Wall clock time and date at job start Mon Mar 30 2020 17:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47026 * 2 1 4 4 C 1.53007 * 109.46775 * 119.99497 * 2 1 3 5 5 C 1.53001 * 109.46775 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.47531 * 299.99902 * 5 4 2 7 7 C 1.53011 * 109.46836 * 59.99916 * 6 5 4 8 8 C 1.52991 * 109.47135 * 300.00333 * 7 6 5 9 9 C 1.52998 * 109.47472 * 299.99768 * 8 7 6 10 10 N 1.46906 * 109.47014 * 179.97438 * 8 7 6 11 11 C 1.46901 * 110.99793 * 59.99753 * 10 8 7 12 12 C 1.53000 * 109.46769 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46616 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47104 * 119.99966 * 18 16 14 21 21 H 1.48489 * 109.47200 * 240.00246 * 18 16 14 22 22 H 1.09002 * 109.47026 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47232 * 300.00371 * 1 2 3 24 24 H 1.09001 * 109.46911 * 60.00343 * 1 2 3 25 25 H 1.09002 * 109.46933 * 60.00447 * 4 2 1 26 26 H 1.08994 * 109.47349 * 300.00061 * 4 2 1 27 27 H 1.09001 * 109.46911 * 180.02562 * 5 4 2 28 28 H 1.09002 * 109.47026 * 60.00503 * 5 4 2 29 29 H 1.09006 * 109.47206 * 300.00788 * 6 5 4 30 30 H 1.08995 * 109.47212 * 179.97438 * 6 5 4 31 31 H 1.08997 * 109.46934 * 179.97438 * 7 6 5 32 32 H 1.09006 * 109.46511 * 60.00447 * 7 6 5 33 33 H 1.09002 * 109.47145 * 300.00868 * 9 8 7 34 34 H 1.09001 * 109.46994 * 60.00116 * 9 8 7 35 35 H 1.08995 * 109.47718 * 180.02562 * 9 8 7 36 36 H 1.00898 * 110.99995 * 296.04676 * 10 8 7 37 37 H 1.09001 * 109.46874 * 60.00179 * 11 10 8 38 38 H 1.08992 * 109.47407 * 300.00197 * 11 10 8 39 39 H 1.09002 * 109.47398 * 300.00295 * 12 11 10 40 40 H 1.09001 * 109.47194 * 60.00475 * 12 11 10 41 41 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 42 42 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 43 43 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5700 -0.7217 1.2491 6 6 4.0795 -1.4435 -0.0001 7 6 3.5695 -0.7223 -1.2494 8 6 2.0396 -0.7217 -1.2491 9 6 1.5290 -2.1640 -1.2487 10 7 1.5499 -0.0288 -2.4484 11 6 2.0205 -0.6948 -3.6702 12 6 1.4910 0.0535 -4.8952 13 6 1.9805 -0.6405 -6.1677 14 6 1.4595 0.0968 -7.3743 15 1 0.8414 0.9731 -7.2463 16 6 1.7728 -0.3466 -8.6417 17 7 2.5260 -1.4134 -8.7976 18 14 1.1264 0.5670 -10.1373 19 1 0.3085 1.7247 -9.6947 20 1 2.2686 1.0515 -10.9533 21 1 0.2887 -0.3486 -10.9527 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6766 -1.7489 1.2494 26 1 1.6766 -0.2073 2.1393 27 1 3.9333 -1.2359 2.1389 28 1 3.9337 0.3058 1.2488 29 1 3.7157 -2.4710 0.0002 30 1 5.1695 -1.4434 -0.0005 31 1 3.9329 -1.2362 -2.1393 32 1 3.9333 0.3053 -1.2497 33 1 1.8920 -2.6782 -2.1386 34 1 1.8923 -2.6778 -0.3587 35 1 0.4390 -2.1636 -1.2490 36 1 1.8197 0.9434 -2.4397 37 1 1.6567 -1.7222 -3.6871 38 1 3.1103 -0.6951 -3.6872 39 1 0.4011 0.0533 -4.8780 40 1 1.8545 1.0810 -4.8785 41 1 3.0704 -0.6407 -6.1852 42 1 1.6168 -1.6679 -6.1843 43 1 2.7467 -1.7252 -9.6892 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308697914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:49:21 Heat of formation + Delta-G solvation = -56.790709 kcal Electronic energy + Delta-G solvation = -17857.974496 eV Core-core repulsion = 15321.549614 eV Total energy + Delta-G solvation = -2536.424883 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 239.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.98943 -37.01426 -35.27391 -33.67815 -33.04113 -30.56088 -28.55972 -27.88330 -26.32184 -24.64010 -22.65473 -21.90530 -21.56550 -19.22295 -18.48017 -17.14878 -16.57983 -16.26615 -16.06861 -15.57039 -15.08080 -14.62718 -14.41607 -14.24572 -14.02753 -13.54931 -13.45486 -13.23043 -12.97788 -12.86800 -12.75358 -12.66224 -12.44584 -12.15575 -12.06251 -11.94378 -11.55928 -11.55773 -11.41317 -11.19444 -11.07722 -11.04486 -10.76120 -10.56617 -9.18773 -8.20899 -6.32098 1.39346 1.39809 1.53570 2.40541 3.12120 3.22800 3.72453 3.79278 4.05091 4.15278 4.24491 4.29946 4.40621 4.44828 4.47909 4.58452 4.62352 4.74223 4.75918 4.85015 4.88962 4.96453 5.01083 5.09182 5.11147 5.15486 5.19758 5.22999 5.24851 5.29546 5.36300 5.42901 5.48847 5.52378 5.59873 5.70003 5.74945 5.85271 6.17541 6.29774 6.57136 6.85005 7.37292 8.91333 Molecular weight = 239.19amu Principal moments of inertia in cm(-1) A = 0.046196 B = 0.004250 C = 0.004070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.962727 B = 6586.864996 C = 6877.958462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.072 4.072 3 H 0.064 0.936 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.115 4.115 7 C -0.148 4.148 8 C 0.119 3.881 9 C -0.142 4.142 10 N -0.677 5.677 11 C 0.072 3.928 12 C -0.091 4.091 13 C 0.026 3.974 14 C -0.542 4.542 15 H 0.059 0.941 16 C -0.002 4.002 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.277 1.277 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.339 0.661 37 H 0.060 0.940 38 H 0.021 0.979 39 H 0.050 0.950 40 H 0.048 0.952 41 H -0.011 1.011 42 H -0.011 1.011 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.135 1.497 21.813 21.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 H 0.083 0.917 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.187 4.187 8 C 0.028 3.972 9 C -0.199 4.199 10 N -0.307 5.307 11 C -0.057 4.057 12 C -0.129 4.129 13 C -0.012 4.012 14 C -0.580 4.580 15 H 0.077 0.923 16 C -0.199 4.199 17 N -0.575 5.575 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.203 1.203 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.157 0.843 37 H 0.079 0.921 38 H 0.039 0.961 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.007 0.993 42 H 0.008 0.992 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.420 1.071 21.687 21.717 hybrid contribution 0.936 0.398 -1.374 1.710 sum 0.516 1.469 20.313 20.373 Atomic orbital electron populations 1.21738 0.94623 1.01729 1.01384 1.21057 0.96226 0.98693 0.93113 0.91736 1.21641 0.95371 1.01041 0.96906 1.21528 0.95700 1.00653 0.97443 1.21525 1.00171 0.99583 0.94014 1.22270 0.97167 1.00649 0.98651 1.20955 0.91511 0.94691 0.90059 1.22018 1.01563 0.94892 1.01475 1.60690 1.63106 1.06024 1.00849 1.21838 0.96366 0.98229 0.89265 1.21369 0.99877 0.98380 0.93314 1.18961 0.94555 0.94775 0.92861 1.21728 1.31506 1.12529 0.92284 0.92299 1.26006 0.95314 0.95956 1.02636 1.70113 1.38625 1.25336 1.23400 0.85374 0.78281 0.78712 0.78539 1.18604 1.20248 1.20261 0.92902 0.92362 0.92978 0.91420 0.90741 0.90751 0.92161 0.91576 0.91995 0.93563 0.92473 0.94361 0.90403 0.92118 0.84288 0.92147 0.96055 0.93081 0.93364 0.99295 0.99212 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 8.68 71.98 0.63 -2.10 16 2 C -0.07 -1.40 2.14 -10.79 -0.02 -1.42 16 3 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.11 -1.73 4.93 30.60 0.15 -1.58 16 5 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 6 C -0.11 -2.12 5.65 30.60 0.17 -1.95 16 7 C -0.15 -3.46 4.49 30.59 0.14 -3.33 16 8 C 0.12 2.81 0.40 3.52 0.00 2.81 16 9 C -0.14 -3.42 7.19 71.98 0.52 -2.90 16 10 N -0.68 -19.56 5.32 -470.19 -2.50 -22.06 16 11 C 0.07 2.58 4.90 86.30 0.42 3.01 16 12 C -0.09 -3.95 5.41 30.59 0.17 -3.78 16 13 C 0.03 1.43 4.97 29.85 0.15 1.58 16 14 C -0.54 -31.95 9.11 25.60 0.23 -31.72 16 15 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 16 C 0.00 -0.10 5.46 84.65 0.46 0.37 16 17 N -0.93 -58.14 13.29 21.45 0.28 -57.85 16 18 Si 0.97 45.21 29.54 68.60 2.03 47.23 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H 0.05 1.05 6.43 -2.39 -0.02 1.04 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 24 H 0.05 1.21 7.60 -2.39 -0.02 1.20 16 25 H 0.07 1.04 6.43 -2.39 -0.02 1.03 16 26 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 1.21 6.43 -2.38 -0.02 1.19 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 1.28 6.41 -2.39 -0.02 1.26 16 32 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.04 1.05 6.41 -2.39 -0.02 1.03 16 34 H 0.08 1.54 4.81 -2.39 -0.01 1.53 16 35 H 0.06 1.50 6.43 -2.39 -0.02 1.48 16 36 H 0.34 9.34 8.72 -89.70 -0.78 8.55 16 37 H 0.06 2.27 6.31 -2.39 -0.02 2.26 16 38 H 0.02 0.79 6.30 -2.39 -0.02 0.77 16 39 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 41 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 42 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 43 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -63.73 316.60 3.18 -60.55 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.18 Total: 14.72 kcal Atomic # 6 Polarization: -45.78 SS G_CDS: 3.20 Total: -42.59 kcal Atomic # 7 Polarization: -77.69 SS G_CDS: -2.22 Total: -79.91 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.23 kcal Total: -63.73 3.18 -60.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308697914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.760 kcal (2) G-P(sol) polarization free energy of solvation -63.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds