Wall clock time and date at job start Mon Mar 30 2020 17:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46785 * 2 1 4 4 H 1.08997 * 109.46862 * 305.67153 * 3 2 1 5 5 C 1.50700 * 109.46591 * 185.67462 * 3 2 1 6 6 H 1.08004 * 119.99802 * 239.99271 * 5 3 2 7 7 C 1.37876 * 119.99804 * 60.00293 * 5 3 2 8 8 N 1.31509 * 120.00652 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99594 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47321 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47122 * 119.99904 * 9 7 5 12 12 H 1.48507 * 109.47095 * 239.99517 * 9 7 5 13 13 N 1.46901 * 109.47294 * 65.67634 * 3 2 1 14 14 C 1.46898 * 110.99697 * 208.10524 * 13 3 2 15 15 H 1.08997 * 109.47516 * 32.83662 * 14 13 3 16 16 C 1.53003 * 109.47082 * 272.84092 * 14 13 3 17 17 C 1.52995 * 109.47038 * 180.02562 * 16 14 13 18 18 H 1.09006 * 109.47101 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47066 * 299.99582 * 17 16 14 20 20 C 1.52999 * 109.47126 * 60.00131 * 17 16 14 21 21 C 1.53000 * 109.47138 * 299.99315 * 20 17 16 22 22 C 1.52999 * 109.47035 * 152.84016 * 14 13 3 23 23 H 1.09006 * 109.47076 * 60.00055 * 22 14 13 24 24 C 1.52995 * 109.47371 * 299.99771 * 22 14 13 25 25 H 1.08996 * 109.46843 * 173.75576 * 1 2 3 26 26 H 1.09006 * 109.47075 * 293.75261 * 1 2 3 27 27 H 1.09000 * 109.46915 * 53.75220 * 1 2 3 28 28 H 1.09000 * 109.46979 * 240.00214 * 2 1 3 29 29 H 1.08999 * 109.46957 * 119.99524 * 2 1 3 30 30 H 0.97004 * 120.00585 * 180.02562 * 8 7 5 31 31 H 1.00901 * 110.99867 * 332.05517 * 13 3 2 32 32 H 1.09003 * 109.47027 * 60.00086 * 16 14 13 33 33 H 1.09006 * 109.46706 * 300.00320 * 16 14 13 34 34 H 1.09005 * 109.47027 * 180.02562 * 19 17 16 35 35 H 1.08993 * 109.47331 * 299.99909 * 19 17 16 36 36 H 1.09001 * 109.46901 * 60.00843 * 19 17 16 37 37 H 1.09005 * 109.46962 * 179.97438 * 20 17 16 38 38 H 1.08997 * 109.47658 * 60.00039 * 20 17 16 39 39 H 1.09002 * 109.46840 * 179.97438 * 21 20 17 40 40 H 1.08997 * 109.47437 * 300.00859 * 21 20 17 41 41 H 1.08997 * 109.47140 * 300.00362 * 24 22 14 42 42 H 1.09005 * 109.47013 * 59.99889 * 24 22 14 43 43 H 1.09002 * 109.47601 * 179.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5960 1.9848 -0.8348 5 6 3.5404 1.4449 -0.1405 6 1 4.1543 1.8865 0.6306 7 6 4.1294 0.8833 -1.2535 8 7 3.3820 0.3453 -2.1923 9 14 5.9893 0.8868 -1.4279 10 1 6.5962 1.5482 -0.2449 11 1 6.4804 -0.5115 -1.5200 12 1 6.3697 1.6271 -2.6578 13 7 1.6653 2.0944 1.2620 14 6 1.5128 3.5442 1.0807 15 1 1.1377 3.7474 0.0776 16 6 2.8694 4.2269 1.2658 17 6 2.7104 5.7369 1.0775 18 1 3.6769 6.2233 1.2098 19 6 2.1836 6.0226 -0.3302 20 6 1.7216 6.2784 2.1118 21 6 0.3649 5.5958 1.9266 22 6 0.5237 4.0862 2.1145 23 1 0.8989 3.8830 3.1176 24 6 -0.8329 3.4035 1.9294 25 1 -0.3633 -1.0215 -0.1118 26 1 -0.3633 0.4140 0.9407 27 1 -0.3633 0.6076 -0.8288 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7964 -0.0501 -2.9751 31 1 0.8247 1.6873 1.6436 32 1 3.5740 3.8407 0.5292 33 1 3.2446 4.0236 2.2689 34 1 2.0708 7.0984 -0.4645 35 1 2.8881 5.6368 -1.0670 36 1 1.2171 5.5363 -0.4621 37 1 1.6086 7.3543 1.9779 38 1 2.0969 6.0749 3.1147 39 1 -0.3394 5.9814 2.6638 40 1 -0.0104 5.7993 0.9237 41 1 -1.2080 3.6067 0.9264 42 1 -0.7197 2.3278 2.0640 43 1 -1.5374 3.7893 2.6663 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251384210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:58 Heat of formation + Delta-G solvation = -34.116203 kcal Electronic energy + Delta-G solvation = -18839.323039 eV Core-core repulsion = 16303.881397 eV Total energy + Delta-G solvation = -2535.441642 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.22042 -35.76247 -33.32468 -31.95220 -31.09774 -28.45691 -27.33048 -26.16680 -24.83118 -22.78637 -21.45806 -20.31612 -19.35315 -18.21760 -16.19394 -15.53070 -14.81142 -14.35256 -14.15306 -13.95163 -13.59490 -13.27101 -12.85365 -12.59284 -12.39025 -11.94400 -11.83572 -11.72820 -11.59494 -11.13069 -11.05769 -10.97538 -10.84867 -10.62752 -10.51535 -10.34881 -10.08576 -9.91922 -9.88156 -9.62410 -9.44257 -9.13216 -8.87486 -8.27542 -7.09289 -5.90611 -3.93083 3.33925 3.42189 3.47201 4.49366 4.96419 5.07221 5.11270 5.35718 5.41266 5.46141 5.63025 5.65603 5.79186 5.85688 5.91971 6.00174 6.07362 6.14177 6.16585 6.20190 6.21506 6.27943 6.36471 6.38370 6.45755 6.46888 6.61320 6.68320 6.69486 6.83604 6.88666 7.05933 7.14208 7.21106 7.30727 7.59449 7.84606 8.01142 8.44227 8.50482 8.87836 9.15169 9.71075 11.14723 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.009158 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.774830 B = 3056.832109 C = 4007.425315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.220 3.780 4 H 0.001 0.999 5 C -0.484 4.484 6 H 0.064 0.936 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.287 1.287 13 N -0.687 5.687 14 C 0.106 3.894 15 H 0.038 0.962 16 C -0.103 4.103 17 C -0.093 4.093 18 H 0.061 0.939 19 C -0.148 4.148 20 C -0.112 4.112 21 C -0.111 4.111 22 C -0.097 4.097 23 H 0.071 0.929 24 C -0.150 4.150 25 H 0.036 0.964 26 H 0.034 0.966 27 H 0.041 0.959 28 H 0.099 0.901 29 H 0.039 0.961 30 H 0.257 0.743 31 H 0.318 0.682 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.003 8.435 6.199 12.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.113 3.887 4 H 0.019 0.981 5 C -0.523 4.523 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.214 1.214 13 N -0.320 5.320 14 C -0.004 4.004 15 H 0.055 0.945 16 C -0.141 4.141 17 C -0.112 4.112 18 H 0.080 0.920 19 C -0.205 4.205 20 C -0.149 4.149 21 C -0.149 4.149 22 C -0.116 4.116 23 H 0.089 0.911 24 C -0.208 4.208 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.117 0.883 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.138 0.862 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.335 8.372 6.246 11.729 hybrid contribution 0.154 -0.066 -0.715 0.734 sum -5.181 8.307 5.531 11.244 Atomic orbital electron populations 1.21894 0.99734 0.99603 0.99444 1.21809 0.91139 1.00767 1.02969 1.19211 0.95439 0.89703 0.84376 0.98105 1.21312 0.91379 1.35626 1.03939 0.91760 1.24962 0.97769 0.95908 0.96069 1.69880 1.34399 1.39896 1.09622 0.86573 0.86285 0.77533 0.77814 1.19777 1.21269 1.21364 1.60753 1.38177 1.01520 1.31570 1.21387 0.93844 0.89407 0.95753 0.94465 1.21636 0.98307 0.91625 1.02489 1.21146 0.97843 0.97479 0.94722 0.92021 1.21905 1.01864 0.99877 0.96832 1.21548 0.95596 0.98634 0.99130 1.21567 0.96871 0.95104 1.01338 1.21349 0.95239 0.94474 1.00500 0.91102 1.21899 0.96925 1.00789 1.01160 0.94494 0.94715 0.93943 0.88297 0.94195 0.93304 0.86239 0.89715 0.92606 0.93882 0.92534 0.92245 0.92887 0.92360 0.92813 0.91987 0.93070 0.92349 0.93185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 9.65 37.16 0.36 -2.56 16 2 C -0.13 -3.03 5.34 -26.73 -0.14 -3.18 16 3 C 0.22 5.42 2.03 -68.86 -0.14 5.28 16 4 H 0.00 0.04 7.34 -51.93 -0.38 -0.34 16 5 C -0.48 -13.12 7.41 -34.44 -0.26 -13.37 16 6 H 0.06 1.78 6.88 -52.48 -0.36 1.42 16 7 C 0.05 1.45 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -25.54 11.29 55.43 0.63 -24.91 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.69 -14.46 6.16 -100.95 -0.62 -15.08 16 14 C 0.11 1.97 1.70 -67.71 -0.12 1.85 16 15 H 0.04 0.76 5.64 -51.93 -0.29 0.47 16 16 C -0.10 -1.89 4.63 -26.73 -0.12 -2.02 16 17 C -0.09 -1.41 3.19 -90.62 -0.29 -1.69 16 18 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 19 C -0.15 -2.22 8.50 37.16 0.32 -1.90 16 20 C -0.11 -1.46 5.45 -26.73 -0.15 -1.60 16 21 C -0.11 -1.46 4.93 -26.75 -0.13 -1.59 16 22 C -0.10 -1.45 2.37 -90.64 -0.21 -1.67 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 C -0.15 -2.08 8.97 37.16 0.33 -1.75 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.03 0.61 6.21 -51.93 -0.32 0.28 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.10 2.63 5.94 -51.93 -0.31 2.33 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.32 6.18 4.06 -39.29 -0.16 6.02 16 32 H 0.08 1.85 6.09 -51.93 -0.32 1.53 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.92 4.81 -51.93 -0.25 0.67 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.83 6.43 -51.93 -0.33 0.49 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.84 5.73 -51.93 -0.30 0.55 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 311.05 15.07 4.69 4.69 Total: -1.00 -27.40 311.05 -8.63 -36.02 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.65 Total: 5.59 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -0.64 Total: -22.84 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.00 Total: -40.00 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.40 -8.63 -36.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251384210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.908 kcal (2) G-P(sol) polarization free energy of solvation -27.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds