0.673 31 H 0.025 0.975 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.035 0.965 42 H 0.053 0.947 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.013 2.799 -14.444 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.132 4.132 3 C 0.117 3.883 4 H -0.022 1.022 5 C -0.557 4.557 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.777 3.223 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.211 1.211 13 N -0.297 5.297 14 C -0.012 4.012 15 H 0.060 0.940 16 C -0.177 4.177 17 C -0.144 4.144 18 C -0.157 4.157 19 C -0.148 4.148 20 C -0.148 4.148 21 C -0.089 4.089 22 H 0.091 0.909 23 C -0.171 4.171 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.078 0.922 27 H 0.033 0.967 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.145 0.855 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.651 2.169 -14.478 14.654 hybrid contribution 0.750 0.661 1.838 2.092 sum 1.401 2.829 -12.640 13.029 Atomic orbital electron populations 1.21315 0.95984 0.98250 1.00792 1.21253 0.96312 0.97961 0.97663 1.18836 0.90821 0.92019 0.86635 1.02243 1.21521 1.30957 1.11771 0.91461 0.92545 1.25610 0.95547 0.95736 1.01400 1.70041 1.39117 1.24723 1.21938 0.85617 0.78115 0.78849 0.79720 1.19025 1.20897 1.21081 1.61034 1.45887 1.15903 1.06895 1.21384 0.90181 0.97040 0.92579 0.93964 1.22598 0.97986 0.99240 0.97909 1.21235 0.99138 0.98094 0.95895 1.21355 0.99303 0.96973 0.98022 1.20463 0.94594 1.02120 0.97647 1.20509 0.97625 0.98000 0.98634 1.20855 0.95437 0.99344 0.93225 0.90931 1.21480 0.94730 1.01269 0.99668 0.95166 0.95167 0.92170 0.96711 0.93137 0.93229 0.85538 0.95585 0.92742 0.92398 0.90812 0.93877 0.90705 0.91337 0.91080 0.94038 0.90996 0.94570 0.92767 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.77 9.44 71.98 0.68 -4.09 16 2 C -0.09 -4.63 5.56 30.59 0.17 -4.46 16 3 C 0.23 11.33 2.08 44.17 0.09 11.42 16 4 H -0.04 -2.29 7.14 -2.38 -0.02 -2.31 16 5 C -0.52 -28.01 7.28 25.60 0.19 -27.83 16 6 H 0.06 3.01 7.59 -2.91 -0.02 2.99 16 7 C 0.02 0.88 5.30 84.66 0.45 1.32 16 8 N -0.92 -53.47 11.35 21.45 0.24 -53.22 16 9 Si 0.95 43.89 29.54 68.60 2.03 45.91 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 13 N -0.67 -27.21 3.27 -475.67 -1.56 -28.77 16 14 C 0.10 3.43 1.65 44.46 0.07 3.50 16 15 H 0.04 1.68 5.66 -2.39 -0.01 1.67 16 16 C -0.14 -4.53 5.13 31.32 0.16 -4.37 16 17 C -0.11 -2.63 5.31 30.13 0.16 -2.47 16 18 C -0.12 -2.77 5.61 30.20 0.17 -2.61 16 19 C -0.11 -2.26 5.27 28.74 0.15 -2.11 16 20 C -0.11 -2.63 4.68 28.74 0.13 -2.50 16 21 C -0.07 -1.94 2.35 -11.19 -0.03 -1.96 16 22 H 0.07 1.86 7.00 -2.39 -0.02 1.84 16 23 C -0.11 -3.30 8.28 71.98 0.60 -2.70 16 24 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.03 1.45 7.34 -2.39 -0.02 1.44 16 26 H 0.06 2.55 7.19 -2.39 -0.02 2.53 16 27 H 0.01 0.68 7.49 -2.39 -0.02 0.66 16 28 H 0.05 2.83 6.16 -2.39 -0.01 2.81 16 29 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 30 H 0.33 13.33 7.67 -89.69 -0.69 12.64 16 31 H 0.03 0.99 7.59 -2.39 -0.02 0.97 16 32 H 0.05 1.78 7.71 -2.39 -0.02 1.76 16 33 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.61 6.64 -2.39 -0.02 1.60 16 35 H 0.04 1.21 6.98 -2.39 -0.02 1.19 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.07 1.28 7.46 -2.39 -0.02 1.26 16 39 H 0.04 1.14 7.47 -2.38 -0.02 1.12 16 40 H 0.07 1.50 7.97 -2.39 -0.02 1.48 16 41 H 0.04 1.17 7.79 -2.38 -0.02 1.15 16 42 H 0.05 1.71 7.22 -2.39 -0.02 1.69 16 43 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 Total: -1.00 -58.10 312.49 3.98 -54.12 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.27 Total: 20.82 kcal Atomic # 6 Polarization: -41.85 SS G_CDS: 3.00 Total: -38.86 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -1.31 Total: -81.99 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -58.10 3.98 -54.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251351054.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.957 kcal (2) G-P(sol) polarization free energy of solvation -58.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds