Wall clock time and date at job start Mon Mar 30 2020 17:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47026 * 2 1 4 4 C 1.53007 * 109.46775 * 119.99497 * 2 1 3 5 5 C 1.53001 * 109.46775 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47531 * 299.99902 * 5 4 2 7 7 C 1.53011 * 109.46836 * 59.99916 * 6 5 4 8 8 C 1.52991 * 109.47135 * 300.00333 * 7 6 5 9 9 C 1.52998 * 109.47472 * 299.99768 * 8 7 6 10 10 N 1.46906 * 109.47014 * 179.97438 * 8 7 6 11 11 C 1.46901 * 110.99793 * 59.99753 * 10 8 7 12 12 C 1.53000 * 109.46769 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46616 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47104 * 119.99966 * 18 16 14 21 21 H 1.48489 * 109.47200 * 240.00246 * 18 16 14 22 22 H 1.09002 * 109.47026 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47232 * 300.00371 * 1 2 3 24 24 H 1.09001 * 109.46911 * 60.00343 * 1 2 3 25 25 H 1.09002 * 109.46933 * 60.00447 * 4 2 1 26 26 H 1.08994 * 109.47349 * 300.00061 * 4 2 1 27 27 H 1.09001 * 109.46911 * 180.02562 * 5 4 2 28 28 H 1.09002 * 109.47026 * 60.00503 * 5 4 2 29 29 H 1.09006 * 109.47206 * 300.00788 * 6 5 4 30 30 H 1.08995 * 109.47212 * 179.97438 * 6 5 4 31 31 H 1.08997 * 109.46934 * 179.97438 * 7 6 5 32 32 H 1.09006 * 109.46511 * 60.00447 * 7 6 5 33 33 H 1.09002 * 109.47145 * 300.00868 * 9 8 7 34 34 H 1.09001 * 109.46994 * 60.00116 * 9 8 7 35 35 H 1.08995 * 109.47718 * 180.02562 * 9 8 7 36 36 H 1.00898 * 110.99995 * 296.04676 * 10 8 7 37 37 H 1.09001 * 109.46874 * 60.00179 * 11 10 8 38 38 H 1.08992 * 109.47407 * 300.00197 * 11 10 8 39 39 H 1.09002 * 109.47398 * 300.00295 * 12 11 10 40 40 H 1.09001 * 109.47194 * 60.00475 * 12 11 10 41 41 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 42 42 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 43 43 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5700 -0.7217 1.2491 6 6 4.0795 -1.4435 -0.0001 7 6 3.5695 -0.7223 -1.2494 8 6 2.0396 -0.7217 -1.2491 9 6 1.5290 -2.1640 -1.2487 10 7 1.5499 -0.0288 -2.4484 11 6 2.0205 -0.6948 -3.6702 12 6 1.4910 0.0535 -4.8952 13 6 1.9805 -0.6405 -6.1677 14 6 1.4595 0.0968 -7.3743 15 1 0.8414 0.9731 -7.2463 16 6 1.7728 -0.3466 -8.6417 17 7 2.5260 -1.4134 -8.7976 18 14 1.1264 0.5670 -10.1373 19 1 0.3085 1.7247 -9.6947 20 1 2.2686 1.0515 -10.9533 21 1 0.2887 -0.3486 -10.9527 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6766 -1.7489 1.2494 26 1 1.6766 -0.2073 2.1393 27 1 3.9333 -1.2359 2.1389 28 1 3.9337 0.3058 1.2488 29 1 3.7157 -2.4710 0.0002 30 1 5.1695 -1.4434 -0.0005 31 1 3.9329 -1.2362 -2.1393 32 1 3.9333 0.3053 -1.2497 33 1 1.8920 -2.6782 -2.1386 34 1 1.8923 -2.6778 -0.3587 35 1 0.4390 -2.1636 -1.2490 36 1 1.8197 0.9434 -2.4397 37 1 1.6567 -1.7222 -3.6871 38 1 3.1103 -0.6951 -3.6872 39 1 0.4011 0.0533 -4.8780 40 1 1.8545 1.0810 -4.8785 41 1 3.0704 -0.6407 -6.1852 42 1 1.6168 -1.6679 -6.1843 43 1 2.7467 -1.7252 -9.6892 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308697914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:49:21 Heat of formation + Delta-G solvation = -40.131248 kcal Electronic energy + Delta-G solvation = -17857.252088 eV Core-core repulsion = 15321.549614 eV Total energy + Delta-G solvation = -2535.702474 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.02194 -35.60275 -33.45529 -32.66267 -31.42970 -29.20413 -27.60332 -26.24323 -25.22736 -23.01987 -21.37976 -21.00974 -19.95667 -18.26258 -16.29834 -16.01211 -15.20939 -15.04498 -14.45341 -14.26051 -14.04459 -13.55747 -13.31244 -12.88699 -12.53788 -12.28570 -12.09504 -11.91211 -11.84950 -11.67691 -11.44931 -11.12144 -11.05624 -10.83311 -10.68953 -10.51493 -10.42240 -10.28706 -10.23180 -9.95754 -9.60551 -9.25943 -8.99154 -8.31144 -7.96809 -5.96279 -3.98014 3.33488 3.40738 3.45484 4.34596 4.50750 4.61869 4.65676 4.95136 5.03073 5.13895 5.30807 5.31998 5.39611 5.43244 5.47708 5.61163 5.68492 5.81565 5.83244 5.88742 5.90038 5.96575 5.99471 6.03925 6.09947 6.13688 6.20365 6.27217 6.35513 6.44848 6.48262 6.59061 6.79843 6.89572 7.20145 7.48907 7.72838 7.75970 7.89205 8.04830 8.48535 9.09601 9.65864 11.15241 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.046196 B = 0.004250 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.962727 B = 6586.864996 C = 6877.958462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.076 4.076 3 H 0.064 0.936 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.117 4.117 7 C -0.150 4.150 8 C 0.120 3.880 9 C -0.144 4.144 10 N -0.678 5.678 11 C 0.055 3.945 12 C -0.106 4.106 13 C 0.022 3.978 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 H 0.053 0.947 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.335 0.665 37 H 0.069 0.931 38 H 0.026 0.974 39 H 0.054 0.946 40 H 0.043 0.957 41 H 0.013 0.987 42 H 0.015 0.985 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.570 0.585 20.510 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 H 0.082 0.918 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.189 4.189 8 C 0.028 3.972 9 C -0.201 4.201 10 N -0.308 5.308 11 C -0.073 4.073 12 C -0.144 4.144 13 C -0.016 4.016 14 C -0.555 4.555 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.152 0.848 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.031 0.969 42 H 0.033 0.967 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.017 0.153 20.361 20.362 hybrid contribution 0.783 0.709 -0.990 1.448 sum 0.800 0.862 19.371 19.407 Atomic orbital electron populations 1.21774 0.94631 1.01860 1.01484 1.21078 0.96296 0.98708 0.93419 0.91800 1.21655 0.95257 1.01009 0.97391 1.21541 0.95928 1.00557 0.97640 1.21531 0.99823 0.99682 0.94459 1.22316 0.97495 1.00703 0.98390 1.20845 0.91213 0.94716 0.90395 1.22022 1.01845 0.94836 1.01432 1.60751 1.63043 1.05765 1.01197 1.22188 0.96928 0.99027 0.89170 1.21613 1.00332 0.98391 0.94105 1.19062 0.96216 0.95753 0.90530 1.21309 1.31112 1.12075 0.91027 0.92657 1.25032 0.95284 0.95127 0.99114 1.69983 1.37572 1.23802 1.22305 0.86549 0.78692 0.79872 0.82984 1.19728 1.21082 1.21026 0.92761 0.93936 0.91208 0.91621 0.92248 0.92376 0.92287 0.91677 0.92482 0.91358 0.92368 0.92488 0.92345 0.91738 0.84795 0.91309 0.95593 0.92710 0.93852 0.96910 0.96656 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.68 37.16 0.32 -1.19 16 2 C -0.08 -0.81 2.14 -90.62 -0.19 -1.01 16 3 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 4 C -0.12 -1.06 4.93 -26.73 -0.13 -1.19 16 5 C -0.12 -1.07 5.92 -26.73 -0.16 -1.23 16 6 C -0.12 -1.18 5.65 -26.73 -0.15 -1.33 16 7 C -0.15 -1.80 4.49 -26.73 -0.12 -1.92 16 8 C 0.12 1.46 0.40 -131.60 -0.05 1.41 16 9 C -0.14 -1.78 7.19 37.16 0.27 -1.51 16 10 N -0.68 -9.88 5.32 -99.97 -0.53 -10.41 16 11 C 0.06 0.97 4.90 -3.82 -0.02 0.95 16 12 C -0.11 -2.25 5.41 -26.73 -0.14 -2.40 16 13 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 14 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.43 13.29 55.43 0.74 -26.70 16 18 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 22 H 0.05 0.59 6.43 -51.93 -0.33 0.25 16 23 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.07 0.85 7.60 -51.93 -0.39 0.46 16 25 H 0.07 0.61 6.43 -51.93 -0.33 0.27 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.65 6.43 -51.93 -0.33 0.32 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.93 6.41 -51.93 -0.33 0.60 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.77 6.41 -51.93 -0.33 0.44 16 34 H 0.06 0.62 4.81 -51.93 -0.25 0.37 16 35 H 0.06 0.82 6.43 -51.93 -0.33 0.48 16 36 H 0.33 4.71 8.72 -39.29 -0.34 4.37 16 37 H 0.07 1.25 6.31 -51.93 -0.33 0.92 16 38 H 0.03 0.46 6.30 -51.93 -0.33 0.13 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 316.60 15.07 4.77 4.77 Total: -1.00 -29.62 316.60 -8.81 -38.43 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.83 Total: -0.32 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -0.93 Total: -22.77 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.20 Total: -37.11 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.62 -8.81 -38.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308697914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.704 kcal (2) G-P(sol) polarization free energy of solvation -29.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds