Wall clock time and date at job start Mon Mar 30 2020 17:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46785 * 2 1 4 4 H 1.08997 * 109.46862 * 305.67153 * 3 2 1 5 5 C 1.50700 * 109.46591 * 185.67462 * 3 2 1 6 6 H 1.08004 * 119.99802 * 239.99271 * 5 3 2 7 7 C 1.37876 * 119.99804 * 60.00293 * 5 3 2 8 8 N 1.31509 * 120.00652 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99594 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47321 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47122 * 119.99904 * 9 7 5 12 12 H 1.48507 * 109.47095 * 239.99517 * 9 7 5 13 13 N 1.46901 * 109.47294 * 65.67634 * 3 2 1 14 14 C 1.46898 * 110.99697 * 208.10524 * 13 3 2 15 15 H 1.08997 * 109.47516 * 32.83662 * 14 13 3 16 16 C 1.53003 * 109.47082 * 272.84092 * 14 13 3 17 17 C 1.52995 * 109.47038 * 180.02562 * 16 14 13 18 18 H 1.09006 * 109.47101 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47066 * 299.99582 * 17 16 14 20 20 C 1.52999 * 109.47126 * 60.00131 * 17 16 14 21 21 C 1.53000 * 109.47138 * 299.99315 * 20 17 16 22 22 C 1.52999 * 109.47035 * 152.84016 * 14 13 3 23 23 H 1.09006 * 109.47076 * 60.00055 * 22 14 13 24 24 C 1.52995 * 109.47371 * 299.99771 * 22 14 13 25 25 H 1.08996 * 109.46843 * 173.75576 * 1 2 3 26 26 H 1.09006 * 109.47075 * 293.75261 * 1 2 3 27 27 H 1.09000 * 109.46915 * 53.75220 * 1 2 3 28 28 H 1.09000 * 109.46979 * 240.00214 * 2 1 3 29 29 H 1.08999 * 109.46957 * 119.99524 * 2 1 3 30 30 H 0.97004 * 120.00585 * 180.02562 * 8 7 5 31 31 H 1.00901 * 110.99867 * 332.05517 * 13 3 2 32 32 H 1.09003 * 109.47027 * 60.00086 * 16 14 13 33 33 H 1.09006 * 109.46706 * 300.00320 * 16 14 13 34 34 H 1.09005 * 109.47027 * 180.02562 * 19 17 16 35 35 H 1.08993 * 109.47331 * 299.99909 * 19 17 16 36 36 H 1.09001 * 109.46901 * 60.00843 * 19 17 16 37 37 H 1.09005 * 109.46962 * 179.97438 * 20 17 16 38 38 H 1.08997 * 109.47658 * 60.00039 * 20 17 16 39 39 H 1.09002 * 109.46840 * 179.97438 * 21 20 17 40 40 H 1.08997 * 109.47437 * 300.00859 * 21 20 17 41 41 H 1.08997 * 109.47140 * 300.00362 * 24 22 14 42 42 H 1.09005 * 109.47013 * 59.99889 * 24 22 14 43 43 H 1.09002 * 109.47601 * 179.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5960 1.9848 -0.8348 5 6 3.5404 1.4449 -0.1405 6 1 4.1543 1.8865 0.6306 7 6 4.1294 0.8833 -1.2535 8 7 3.3820 0.3453 -2.1923 9 14 5.9893 0.8868 -1.4279 10 1 6.5962 1.5482 -0.2449 11 1 6.4804 -0.5115 -1.5200 12 1 6.3697 1.6271 -2.6578 13 7 1.6653 2.0944 1.2620 14 6 1.5128 3.5442 1.0807 15 1 1.1377 3.7474 0.0776 16 6 2.8694 4.2269 1.2658 17 6 2.7104 5.7369 1.0775 18 1 3.6769 6.2233 1.2098 19 6 2.1836 6.0226 -0.3302 20 6 1.7216 6.2784 2.1118 21 6 0.3649 5.5958 1.9266 22 6 0.5237 4.0862 2.1145 23 1 0.8989 3.8830 3.1176 24 6 -0.8329 3.4035 1.9294 25 1 -0.3633 -1.0215 -0.1118 26 1 -0.3633 0.4140 0.9407 27 1 -0.3633 0.6076 -0.8288 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.7964 -0.0501 -2.9751 31 1 0.8247 1.6873 1.6436 32 1 3.5740 3.8407 0.5292 33 1 3.2446 4.0236 2.2689 34 1 2.0708 7.0984 -0.4645 35 1 2.8881 5.6368 -1.0670 36 1 1.2171 5.5363 -0.4621 37 1 1.6086 7.3543 1.9779 38 1 2.0969 6.0749 3.1147 39 1 -0.3394 5.9814 2.6638 40 1 -0.0104 5.7993 0.9237 41 1 -1.2080 3.6067 0.9264 42 1 -0.7197 2.3278 2.0640 43 1 -1.5374 3.7893 2.6663 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251384210.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:48:58 Heat of formation + Delta-G solvation = -49.153700 kcal Electronic energy + Delta-G solvation = -18839.975114 eV Core-core repulsion = 16303.881397 eV Total energy + Delta-G solvation = -2536.093717 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.57249 -37.50262 -34.80359 -33.74338 -32.71539 -29.83254 -28.73432 -28.09012 -26.02953 -24.66889 -22.82570 -21.68376 -21.16878 -19.53163 -18.23935 -17.00860 -16.73134 -15.86573 -15.61729 -15.26016 -14.98516 -14.76377 -14.60079 -14.02958 -13.80354 -13.48331 -13.29680 -13.19309 -12.94389 -12.81984 -12.71519 -12.50458 -12.30938 -12.28000 -11.99190 -11.85871 -11.63043 -11.53039 -11.50448 -11.23003 -10.89642 -10.79324 -10.56318 -10.36627 -8.89547 -8.03146 -6.12556 1.37756 1.40292 1.51601 2.44565 3.21302 3.61736 3.86640 3.90009 4.13128 4.25081 4.36362 4.44210 4.48648 4.55032 4.57766 4.67291 4.69807 4.75043 4.78128 4.86682 4.97826 5.01248 5.08464 5.11516 5.18097 5.21328 5.23638 5.30216 5.35030 5.36938 5.41058 5.46956 5.57042 5.62298 5.69801 5.73302 5.81622 5.96477 6.42786 6.64225 7.01667 7.11692 7.55359 9.00101 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.009158 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.774830 B = 3056.832109 C = 4007.425315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.125 4.125 3 C 0.230 3.770 4 H -0.036 1.036 5 C -0.494 4.494 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.922 5.922 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.284 1.284 13 N -0.689 5.689 14 C 0.107 3.893 15 H 0.014 0.986 16 C -0.099 4.099 17 C -0.090 4.090 18 H 0.069 0.931 19 C -0.144 4.144 20 C -0.106 4.106 21 C -0.108 4.108 22 C -0.091 4.091 23 H 0.072 0.928 24 C -0.148 4.148 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.257 0.743 31 H 0.328 0.672 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.049 0.951 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.947 9.833 7.782 14.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.164 4.164 3 C 0.122 3.878 4 H -0.019 1.019 5 C -0.533 4.533 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.563 5.563 9 Si 0.774 3.226 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.210 1.210 13 N -0.322 5.322 14 C -0.003 4.003 15 H 0.032 0.968 16 C -0.137 4.137 17 C -0.109 4.109 18 H 0.087 0.913 19 C -0.202 4.202 20 C -0.144 4.144 21 C -0.145 4.145 22 C -0.110 4.110 23 H 0.090 0.910 24 C -0.205 4.205 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.149 0.851 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.069 0.931 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.286 9.775 7.843 14.021 hybrid contribution 0.457 -0.492 -1.204 1.378 sum -5.829 9.283 6.639 12.815 Atomic orbital electron populations 1.21751 0.96376 1.01004 1.00368 1.21646 0.94189 0.99428 1.01103 1.18935 0.94012 0.90236 0.84650 1.01883 1.21527 0.92809 1.35240 1.03703 0.92964 1.25647 1.01733 0.95803 0.95922 1.70008 1.35843 1.40512 1.09955 0.85659 0.81610 0.77587 0.77706 1.19524 1.20727 1.21029 1.60668 1.38947 1.03126 1.29497 1.21420 0.94986 0.87889 0.96011 0.96771 1.21542 0.97238 0.94345 1.00605 1.21130 0.99304 0.94840 0.95661 0.91276 1.21870 1.00632 1.01442 0.96216 1.21524 0.94582 0.99917 0.98329 1.21569 0.97581 0.93281 1.02117 1.21298 0.94679 0.96153 0.98837 0.90976 1.21882 0.96699 1.00197 1.01767 0.92459 0.92430 0.94700 0.91477 0.94601 0.93342 0.85136 0.94089 0.93062 0.91087 0.94993 0.93076 0.90411 0.91727 0.90046 0.92243 0.93623 0.93240 0.90364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 9.65 71.98 0.69 -4.59 16 2 C -0.12 -6.03 5.34 30.60 0.16 -5.87 16 3 C 0.23 11.76 2.03 44.17 0.09 11.85 16 4 H -0.04 -2.10 7.34 -2.39 -0.02 -2.12 16 5 C -0.49 -27.83 7.41 25.60 0.19 -27.64 16 6 H 0.05 3.01 6.88 -2.91 -0.02 2.99 16 7 C 0.01 0.35 5.29 84.66 0.45 0.80 16 8 N -0.92 -54.17 11.29 21.45 0.24 -53.93 16 9 Si 0.95 45.33 29.54 68.60 2.03 47.36 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 13 N -0.69 -29.45 6.16 -473.30 -2.92 -32.37 16 14 C 0.11 4.00 1.70 44.92 0.08 4.07 16 15 H 0.01 0.61 5.64 -2.39 -0.01 0.59 16 16 C -0.10 -3.73 4.63 30.59 0.14 -3.59 16 17 C -0.09 -2.64 3.19 -10.80 -0.03 -2.68 16 18 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 19 C -0.14 -4.28 8.50 71.98 0.61 -3.67 16 20 C -0.11 -2.43 5.45 30.59 0.17 -2.26 16 21 C -0.11 -2.48 4.93 30.58 0.15 -2.33 16 22 C -0.09 -2.56 2.37 -10.81 -0.03 -2.58 16 23 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 24 C -0.15 -3.75 8.97 71.98 0.65 -3.11 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 1.93 6.21 -2.38 -0.01 1.91 16 27 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 3.69 5.94 -2.39 -0.01 3.67 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 31 H 0.33 12.60 4.06 -89.69 -0.36 12.24 16 32 H 0.04 1.87 6.09 -2.39 -0.01 1.86 16 33 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 34 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.58 4.81 -2.39 -0.01 1.57 16 37 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.43 6.43 -2.39 -0.02 1.41 16 41 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.05 1.33 5.73 -2.38 -0.01 1.31 16 43 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 Total: -1.00 -61.25 311.05 3.27 -57.98 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 0.60 Total: 22.55 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 3.32 Total: -41.59 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -2.67 Total: -86.30 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -61.25 3.27 -57.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251384210.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.830 kcal (2) G-P(sol) polarization free energy of solvation -61.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds